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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0039300 |
| Transcript ID | LotjaGi3g1v0039300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Udp-glucose 4,6-dehydratase; TAIR: AT1G78570.1 rhamnose biosynthesis 1; Swiss-Prot: sp|Q9SYM5|RHM1_ARATH Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1; TrEMBL-Plants: tr|A0A1J7GF13|A0A1J7GF13_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0039300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4220943..4224016) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCCTTCCATTTTCCTCTCAAATCTCCTTCTATTCCTCTCTGGATTCGCTACCAATTTGTAAGTTTGTTTTTCTCTCT CTCTCTCTCTCTCACTCTTTCTGTATATTTGTTTTGAGTTTCCGTGGTGTGTTTTCATGATCTTGCTTGTGCCCATTTCC ATTTGATCATTTTTTGATTGAAAGAATTCAGCTTTTGGCAAATCAGTGTTTTCTGTGATCTGGGTATTGCTCCTTTTTTA TGGATCTGTGATGAATTGTAAGATCATGTTTTTCTCTGTTCATAATTGTCATGCTTGATTCCCAAGTGAACATTTCAACT GGTGATTGTGTAAAAAATAGATCCGTGTTCTTATTTATGCTTGAATCTGTGCAATGTGTTTCGTAGCATGTTGTTGTGAT TTTGAAGGTTTTCTTTTGGGGTTGAATTTTCTGCGTTCAATGTTGTGTTGTTTTCCTTTTCCTCCATTGATCTTGCAAAA TGGAATTTTCCAGCAAGTGATTGATTAAGAATGTAACATTTTGTTCAGTCATTCGTTAACTAAATGAAGAAAGTATTGTT AGAATATAATATAAAATCATTCATTTGGCCCTTACCCAATAGCTTAAGCTTTTGGGATAAGTGGTTATTTGATAAATATT AGATTTCTTTTACTTTTTCTTATTTCACTTGAAGTTATAGAAAGCTTTGATGCTATAGTGCACTTATGGCGCCTTTCTCC TGTGATGAGGTTTTAAAACTATACATCCTGCTAACTCCCCGAAACCGGGTACTATTAAGCTAGTCTTGTGCAGTTGTGCT TTAATATCTCGTAGGTTATTCAATTTCTGTTGTTATGGCTATAGTCTGGTTTATTTTTTCTTCGTGAGATTGTTTTGTAA AATGATATTCTGTTCACTTTTGCTGTTTGTGGTTTCAATTGATAAATTTGTGTTTTGTTTCTGTTTTATTGTAGAAGTTG CCTGACATGGCTTCATATACCCCAAAGAATATCCTTATTACTGGGGCTGCTGGGTTCATTGCCTCTCATGTTGCCAACCG GCTTGTCAGGACCTATCCAGACTACAAAATTGTTGTGCTCGATAAACTCGATTATTGTTCCAATCTGAAGAACCTCCTTC CTTCCAAATCATCTCCTAACTTCAAGTTTGTGAAGGGGGACATTGGTAGTGCTGATCTTGTCAACCACCTTCTTATCACC GAGTCCATTGATACTATAATGCACTTTGCTGCTCAAACACATGTTGACAACTCCTTTGGTAATAGCTTTGAGTTCACCAA GAACAACATATATGGAACTCATGTCCTATTAGAAGCCTGCAAGGTAACTGGACAAATCAGAAGGTTCATTCATGTCAGCA CAGACGAGGTGTACGGGGAGACAGATGAGGATGCTGTTGTGGGAAACCATGAGGCTTCCCAACTTCTTCCAACAAACCCA TACTCTGCAACAAAGGCTGGGGCTGAAATGCTTGTTATGGCATATGGTACGTCATATGGTTTACCTGTCATCACAACTCG TGGGAACAATGTTTACGGGCCAAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATCCTACTGGCCATGCAAGGAAAGA CTCTTCCAATTCATGGGGATGGTTCAAATGTGAGGAGTTACTTATATTGTGAAGATGTTGCGGAGGCATTTGAAGTTATC CTTCATAGGGGAGAGGTTGGTCATGTCTACAATATCGGGACAAAGAAGGAAAGGAGAGTTATTGATGTGGCCAAAGATAT ATGCAATCTTTTCTCAAAGGATCCAGAAACAAGTATAAAATTTGTAGATAATAGACCATTTAATGACCAGAGGTACTTTC TCGACGATCAAAAGCTGAAGGTTTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGCCTGAAGAAAACCATGGAATGG