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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0033600 |
| Transcript ID | LotjaGi3g1v0033600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G63130.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial; TrEMBL-Plants: tr|A0A151RA84|A0A151RA84_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0033600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3545535..3549121) extracted from Lotus japonicus Gifu genome v1.2.
AACAATTGTGCCTCATCGCCACTCTCTCCTCCGCACGCAGAGACAGACACCGCATGTGCCTCATCGCCACCGCGCCCTCC GCCGCGCGACCACTATGGCCGTCACCTCAGCTAGCCGCCATCATCACCGGCTCTTTCCACTATCTCTCAGGTCGGTCCCT CTCTCCTTCCCACTGATGCTGCTGCAAACCTTGTTCCCTTAGGCCCTTGACAAGTTTCCTAGCTCTATCTGTGTTCATGC TGGTACTCCGCAGCAAAGTGCACCAATGCTTGTCTAGACTCTATTCCTCTGCATCTTCATCACTGATAATGGTAGATGAA ACTCCACAAGTTCATGCCAATTCTGAGTTCAACTTGTCTTCTGTGTCTCCAGTTCCTGAGACCAACAGGGAACTGTTTCA TGTAGTGGTTAGGGTGATTAAGTCCTTGAATTGGAAGATTGCTAGAGAAAAAAAATTTGGTAGTTGGGTTGAGACTCATG GATTTTCTCATTCAGTTAATTACTTTAGAATCATCATTCACACGTTTGCTATGGCTGGTATGCACTTGGAAGTGTTTGCT TTGCTTAGAGATATTGTTGGATACTGCAAGTGTGACGACTCGTTCGAACAGTTTTCGACTTTGTTGGATTTACCCCATCA TTCTGTTCTTGTGTTTAATGTGCTTATCAAAGTGTTTGCTTCTAACTCTATGCTTGAGCATGCCCACCAAGTGTTTGTTA GCGCGAAGAATGTTGGGCTTGAACTTCATATAAGGTCTTGCAATTTCTTGTTGAAATGCTTGGTAGAAGCGAATAGAGCG GTGTTTGTTAGGTTTTTCTTTGTGGAATTGATGGAAACCGGTCCGTTGCCAAATATCCACACCTATACTATCATGATGAG TTGTGGAGATATTAGACTGGCTGCTGAGATTTTAGGAAAAATATATAGGAGTGGGGGAAACCCGACTGTTGTCACGTATG GTACTTATATTCGTGGACTTTGTGAATGTGGTTATGTTGATGTTGCTCACAAGTTAGTTCGTAAATTGCACTGCAAACTC CATCCTCTAAATAGTCATTGTTTTAATGCTGTAATTCATGGATTTTGTCAGAGAGGTGCAGTAAATGAAGCGTTGGAAGT TTTGGAAGAAATGAAGAGCTCGCGAACATTTCCTGATGTTTATAGCTACAACATGTTACTTAATGCATTCTGCAAGAAAG GGGATGTTGAGAAAGGTCTTGAGTTGATGAAGGAAATGGAGCTCTGCCAGATAAAACCATCCATTGTTAACTACACTTCC CTCATCCTTCTATGCAAGAATAAGCTGAAGGGTCAACAACTCTATGATAAGTCATTGGAAGTTTATAATAGCATGCTACA AAATGCTATCCGGCCGAATACAATCATTTGCAATCATATTCTTAGGGTACATTGCAGGGAAGGTCAATTTAGAGAAGCTT TGACACTGTTGGAAGATTTTCATGAACAAGGAATTAACCTCAACCAATATTCATATAATGAAATCATCCACATGATTTGC AAAGAAAGCTATCCAAAAATGGCACTGGAGCTCATGCCAAGAATGCTTAAAAGGAATGTACTTCCGGGAGTTGTTAATTA TAGTACTCTTATATCTGGCTTTGCAAAAGAACAGTCAAATTTTGAAATGGTTGAGAGGTTATTCACAAGGTTGGTAAAAG