Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0030200 |
| Transcript ID | LotjaGi3g1v0030200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G62930.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic; TrEMBL-Plants: tr|A0A072VJ30|A0A072VJ30_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi3g1v0030200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3265551..3271237) extracted from Lotus japonicus Gifu genome v1.2.
TTGGAGGATACTAGTTATGTCAAAAAAAATAGGACCAGAAACCTTAATTTTTACAACCCATTTTTTACACAATCAATTCA CACTAATATATAACATCAATATAGGTCCAGAAACCTTAATTTTTACAAAACGCCGCAACACCAATACTACACCGAAACCT TAATTCTGGTAAGGTTTGCAATCAGAGACAGAGTCGTGATTTTTCTCAATTCAGTTCTACCATGTCAGTCTCAAGGTTAA GGATGTTTCTTCCTAATCCCACTTTTCATCTTTCCTTTTCATCCCTTCACTCTCACTCTGATGATGTTGTGTCTTCATTC AACCGCTTGTTAGAAATGTATCCTACCCCATGCATCTCCAAATTCAACAAAAATTTAACTACCCTTGTGAAGATGAAGCA TTACTCCACAGCTATATCCCTTTATCGTCAAATGGAATTCAGCAGAATCATGCCAGACATCTTCACTTTCAACATCTTGA TCAACTGTTACTGCCATATAAGGCAAATGAATTTTGCATTCTCTGTCTTTGGAAAGATTCTCAAGATGGGTTATCACCCT GATACCATCACCTTCACTACACTTATTAAAGGTCTTTGTATTAACAATGAGGTTCAGAAAGCACTGCATTTGCATGATCA GCTGGTAGCACAGGGAGTTCAGTTGAACAATGTTAGTTATGGAACATTGGTCAATGGGTTGTGTAAAATGGGTGAAACAA GAGCTGCCCTGAAGATGCTGAGACAGATTGAAGGGAGATTGGTTCAGTCTGCTGATGTGGTCATGTACAACGCCGTCATC GATGGCCTCTGCAAAGGTAAACTTGTAAGTGATGCCTGCGATTTATATTCTGAAATGGTGCTCAGGAGAATTTCTCCTGA TGTTTACACTTACAATGCTCTAATGTATGGCTTTAGCACTGTGGGTCAATTGAAAGAAGCGGTTGGTTTGTTAAATGATA TGGGATTGAATAACGTCGACCCGAATGTTTATACCTTTAACATACTGGTTGACGCCTTCTGTAAGGAAGGGAAGGTGAAA GAAGCTAAAAGTATATTTGCTGTTATGATGAAAGAAGGTGTAGAGCCTGATGTTTTCACTTATGATTCTTTAATTGAAGG GTATTTCCTAGTTAAAAAAGTGAACAAGGCTAAAGATGTATTCAACTCCATGACCCGAATGGGAGTCGCTCCTGATGTTT GGAGCTACAATATCATGATTAACGGATACTGTAAGCGTAGAATGGTGCATGGAGCTCTAAATCTCTTTGAAGAAATGCAT TCCAAAAATCTGATTCCTGATACAGTAACTTACAGTTCCCTTATTGATGGTCTGTGCAAAATAGGGAGAATATCTTGTGC TTGGGAGCTTGTTGGTAAAATGCATCGTACAGGTCAGCAAGCTGATATAATCACTTACAATTCTTTATTACATGCCCTAT GCAAGAGTCATCATGTGGACGAGGCCATTGCATTGTTTGAGAAAGTTAAAGACAAGGGCATTCAACCAGATATGTACATA TACAATGTACTTATTGATGGACTATGCAAAAGTGGAAGACTAAAGGATGCACAAGAGGTTTTTCAGAACCTTTTGACTAA AGGCTATCCACTAGATGTTGTAACATATAATATAATGATCAATGGGCTTTGTATAGAGGGTTTGTCTGATGAAGCATTGG