Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0036000 |
| Transcript ID | LotjaGi3g1v0036000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GTPase obg; TAIR: AT1G07615.1 GTP-binding protein Obg/CgtA; Swiss-Prot: sp|F4HSD4|OBGM_ARATH Probable GTP-binding protein OBGM, mitochondrial; TrEMBL-Plants: tr|G7I2N7|G7I2N7_MEDTR Obg family GTPase CgtA; Found in the gene: LotjaGi3g1v0036000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3886493..3890057) extracted from Lotus japonicus Gifu genome v1.2.
GCAATATCAAACTTCCTTTCAAAAAAAATAAACCTCTTCCTTCTCTCTCGTTAGTCGTTACAGCCAAACTAACTCTAAAA TCAATCGCTGCTTCACTTCATTGCTTTAAACCCTAAATCCCAAATCGCTCCACCGAAGTGAAGCAAGAAGACAGCCTCTT TCTGCCGGTGCTCCGCCTCCGTCCTCGCACCTGGTATGTCTATTTCTCTTCTTTCTTCTCAGTTATTTCCTTCCTTGTTT GTTGGATTCATTGTGAATGTTTGTTTGTTGCCTCCACTTTCCATTTCCATTTCAAAGCTCAGTTTTTTTCTTATTTTATT GTGAATTCATGTTTCAGAACTCATATTTGATCTTGCCTACAAACTGTTTGATGTGTGGTCTTAGTACACCTATGATATTT TTCTCTAGAGCTCTTTTGCCATGGATATTGTTTGGCTAGTATTTGGACATGTTGCACTTTTGCCTGTGTGTGTATATATA TGTATTAACGTACCCGTACCTAGGATTTTGAAAAAATCTTGTACCCGCACCCGTGCATCCTAGGTATTTAGATTGGAATT ATTGGGAGAAATAGAGAGCAAGCTCTAATTATAGTAACATAAGATAAGATAGGAACAAATAGCAGATACCTGATATAGGG AAAACACAGAGATACCATATTTGTGGAGTTTGTTTTATATATGGTTTTAAATTCAAGTTTATAATTTAAGTATGAGGTGG CTGAAGGTTGGTGTTAGTCACAAAATGGAGGAGAAATTTATTTGTTTGAGTAGAGATGATGTTGCTGTTATAACTTCAAA ATTTGTTACAAGCAATAATTTGGAAGGAGAAGGATGAGGAGTGGTTGTGAACTCTTGAAAGCTCTTGTATATATTTCTTG ATATCGAGGTTTGCTTGGTTGTAGAATCAATCCCCTTGATAGTCAGATGATTTCTCAGTCATTTACTATACTCTACTTAA GCAAGAAAAAATTTCTTTGGATTTTTTCTTTCTTTTCCAAAATCATCTATTCAACCTGTTAAAAAAATCACAAAACCTTG AATTTGACCATGCATATCACCTGCTTCAGGAACTACCACAAGGAGAAATCCTACAAAAAAAATCCTATTTGTTTCTCAGT TCATTGTATAGGAACTAACTTGCTTGGTGTTAGTCAATTATTAATCTTCAATCTCTTTTGTTCAGCTGTTTCTGAAGGTG TGAAGTTCCTACAAATTAAAGACTATTTGGTTCCATTCCAAAACTTTACGATTTTATTGAGGGATACTGAACATACACAA ATGCTGGTCTTTCAAGCAAGATCCCTTCGACGCATAGAAGCTTTTACTCAAACTTGTATAAATAGACGGTCTGCTACCGT TTATTCTTGTTACTCAGATGCTCCTCACAAGAAGTCTAAGCTTGCTCCTTTACAGGTGATCACCAACTTATTTTTTCTAC AACTCAATGCAACAAAAAAATTGGGCTAACTGTGATTCATTTTCTGTTTCTAAGCACTGTGTCGTGGTTTTGGATCTTTA TTTGTAGGAGAGAAGAATGATAGACAAGTTTAAGATAATTGCAAAAGCAGGAGATGGAGGATCTGGTTGCAGCAGCTTTC ATCGTAGCCGTCATGATCGCCAGGGCAGAGCTGATGGTGCATTTTCAACTTCTGCTTATTATGTATACCTTTGGTTCCGT CAAATTTTTAATCTATTTGTTTAAAATGTAATTATTCAGTAGTCAGGATTCAGAACTGTGCTATTGTAAATACTATTATC AGATTGATGTTAAGAAATCTTGATTGGGGTGCAATAGAGCTGATTACAATGTTGTTTATTGTAGGTGGCAATGGCGGGAG AGGTGGTGATGTGATTCTAGAATGCTCTCCCAGAGTTTGGGACTTCAGTGGTTTACAACACCACCTGGTATGCACTTACA