CAGGGATCACTTTCAACACCAAGACATACACAACTCTTATTAGCATACATGGCCGTACTCGCAAAAGGCACAAAGCATAT TGCAGATTTGGGGAAATGATACAAAGTTGTTTGTGTCCAGATGAGGTGTCATATACAGCTTTAATAGCTGTCTTTTGTAA TATCAGAGAAATGAACGTTGCCTGTGCATTATTTCAAGAAATGTCAAGGATAGGTTGTTTGCCTAATCTATATACATATA CTTGTTTGATTGATGGATTCTGCAAGATAGACTACATAGATTTGGCCACACAGCTGTTTGATGAAATGAAAAGAAAGGGA ATTTTTCCAGATGTTGTAACTTACACTGTCCTCATTGCTTGGTACCATAAGCATGGCCGCATAGGTGAGAAAAATAAGTT ATTTGGCGAAATGAAGGCAAATTGTATTTTGCTAGATGATGGGATCAAAAAGTTGCAGGACCCAAAACTTGTGCAATTCA AGAATGTTGGGTAGCGGTTGGGAGAAGGGTAAGAATTTTGTTTGATCTATGCATTTGTCTTCCAATTTTGTTTGATCTAT CTCTCAAATGCTTACTTTGTTATGGTTTTGATTCTTTTGAAGTACTTGATGTTGATTAGTTTCGTGTTCTGGGGAATTGT AGCATATGCTTCTGCTGTGAGTTGCCTCAAAGATTGGATGGAAATCATCCAGTGTACCTGCCATAGGAGGTGAATATCAC AAGGTCAATCTTTGGGCTATTGGTGAACATAACGCTATGTTGGTTAGTTCTCTTCTCTTAATCATTTTTAAAGTTGTATC TAAATCACTAGTTTTATCTTTCTTGTTAGTTATTTCACTCTGGATAAAAGTTAAAAAGATTCCATTCCATTGATTATATA AGTGCATGTTTGGATACACGATGGAAAACCACGGTGAAGACAAAATCACGGTGAACAGCCACAAAAGTCAAGTGTGGTGG CATGTTAGTATCTGATTGCAAGGTATGAGACTTGAATGATGAGTCTCACATTGGAAGTATGAGATTCAAATTTGGGGTTT ATAAGGCTTTGGGCTCTCCAACTACAATAACTAACTTTTGTGATATGGTTCTCCGCTTCAAAGGTTCTTCTTCTTTGGGC TTGTTAGTACAATTGTCATAATTAACCTGTCAGCATAATTAATTTACCTTTTCTTGAGCAATTTGATTCAGTTTGTGTGT GCTAACTCTCATAGTGTGCTTCTATCAAGTATTTATGCAGCTTCTGAAATTTGTGAGAAAGGTAAAAGGATGAGGCGGAT CATGTAAGATCGAGCCTAGAGGTTCTGGACAGGTAGTGCATATAGTTCAATTGTCTAATGTGTTATTAGGATATCCTGAA AGTTATGTTTATTTATGACAATTTGCAACTTCTGAAAATTTCAGCTCCAATGAACCACTTGATGAAGCTCCAGGACACAT CATTTCTAGATTCACATAGCAAGAACCATTTAGCACAGCAGAATCCTCGGAACTTTCCTTATCAGGCTTTGAATTGTGAA GGTGTAGTGTGTCAGGATCTGACATTGAGTGCATGTTTGGAAATCACCATGAAATCACGGTGGGCGGCCATAAAAGTTAA GAGATGTCCATCGTGATTTTTTTTTCACCGTGTATATAAACATGCATTGAGTTACCAACAGAATCACATTGCTGAGACTG TTGATTCATATTCCTTGCAACCGTTTACTACATTTACATTCAGTTCAGCTAAGACAGTTGATTAATTTTCCTTCAAATTT CTATCTGCATTTACATTTCTGCTGCATGGAGTTAATGAATCATATATCGAAGGACTACAAGCTTTATTCTGTTGACCTAA CCCTGTAACATCATCGTTTTTCAATTTCAAGCTTGAGGAAGATTTGCTTTGTCCATTATGATCAACA