CCTTGCAATCAAAAATGGAAGACAATGGCTGTGTTTCTGATGTTGTAACTTATGATACAATTATGCGGGCTCTCTATAGA AAAAACGACAATGATAAGGCACAAAATCTTCTTCGTGAAATGAATGCTAGAGGTCTGCTGAAGAGTGAAGCCAAGTGAGG TGCTTTCCAGCTACACTTTGTTATTTTGAATTTTCATGATGAAATCCAGTCTTTTTCAATTATATTTTGAATTTAAATTT TATTTTTTATATATTGTTAGATGTCTAATTAGTTGATTAGTTGTTGCTTTTATTTGTGTTTAGTCTTCATTTATATTTTC TGTTATGCTCAATTGGCATATGCTGTTAAGAGAGTAGGCTTTTAGCTTTCTGTTATAATGAGCTAGCACATGCTATTCAG TTATGCTGAGCTCAATAGTAAGTTATTCTAGTCTCTAGTAGCCTCCAGCTGAAGGTAATCATTCATAAATGTAACCTCTT TTTGTATTTTCCAATCAAGAAATGAATGATACATTTCAGTTTTAGTTTTCTCTACTTTTCTATCTACATTATTTTTCTAT CATGGTATCAAGAGCTTCTTGATGCATATCCACAGCTTCCAATCCAACACAATCAGTGACTTCTCTGCCACTGTTCGGCA GTGTACCTCCTCTGGTGACTACTCCGCCATTGTGTGACAGTCCTTATTCGTCATTTGTAGGTCGTCCTCCAATTTTGGCC ATAGGACCACCGGTTCATGCTACTCCATTGCATTCATGATCACTGCCTACAGTCGAAATTCAATTCTCGGTGCTTCCACA GTCTTCTCCGGCGCCAGCGACTCCTTTATATTATTCTGCTGCTTCAGTTACCTTTTCTCCTCCGACAATTTCTGGAAAAC TTAATGATAAGAACATTTTGTTATGGAAGAAACCGATCAAAGCGATTATCAAAGGACATCGCCTCCATACTTTCCTTCTG AATTCTCAGATTCCTCCACGAGTCCACGTTTTTCTAATTGCCTCTGATCGTGATTCTGGTCATGTCAATCCACTCTGCTT AGTCTGGGAGTTGCAGGATCTTCTCTGGCTTTCCTAGTTACAATCTTTGTCTTCCTTTGTTTTGACTAAGGACATTAGTC GCATTCACTCATGGCAGCTTTTGGACAAATTACACAATTATTCTCATGCTCAGAATATCGTCGAACTATCTCAGAATATC GTCTTTGTATTCAAGTGAATGTTGATTTGACGGCAAGCATCGGATTTTTTTCCTTTCAAGAACATCTTAAAGTTATGCTT TGTAGCTTACCAAGGGAGTATGAATCTCTAGTCAACTTAATCTGTTAAAAGAATTTGAAGGTTTAATGTTGGCACATGAA ACTTGCATTGAACGTAATAGGCAAGCTAATGGATCTTGGTGATAATGTCACTGCCAATCTTGTTCAGCAATTTGTTTCAT CGGTCATCGCAGAATGCACCTCCCCAGGAAAATCTATTACAGAATAATGTCTCAATCCGGACCGTCATCTTCTCAATATC AACACCAGTATCTTGATTTTTCTGGTTTTTTGGTGGTAATTCCTCTTGTGGTCGTGGTGGACGTTTTGGCCGAGAATCTC AAGTGTGCTATAAGATTGGACATGCTTTTCGCTGTTATAATAGGTTCAATCATAATTTTATTTCACAGCAGTCATCTTCC GATCAGTCTACTCAACAATTTGTTGATCAGAGTAATTATGGTATGCCTTCTTAGACCTTAGTCTCTGACACCTCACTATG TCATAGTACCTTCACAACAGCAACAACAACTTGTCCAACATCAGTGCTTTTATGAGTGTATGGCAGAAACCTTCTAGATT TATTTTTATGTCAGCAAGTCCTCAGAAATTGTCACAACAGCATCTTCAGCTTCCACAGTCTTCTCCTGCTCCTATGGCCT TTGTTTCCAATACAGTTGCTGCTCCCTAAACTACACACAGCTGGTAAGCTGACTCAGGGGCTAGTCATCATGTTACCAAT GATCCTCAGCACCTCATGGAGTCTATTACTATGCCTGGTCAGGAGCAAGTTTATGTGTGCAGTGGACAAGGTCTGCCAAT TCTTTCTATAGGCTTTACTTCATTTTCTTCTCCTCTTATTTCTAATACTAAATTTTCCCTCAAGGATTTTTTTCATCTAC