TATACACAAAATCCTGATTGGTGGGGTGATGTCACAGGAGCGTTGCTTCCTCATCCAAGGATGCTGATGATGCCTGGTGG GATGGAGAGACATTATGAAGGATCTGAAGGTGAAAACCCTGCTTCCTTGGCTTCAAGTAATACTCGAATGGTTGTTCCGT CATCCAAGAGCAATGGTACTCAGCAGAAACCTCCTTTTAAGTTCTTGATCTATGGTAGAACAGGGTGGATTGGAGGTTTG CTGGGGAAACTGTGCGATAAGCAAGGAATTCCATATGAATATGGAAAGGGGCGCCTAGAGGATCGCTCCTCAGTGGTGGC TGACATTAATAATGTGAAACCAACCCATGTTTTTAATGCTGCAGGCGTGACTGGTAGACCCAATGTCGATTGGTGTGAAT CTCACAAAACAGAAACCATCAGAACTAATGTGGCTGGCACTTTAACATTGGCTGATGTTTGCAGAGAGAATGGGATCTTG GTGATAAATTACGCTACTGGGTGCATATTTGAGTATGATGCATCGCATCCTGAAGGCTCCGGCATTGGTTTTAAGGAGGA AGACAAGCCCAATTTCATTGGCTCTTTCTATTCCAAAACTAAAGCTATGGTAAGTTTTCCTCCCCACATGGTATGATCTC ATTATTTTTCATTATGAATTAACTCAAATAATGACTTTTATTTGAATTTTGATCAGGTTGAGGAGCTCTTGAGAGAGTAT GACAATGTATGCACCCTCAGGGTTCGCATGCCGATTTCATCTGACCTGAGCAACCCGCGCAACTTCATCACGAAGATTTC TCGTTATAACAAGGTAGTTAACATTCCAAACAGCATGACTATTTTGGATGAGCTTCTGCCAATTTCAATTGAGATGGCAA AGAGGAACCTGAGGGGAATCTGGAACTTCACAAACCCTGGGGTAGTGAGCCACAACGAGATCCTTGAGATGTACAGGGAT TACATTGACCCCAACTTCAAGTGGGTTAACTTCAATCTGGAAGAGCAAGCCAAGGTAATTGTTGCTCCTCGAAGCAACAA TGAACTGGATGCTTCCAAATTGAATAACGAATTCCCAGAATTGCTTCCCATCAAGGAATCACTAATCAAGTATGTCTTCG AGCCAAACAAGAAATAAACAGGTTTATGTTTTAG
CDS sequence (LotjaGi3g1v0039300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCATATACCCCAAAGAATATCCTTATTACTGGGGCTGCTGGGTTCATTGCCTCTCATGTTGCCAACCGGCTTGT CAGGACCTATCCAGACTACAAAATTGTTGTGCTCGATAAACTCGATTATTGTTCCAATCTGAAGAACCTCCTTCCTTCCA AATCATCTCCTAACTTCAAGTTTGTGAAGGGGGACATTGGTAGTGCTGATCTTGTCAACCACCTTCTTATCACCGAGTCC ATTGATACTATAATGCACTTTGCTGCTCAAACACATGTTGACAACTCCTTTGGTAATAGCTTTGAGTTCACCAAGAACAA CATATATGGAACTCATGTCCTATTAGAAGCCTGCAAGGTAACTGGACAAATCAGAAGGTTCATTCATGTCAGCACAGACG AGGTGTACGGGGAGACAGATGAGGATGCTGTTGTGGGAAACCATGAGGCTTCCCAACTTCTTCCAACAAACCCATACTCT GCAACAAAGGCTGGGGCTGAAATGCTTGTTATGGCATATGGTACGTCATATGGTTTACCTGTCATCACAACTCGTGGGAA CAATGTTTACGGGCCAAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATCCTACTGGCCATGCAAGGAAAGACTCTTC CAATTCATGGGGATGGTTCAAATGTGAGGAGTTACTTATATTGTGAAGATGTTGCGGAGGCATTTGAAGTTATCCTTCAT AGGGGAGAGGTTGGTCATGTCTACAATATCGGGACAAAGAAGGAAAGGAGAGTTATTGATGTGGCCAAAGATATATGCAA TCTTTTCTCAAAGGATCCAGAAACAAGTATAAAATTTGTAGATAATAGACCATTTAATGACCAGAGGTACTTTCTCGACG ATCAAAAGCTGAAGGTTTTGGGTTGGTCTGAGAGGACCACTTGGGAAGAGGGCCTGAAGAAAACCATGGAATGGTATACA CAAAATCCTGATTGGTGGGGTGATGTCACAGGAGCGTTGCTTCCTCATCCAAGGATGCTGATGATGCCTGGTGGGATGGA GAGACATTATGAAGGATCTGAAGGTGAAAACCCTGCTTCCTTGGCTTCAAGTAATACTCGAATGGTTGTTCCGTCATCCA AGAGCAATGGTACTCAGCAGAAACCTCCTTTTAAGTTCTTGATCTATGGTAGAACAGGGTGGATTGGAGGTTTGCTGGGG AAACTGTGCGATAAGCAAGGAATTCCATATGAATATGGAAAGGGGCGCCTAGAGGATCGCTCCTCAGTGGTGGCTGACAT