CDS sequence (LotjaGi3g1v0033600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGTACTCCGCAGCAAAGTGCACCAATGCTTGTCTAGACTCTATTCCTCTGCATCTTCATCACTGATAATGGTAGA TGAAACTCCACAAGTTCATGCCAATTCTGAGTTCAACTTGTCTTCTGTGTCTCCAGTTCCTGAGACCAACAGGGAACTGT TTCATGTAGTGGTTAGGGTGATTAAGTCCTTGAATTGGAAGATTGCTAGAGAAAAAAAATTTGGTAGTTGGGTTGAGACT CATGGATTTTCTCATTCAGTTAATTACTTTAGAATCATCATTCACACGTTTGCTATGGCTGGTATGCACTTGGAAGTGTT TGCTTTGCTTAGAGATATTGTTGGATACTGCAAGTGTGACGACTCGTTCGAACAGTTTTCGACTTTGTTGGATTTACCCC ATCATTCTGTTCTTGTGTTTAATGTGCTTATCAAAGTGTTTGCTTCTAACTCTATGCTTGAGCATGCCCACCAAGTGTTT GTTAGCGCGAAGAATGTTGGGCTTGAACTTCATATAAGGTCTTGCAATTTCTTGTTGAAATGCTTGGTAGAAGCGAATAG AGCGGTGTTTGTTAGGTTTTTCTTTGTGGAATTGATGGAAACCGGTCCGTTGCCAAATATCCACACCTATACTATCATGA TGAGTTGTGGAGATATTAGACTGGCTGCTGAGATTTTAGGAAAAATATATAGGAGTGGGGGAAACCCGACTGTTGTCACG TATGGTACTTATATTCGTGGACTTTGTGAATGTGGTTATGTTGATGTTGCTCACAAGTTAGTTCGTAAATTGCACTGCAA ACTCCATCCTCTAAATAGTCATTGTTTTAATGCTGTAATTCATGGATTTTGTCAGAGAGGTGCAGTAAATGAAGCGTTGG AAGTTTTGGAAGAAATGAAGAGCTCGCGAACATTTCCTGATGTTTATAGCTACAACATGTTACTTAATGCATTCTGCAAG AAAGGGGATGTTGAGAAAGGTCTTGAGTTGATGAAGGAAATGGAGCTCTGCCAGATAAAACCATCCATTGTTAACTACAC TTCCCTCATCCTTCTATGCAAGAATAAGCTGAAGGGTCAACAACTCTATGATAAGTCATTGGAAGTTTATAATAGCATGC TACAAAATGCTATCCGGCCGAATACAATCATTTGCAATCATATTCTTAGGGTACATTGCAGGGAAGGTCAATTTAGAGAA GCTTTGACACTGTTGGAAGATTTTCATGAACAAGGAATTAACCTCAACCAATATTCATATAATGAAATCATCCACATGAT TTGCAAAGAAAGCTATCCAAAAATGGCACTGGAGCTCATGCCAAGAATGCTTAAAAGGAATGTACTTCCGGGAGTTGTTA ATTATAGTACTCTTATATCTGGCTTTGCAAAAGAACAGTCAAATTTTGAAATGGTTGAGAGGTTATTCACAAGGTTGGTA AAAGCAGGGATCACTTTCAACACCAAGACATACACAACTCTTATTAGCATACATGGCCGTACTCGCAAAAGGCACAAAGC ATATTGCAGATTTGGGGAAATGATACAAAGTTGTTTGTGTCCAGATGAGGTGTCATATACAGCTTTAATAGCTGTCTTTT GTAATATCAGAGAAATGAACGTTGCCTGTGCATTATTTCAAGAAATGTCAAGGATAGGTTGTTTGCCTAATCTATATACA TATACTTGTTTGATTGATGGATTCTGCAAGATAGACTACATAGATTTGGCCACACAGCTGTTTGATGAAATGAAAAGAAA GGGAATTTTTCCAGATGTTGTAACTTACACTGTCCTCATTGCTTGGTACCATAAGCATGGCCGCATAGGTGAGAAAAATA AGTTATTTGGCGAAATGAAGGCAAATTGTATTTTGCTAGATGATGGGATCAAAAAGTTGCAGGACCCAAAACTTGTGCAA TTCAAGAATGTTGGGTAG