CTACTATTACTAAAAATATTGTAGTGTTAGTAGGTCTGCTAGAGATAATTTTATCTATATTGGGTTTCATCCAACTAAAT TTAATGTGAAATCTCGGGTCATCAACCAAATTTTGTTTGAAGGAGCAGCCAAATAAGTGGGGCTTTATGAGTTTCCTAGT TTACTTTGTAACTTCGTCCTCATACCAAATTATATTGTTTCTAATTCATCAAACTTGCATTTCCTTTGGGGAAGAACTGT GACTTGTTCAGAAATATTTTGACTTTATCTTTGCTGGGGAAGCACGTTGTGTGTAACCTCTTGTTCTCATTTTCTTAAAA ACTTCCATTCAGAATCACATTGACTAATATTTTCTAGTTAGGTGTGCTCTTGTGTTTGTTTTCATTTTCATTGGACTTTT GTTCTGAAGCACATTGTCTCTATCTTTACTAGTAAAGAACATTTCATGTTTGTAACCTCTTTCTGATTTTCATTAGACTT GTGCTACCTTTGGGTAAGAACTCTCCACTTGTTCAGAAGCATTACTAGTAAGGCATGTCTTCGTTATCCCATTGCTCATG TTTTCATTAGACTTCTGTTTCCATATAGAGCATATCTCTTGCTTGTTCACACTATAGATACTTACATTTAGGACTAGCAC CCCAACTCTTGCTTGAGCATTTCATTTTCCTCACAGGATACTGAGTGCTCATGTTCCATTTCCTATAGAATGGTCTAAAG TCCTGTACTAAAACAGCTCTTGTTTTCATGTTTCATAACTTGAGAATAACATGCTTTAAGTCATCCAATCTTAGTCTATT TTATTGTAAATTTGCCAACATTTGGGTTTTCAAATATGAAAGTTTAAATATTTGTGGTCTGATTTTATTTTAAGAATTTC TATTTGAAATTATTTGAGCTGCAATTGTGCACTTTGATCCTAAATCAGCAAGCTGAAGCTCTTAAGCAACTGGGTCAGAA CTTCAATGGTAGTTCTATCAGTTCTTTCCACAGTCCTGGTAATGATTCATTCAAGAACATATATTTCGTTTTTGTTTTTG TTTTTCACTTTGTTATGGCTTTGGCTTTGTTAGTTGTTGGGAAGCTTTGAGTTTTAGCATGTCATAGTAAATTTTGCATT TATTTATAATGTGTTTCTTTTGCCTATTCGGATGAAGGAAGTTCCAAAATGGAGAAAGGCAAGGGACAGATGAAAGTCAT GAAACAGACATAACACAGAATGTTGTCTCTTACAGGGGACAGAGATTGTTAAAAAGTGTGGTTGCTGTTGCAGGGTTCTA ATTTGGATTCTGCAATGATGTAAAAGATGATATAATGGTAAACTTCTACACCAAGGTGATCATATTCATATTACATCTCA AAAAGTGTTCAAAATTGAAGTACTTAAAATGATTATCACGTTCAGTTAGATCTAAGCAGGGAACATTCACATCCTAGTAG AGCTAGCGCTCTAGAGTTTTACTTTTATTTATACACAGGACTCAAACATAAGACATTAAGAAGATGGAACAGAAACTGCC TGAAAAAAAACTATGAAGGTGGGTAAGAAAAGGTCTATGGGGATGGCTATGAGCCTATGATAGTGGCTATGCTCATGGGT TTGACCATGGTGTTGGCTACGGCAGCAGGAAGGATGTATATAGGAACTATGATGACAACAACATCAGTAAATACTCTTAA GCATGGCCATGGCTCTGAGCTTGGTCATGACTGCATTGACAGTGGATATGGCTACTATGAAAATTATGGCAGTGAATATG CTTTCCGAGGTTATCATGGTGGCTTGGAGTGTGTTAGAGGACGTAATATAGTTAGTCTTCACAGTTACGTAATTGGTTAG GAAAGCT