TCTTCTATCCAATTTCTGCTGAAAAAATGAAAAGTTTGATGCTAATGGTGTCCCATAGATAGCAGGGAAAGGAGGACCAG GATCATCAAAGAATAAAATAGGAACCAGGGGTGCTGATAAGGTGACTAAAGTTTGCCTCTTCTCTCATCTATAAAACTGT TTCATAATTTTCTTTTGTTTGCAATAATACAGAAATGTGAGTTCATTCCTAAATATATTCTCTTATAGGTTGTCCATGTA CCCGTTGGAACTGTAATTCATCTTGTTAATGGTGATATACCTTCTATAGTCAAAACTGAATCCTCAGCAGATACAGACCC TTGGGAGATTTCTGGTGCACTTGTTGATGATCTTCCAGACCATGGCAATGGTTCTATCTCCAATGCTACAAATGGAGAAG AAGTCAAAACAATACATCCTACTGGCTGCTCTTCATCACAAGCAGCTGAAAAAAATGTTGAGAAATCTGTAAAATCAGGA CATGTTGCATCAACAGATGTACTTTCTCAACTTTCTATTTCTAATGGAACTCCCAAATTTGGCACAGAGTATATAGGAGA GGAACAAGAGGAACAAGAGATACTATATAATGTTGCTGAACTGACAGAAGAAGGTCAACAAATGATCGTTGCACGTGGAG GAGAGGGTGGTCCTGGCAATCTTTCTACTTCCAAAGATTCGAGGAAGCCTATAACTACAAAGGCAGGAGCATGTCGTCAA CACATATCTAATCTTGAGGACTCTGACAGTGTTTGCTCCTCTCTGAATGCAGGTATGCCTGGTTCTGAGAATGTTCTTAT ATTAGAACTCAAGAGCATTGCTGACGTGAGCTTTGTGGGAATGCCTAATGCTGGTAAAAGCACCTTACTCGGGGCGATAT CAAGGGCTAAGCCTGCTGTTGGTCACTATGCCTTCACTACTCTTAGGCCAAATTTAGGGAATCTAAACTTTGATGATTTC TCAATAACAGTGGCTGATATTCCTGGACTTATTAAGGGTGCACACCAAAACCGTGGACTCGGACATGCATTTCTGCGCCA CATAGAACGCACTAAGGTTCTGGCTTATGTGGTAGATTTGGCTGCTGCTTTACATGGAAGAAAGGGGATTCCACCATGGG AACAGCTGAAGGACTTAATACTGGAGCTCGAGTACCATCAGGATGGGTTATCCAATCGGCCATCCTTGATAGTTGCAAAT AAGATTGATGAGGAAGGTGCAGATGAAGTGTACCTTGAGTTACAGAGAAGGGTCCATGGTGTTCCCATCTTTCGTGTGTG TGCTGTTTTGGAGGAAGGGATACCAGAGCTTAAAGCTGGCCTTAGAATGCTTGTCAATGGTGAAATGTCATACAAACTTT GCCTTGATCAAATTTTGATTGATTAATATTTTGATTGATTAGATTATTGTTAACAAGTCTGAGTAAGGATGTGGAAACCC CCACAGCTGAGGAAAGATAGAATGAAAAATGTTCTTTTCACGATAAATAATTGGAGGGCTTTTGAAGTATTTTTCCTGCT TTTTTTTGGTAAATGGGATTGATCATTGAGCATCTTACTTTTGCTTAACCAAAAGAGTTAATGATTTTTAGACACTTAAA TAGTACAAAAACTCCACATACAACCAATTTCCTCTCTATCTCTAT
CDS sequence (LotjaGi3g1v0036000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGTCTTTCAAGCAAGATCCCTTCGACGCATAGAAGCTTTTACTCAAACTTGTATAAATAGACGGTCTGCTACCGT TTATTCTTGTTACTCAGATGCTCCTCACAAGAAGTCTAAGCTTGCTCCTTTACAGGAGAGAAGAATGATAGACAAGTTTA AGATAATTGCAAAAGCAGGAGATGGAGGATCTGGTTGCAGCAGCTTTCATCGTAGCCGTCATGATCGCCAGGGCAGAGCT GATGGTGGCAATGGCGGGAGAGGTGGTGATGTGATTCTAGAATGCTCTCCCAGAGTTTGGGACTTCAGTGGTTTACAACA CCACCTGATAGCAGGGAAAGGAGGACCAGGATCATCAAAGAATAAAATAGGAACCAGGGGTGCTGATAAGGTTGTCCATG TACCCGTTGGAACTGTAATTCATCTTGTTAATGGTGATATACCTTCTATAGTCAAAACTGAATCCTCAGCAGATACAGAC CCTTGGGAGATTTCTGGTGCACTTGTTGATGATCTTCCAGACCATGGCAATGGTTCTATCTCCAATGCTACAAATGGAGA AGAAGTCAAAACAATACATCCTACTGGCTGCTCTTCATCACAAGCAGCTGAAAAAAATGTTGAGAAATCTGTAAAATCAG