Protein sequence (LotjaGi3g1v0033600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVLRSKVHQCLSRLYSSASSSLIMVDETPQVHANSEFNLSSVSPVPETNRELFHVVVRVIKSLNWKIAREKKFGSWVET HGFSHSVNYFRIIIHTFAMAGMHLEVFALLRDIVGYCKCDDSFEQFSTLLDLPHHSVLVFNVLIKVFASNSMLEHAHQVF VSAKNVGLELHIRSCNFLLKCLVEANRAVFVRFFFVELMETGPLPNIHTYTIMMSCGDIRLAAEILGKIYRSGGNPTVVT YGTYIRGLCECGYVDVAHKLVRKLHCKLHPLNSHCFNAVIHGFCQRGAVNEALEVLEEMKSSRTFPDVYSYNMLLNAFCK KGDVEKGLELMKEMELCQIKPSIVNYTSLILLCKNKLKGQQLYDKSLEVYNSMLQNAIRPNTIICNHILRVHCREGQFRE ALTLLEDFHEQGINLNQYSYNEIIHMICKESYPKMALELMPRMLKRNVLPGVVNYSTLISGFAKEQSNFEMVERLFTRLV KAGITFNTKTYTTLISIHGRTRKRHKAYCRFGEMIQSCLCPDEVSYTALIAVFCNIREMNVACALFQEMSRIGCLPNLYT YTCLIDGFCKIDYIDLATQLFDEMKRKGIFPDVVTYTVLIAWYHKHGRIGEKNKLFGEMKANCILLDDGIKKLQDPKLVQ FKNVG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 76 | 268 | 193 | 3.4E-20 | ||
| PANTHER | 88 | 307 | 220 | 1.0E-95 | – | |
| ProSiteProfiles | 136 | 170 | 35 | 8.024 | ||
| Pfam | 139 | 162 | 24 | 0.32 | ||
| ProSiteProfiles | 171 | 205 | 35 | 6.204 | ||
| Pfam | 233 | 263 | 31 | 1.3E-6 | ||
| ProSiteProfiles | 237 | 271 | 35 | 7.815 | ||
| Gene3D | 269 | 357 | 89 | 1.5E-24 | ||
| Pfam | 272 | 320 | 49 | 1.8E-16 | ||
| ProSiteProfiles | 272 | 306 | 35 | 11.937 | ||
| TIGRFAM | 275 | 308 | 34 | 4.0E-7 | ||
| SUPERFAMILY | 305 | 485 | 181 | 4.97E-5 | – | |
| PANTHER | 306 | 352 | 47 | 1.0E-95 | – | |
| ProSiteProfiles | 307 | 341 | 35 | 12.836 | ||
| TIGRFAM | 309 | 342 | 34 | 7.5E-9 | ||
| ProSiteProfiles | 342 | 380 | 39 | 7.432 | ||
| Gene3D | 358 | 466 | 109 | 7.9E-23 | ||
| PANTHER | 364 | 496 | 133 | 1.0E-95 | – | |
| Pfam | 380 | 429 | 50 | 1.9E-9 | ||
| ProSiteProfiles | 381 | 415 | 35 | 9.668 | ||
| TIGRFAM | 384 | 416 | 33 | 8.4E-6 | ||
| ProSiteProfiles | 416 | 450 | 35 | 10.15 | ||
| Pfam | 450 | 496 | 47 | 1.2E-7 | ||
| ProSiteProfiles | 451 | 486 | 36 | 8.616 | ||
| Gene3D | 467 | 635 | 169 | 2.2E-39 | ||
| ProSiteProfiles | 487 | 521 | 35 | 8.429 | ||
| TIGRFAM | 490 | 523 | 34 | 2.5E-4 | ||
| PANTHER | 500 | 622 | 123 | 1.0E-95 | – | |
| Pfam | 521 | 570 | 50 | 8.9E-16 | ||
| ProSiteProfiles | 522 | 556 | 35 | 10.95 | ||
| TIGRFAM | 524 | 557 | 34 | 1.7E-5 | ||
| ProSiteProfiles | 557 | 591 | 35 | 13.011 | ||
| TIGRFAM | 559 | 593 | 35 | 1.3E-9 | ||
| Pfam | 580 | 622 | 43 | 1.4E-5 | ||
| ProSiteProfiles | 592 | 626 | 35 | 9.186 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0033600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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