CDS sequence (LotjaGi3g1v0030200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGTCTCAAGGTTAAGGATGTTTCTTCCTAATCCCACTTTTCATCTTTCCTTTTCATCCCTTCACTCTCACTCTGA TGATGTTGTGTCTTCATTCAACCGCTTGTTAGAAATGTATCCTACCCCATGCATCTCCAAATTCAACAAAAATTTAACTA CCCTTGTGAAGATGAAGCATTACTCCACAGCTATATCCCTTTATCGTCAAATGGAATTCAGCAGAATCATGCCAGACATC TTCACTTTCAACATCTTGATCAACTGTTACTGCCATATAAGGCAAATGAATTTTGCATTCTCTGTCTTTGGAAAGATTCT CAAGATGGGTTATCACCCTGATACCATCACCTTCACTACACTTATTAAAGGTCTTTGTATTAACAATGAGGTTCAGAAAG CACTGCATTTGCATGATCAGCTGGTAGCACAGGGAGTTCAGTTGAACAATGTTAGTTATGGAACATTGGTCAATGGGTTG TGTAAAATGGGTGAAACAAGAGCTGCCCTGAAGATGCTGAGACAGATTGAAGGGAGATTGGTTCAGTCTGCTGATGTGGT CATGTACAACGCCGTCATCGATGGCCTCTGCAAAGGTAAACTTGTAAGTGATGCCTGCGATTTATATTCTGAAATGGTGC TCAGGAGAATTTCTCCTGATGTTTACACTTACAATGCTCTAATGTATGGCTTTAGCACTGTGGGTCAATTGAAAGAAGCG GTTGGTTTGTTAAATGATATGGGATTGAATAACGTCGACCCGAATGTTTATACCTTTAACATACTGGTTGACGCCTTCTG TAAGGAAGGGAAGGTGAAAGAAGCTAAAAGTATATTTGCTGTTATGATGAAAGAAGGTGTAGAGCCTGATGTTTTCACTT ATGATTCTTTAATTGAAGGGTATTTCCTAGTTAAAAAAGTGAACAAGGCTAAAGATGTATTCAACTCCATGACCCGAATG GGAGTCGCTCCTGATGTTTGGAGCTACAATATCATGATTAACGGATACTGTAAGCGTAGAATGGTGCATGGAGCTCTAAA TCTCTTTGAAGAAATGCATTCCAAAAATCTGATTCCTGATACAGTAACTTACAGTTCCCTTATTGATGGTCTGTGCAAAA TAGGGAGAATATCTTGTGCTTGGGAGCTTGTTGGTAAAATGCATCGTACAGGTCAGCAAGCTGATATAATCACTTACAAT TCTTTATTACATGCCCTATGCAAGAGTCATCATGTGGACGAGGCCATTGCATTGTTTGAGAAAGTTAAAGACAAGGGCAT TCAACCAGATATGTACATATACAATGTACTTATTGATGGACTATGCAAAAGTGGAAGACTAAAGGATGCACAAGAGGTTT TTCAGAACCTTTTGACTAAAGGCTATCCACTAGATGTTGTAACATATAATATAATGATCAATGGGCTTTGTATAGAGGGT TTGTCTGATGAAGCATTGGCCTTGCAATCAAAAATGGAAGACAATGGCTGTGTTTCTGATGTTGTAACTTATGATACAAT TATGCGGGCTCTCTATAGAAAAAACGACAATGATAAGGCACAAAATCTTCTTCGTGAAATGAATGCTAGAGGTCTGCTGA AGAGTGAAGCCAAGTGA
Protein sequence (LotjaGi3g1v0030200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVSRLRMFLPNPTFHLSFSSLHSHSDDVVSSFNRLLEMYPTPCISKFNKNLTTLVKMKHYSTAISLYRQMEFSRIMPDI FTFNILINCYCHIRQMNFAFSVFGKILKMGYHPDTITFTTLIKGLCINNEVQKALHLHDQLVAQGVQLNNVSYGTLVNGL CKMGETRAALKMLRQIEGRLVQSADVVMYNAVIDGLCKGKLVSDACDLYSEMVLRRISPDVYTYNALMYGFSTVGQLKEA VGLLNDMGLNNVDPNVYTFNILVDAFCKEGKVKEAKSIFAVMMKEGVEPDVFTYDSLIEGYFLVKKVNKAKDVFNSMTRM GVAPDVWSYNIMINGYCKRRMVHGALNLFEEMHSKNLIPDTVTYSSLIDGLCKIGRISCAWELVGKMHRTGQQADIITYN SLLHALCKSHHVDEAIALFEKVKDKGIQPDMYIYNVLIDGLCKSGRLKDAQEVFQNLLTKGYPLDVVTYNIMINGLCIEG LSDEALALQSKMEDNGCVSDVVTYDTIMRALYRKNDNDKAQNLLREMNARGLLKSEAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| Phobius | 14 | 22 | 9 | - | – | |