GACATGTTGCATCAACAGATGTACTTTCTCAACTTTCTATTTCTAATGGAACTCCCAAATTTGGCACAGAGTATATAGGA GAGGAACAAGAGGAACAAGAGATACTATATAATGTTGCTGAACTGACAGAAGAAGGTCAACAAATGATCGTTGCACGTGG AGGAGAGGGTGGTCCTGGCAATCTTTCTACTTCCAAAGATTCGAGGAAGCCTATAACTACAAAGGCAGGAGCATGTCGTC AACACATATCTAATCTTGAGGACTCTGACAGTGTTTGCTCCTCTCTGAATGCAGGTATGCCTGGTTCTGAGAATGTTCTT ATATTAGAACTCAAGAGCATTGCTGACGTGAGCTTTGTGGGAATGCCTAATGCTGGTAAAAGCACCTTACTCGGGGCGAT ATCAAGGGCTAAGCCTGCTGTTGGTCACTATGCCTTCACTACTCTTAGGCCAAATTTAGGGAATCTAAACTTTGATGATT TCTCAATAACAGTGGCTGATATTCCTGGACTTATTAAGGGTGCACACCAAAACCGTGGACTCGGACATGCATTTCTGCGC CACATAGAACGCACTAAGGTTCTGGCTTATGTGGTAGATTTGGCTGCTGCTTTACATGGAAGAAAGGGGATTCCACCATG GGAACAGCTGAAGGACTTAATACTGGAGCTCGAGTACCATCAGGATGGGTTATCCAATCGGCCATCCTTGATAGTTGCAA ATAAGATTGATGAGGAAGGTGCAGATGAAGTGTACCTTGAGTTACAGAGAAGGGTCCATGGTGTTCCCATCTTTCGTGTG TGTGCTGTTTTGGAGGAAGGGATACCAGAGCTTAAAGCTGGCCTTAGAATGCTTGTCAATGGTGAAATGTCATACAAACT TTGCCTTGATCAAATTTTGATTGATTAA
Protein sequence (LotjaGi3g1v0036000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVFQARSLRRIEAFTQTCINRRSATVYSCYSDAPHKKSKLAPLQERRMIDKFKIIAKAGDGGSGCSSFHRSRHDRQGRA DGGNGGRGGDVILECSPRVWDFSGLQHHLIAGKGGPGSSKNKIGTRGADKVVHVPVGTVIHLVNGDIPSIVKTESSADTD PWEISGALVDDLPDHGNGSISNATNGEEVKTIHPTGCSSSQAAEKNVEKSVKSGHVASTDVLSQLSISNGTPKFGTEYIG EEQEEQEILYNVAELTEEGQQMIVARGGEGGPGNLSTSKDSRKPITTKAGACRQHISNLEDSDSVCSSLNAGMPGSENVL ILELKSIADVSFVGMPNAGKSTLLGAISRAKPAVGHYAFTTLRPNLGNLNFDDFSITVADIPGLIKGAHQNRGLGHAFLR HIERTKVLAYVVDLAAALHGRKGIPPWEQLKDLILELEYHQDGLSNRPSLIVANKIDEEGADEVYLELQRRVHGVPIFRV CAVLEEGIPELKAGLRMLVNGEMSYKLCLDQILID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 38 | 501 | 464 | 5.0E-147 | – | |
| PANTHER | 38 | 501 | 464 | 5.0E-147 | – | |
| Gene3D | 45 | 164 | 120 | 5.8E-28 | ||
| PIRSF | 46 | 508 | 463 | 9.2E-91 | ||
| ProSiteProfiles | 47 | 327 | 281 | 44.199 | – | |
| SUPERFAMILY | 49 | 291 | 243 | 6.93E-30 | ||
| Pfam | 50 | 141 | 92 | 2.6E-26 | ||
| MobiDBLite | 61 | 88 | 28 | - | – | |
| Gene3D | 174 | 326 | 153 | 3.6E-5 | ||
| CDD | 328 | 499 | 172 | 7.55758E-77 | ||
| ProSiteProfiles | 328 | 500 | 173 | 60.253 | ||
| Gene3D | 328 | 511 | 184 | 1.9E-47 | – | |
| SUPERFAMILY | 329 | 498 | 170 | 8.99E-43 | ||
| PRINTS | 330 | 350 | 21 | 2.1E-28 | ||
| Pfam | 330 | 455 | 126 | 8.3E-24 | ||
| PRINTS | 351 | 369 | 19 | 2.1E-28 | ||
| PRINTS | 378 | 393 | 16 | 2.1E-28 | ||
| PRINTS | 395 | 413 | 19 | 2.1E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0036000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…