TAATAATGTGAAACCAACCCATGTTTTTAATGCTGCAGGCGTGACTGGTAGACCCAATGTCGATTGGTGTGAATCTCACA AAACAGAAACCATCAGAACTAATGTGGCTGGCACTTTAACATTGGCTGATGTTTGCAGAGAGAATGGGATCTTGGTGATA AATTACGCTACTGGGTGCATATTTGAGTATGATGCATCGCATCCTGAAGGCTCCGGCATTGGTTTTAAGGAGGAAGACAA GCCCAATTTCATTGGCTCTTTCTATTCCAAAACTAAAGCTATGGTTGAGGAGCTCTTGAGAGAGTATGACAATGTATGCA CCCTCAGGGTTCGCATGCCGATTTCATCTGACCTGAGCAACCCGCGCAACTTCATCACGAAGATTTCTCGTTATAACAAG GTAGTTAACATTCCAAACAGCATGACTATTTTGGATGAGCTTCTGCCAATTTCAATTGAGATGGCAAAGAGGAACCTGAG GGGAATCTGGAACTTCACAAACCCTGGGGTAGTGAGCCACAACGAGATCCTTGAGATGTACAGGGATTACATTGACCCCA ACTTCAAGTGGGTTAACTTCAATCTGGAAGAGCAAGCCAAGGTAATTGTTGCTCCTCGAAGCAACAATGAACTGGATGCT TCCAAATTGAATAACGAATTCCCAGAATTGCTTCCCATCAAGGAATCACTAATCAAGTATGTCTTCGAGCCAAACAAGAA ATAA
Protein sequence (LotjaGi3g1v0039300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASYTPKNILITGAAGFIASHVANRLVRTYPDYKIVVLDKLDYCSNLKNLLPSKSSPNFKFVKGDIGSADLVNHLLITES IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYS ATKAGAEMLVMAYGTSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKTLPIHGDGSNVRSYLYCEDVAEAFEVILH RGEVGHVYNIGTKKERRVIDVAKDICNLFSKDPETSIKFVDNRPFNDQRYFLDDQKLKVLGWSERTTWEEGLKKTMEWYT QNPDWWGDVTGALLPHPRMLMMPGGMERHYEGSEGENPASLASSNTRMVVPSSKSNGTQQKPPFKFLIYGRTGWIGGLLG KLCDKQGIPYEYGKGRLEDRSSVVADINNVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVCRENGILVI NYATGCIFEYDASHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLREYDNVCTLRVRMPISSDLSNPRNFITKISRYNK VVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYRDYIDPNFKWVNFNLEEQAKVIVAPRSNNELDA SKLNNEFPELLPIKESLIKYVFEPNKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 659 | 659 | 0.0 | – | |
| PANTHER | 1 | 659 | 659 | 0.0 | – | |
| SUPERFAMILY | 3 | 333 | 331 | 2.37E-86 | ||
| CDD | 7 | 324 | 318 | 2.88587E-176 | ||
| TIGRFAM | 8 | 328 | 321 | 6.5E-110 | ||
| Gene3D | 8 | 314 | 307 | 2.8E-115 | – | |
| Pfam | 10 | 315 | 306 | 8.4E-69 | ||
| Gene3D | 201 | 322 | 122 | 2.8E-115 | – | |
| Gene3D | 374 | 667 | 294 | 2.9E-82 | – | |
| SUPERFAMILY | 383 | 657 | 275 | 1.98E-36 | ||
| CDD | 385 | 657 | 273 | 2.6646E-60 | – | |
| Pfam | 385 | 557 | 173 | 3.1E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DTDP-glucose 4,6-dehydratase activity | Catalysis of the reaction: dTDP-glucose = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + H(2)O. | ||
| Biological process | Nucleotide-sugar metabolic process | The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. |
Expression pattern of LotjaGi3g1v0039300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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