| Gene3D | 18 | 181 | 164 | 4.1E-33 | ||
| Phobius | 23 | 26 | 4 | - | – | |
| Phobius | 27 | 538 | 512 | - | – | |
| SUPERFAMILY | 28 | 460 | 433 | 1.8E-5 | ||
| ProSiteProfiles | 44 | 78 | 35 | 6.697 | ||
| Pfam | 78 | 126 | 49 | 4.5E-14 | ||
| ProSiteProfiles | 79 | 113 | 35 | 11.235 | ||
| TIGRFAM | 81 | 115 | 35 | 3.3E-7 | ||
| ProSiteProfiles | 114 | 148 | 35 | 10.369 | ||
| TIGRFAM | 116 | 149 | 34 | 1.2E-5 | ||
| PANTHER | 120 | 255 | 136 | 2.4E-121 | – | |
| Pfam | 145 | 176 | 32 | 1.0E-7 | ||
| ProSiteProfiles | 149 | 183 | 35 | 9.251 | ||
| TIGRFAM | 151 | 176 | 26 | 1.3E-4 | ||
| Gene3D | 182 | 249 | 68 | 1.9E-18 | ||
| Pfam | 184 | 213 | 30 | 3.2E-7 | ||
| ProSiteProfiles | 185 | 219 | 35 | 11.674 | ||
| TIGRFAM | 187 | 221 | 35 | 2.5E-9 | ||
| Pfam | 219 | 268 | 50 | 6.4E-17 | ||
| ProSiteProfiles | 220 | 254 | 35 | 10.907 | ||
| TIGRFAM | 222 | 256 | 35 | 4.8E-5 | ||
| Gene3D | 250 | 317 | 68 | 1.4E-22 | ||
| PANTHER | 252 | 458 | 207 | 2.4E-121 | – | |
| ProSiteProfiles | 255 | 289 | 35 | 13.756 | ||
| TIGRFAM | 257 | 291 | 35 | 2.1E-10 | ||
| Pfam | 286 | 318 | 33 | 1.5E-7 | ||
| ProSiteProfiles | 290 | 324 | 35 | 11.466 | ||
| TIGRFAM | 292 | 326 | 35 | 2.9E-7 | ||
| Gene3D | 318 | 390 | 73 | 2.7E-24 | ||
| Pfam | 324 | 373 | 50 | 2.9E-19 | ||
| ProSiteProfiles | 325 | 359 | 35 | 13.066 | ||
| TIGRFAM | 328 | 361 | 34 | 5.1E-11 | ||
| ProSiteProfiles | 360 | 394 | 35 | 11.4 | ||
| TIGRFAM | 362 | 391 | 30 | 6.3E-7 | ||
| Gene3D | 391 | 459 | 69 | 1.1E-23 | ||
| SUPERFAMILY | 394 | 472 | 79 | 6.28E-7 | – | |
| Pfam | 395 | 443 | 49 | 6.0E-16 | ||
| ProSiteProfiles | 395 | 429 | 35 | 13.789 | ||
| PANTHER | 395 | 530 | 136 | 2.4E-121 | – | |
| TIGRFAM | 397 | 430 | 34 | 7.6E-9 | ||
| ProSiteProfiles | 430 | 464 | 35 | 12.342 | ||
| TIGRFAM | 432 | 465 | 34 | 3.9E-6 | ||
| Gene3D | 460 | 537 | 78 | 7.7E-19 | ||
| ProSiteProfiles | 465 | 499 | 35 | 11.992 | ||
| Pfam | 465 | 511 | 47 | 4.4E-13 | ||
| TIGRFAM | 467 | 500 | 34 | 3.3E-8 | ||
| ProSiteProfiles | 500 | 534 | 35 | 10.293 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0030200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…