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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0039900 |
| Transcript ID | LotjaGi3g1v0039900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G03560.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560, mitochondrial; TrEMBL-Plants: tr|A0A072TQC8|A0A072TQC8_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi3g1v0039900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4302486..4305381) extracted from Lotus japonicus Gifu genome v1.2.
GGATTTAATAGAATCAACTACTTGAATGAAAAACATGTTTTTGTGAGACTACTATAGCCATTTTCTGGGAAAACTCCCTC TACACCATAGTGATGAGAAGAATCCCCTTTCCCCTACTGAAACGACCTCCGATCGCACTGACCCACCGAACTCAACCTCC ACACCGCCACAATGCCGCCGCCGCACCACCACCACCACCACCGTTCAGATCCCTATCCACAACCTCTCTCCCCCTCCCTC CCCCGGAGCTCGTCGAGCCATTCTGCGACCTCTCCGACGTCGCCGTCTCCTCCCCGCAACCCTCCCCATGGCTCACCCAA ATCCTCAACCTCCTCGACGGCTCCCCCTCCATGGAATCCAACCTCGACTCCTTCTGCCGCCGCTTCCTCATCGCCCTCTC CCCCGCCTTCGTCGCCCACACCCTCCGCTCTCTCACCGACCCCCACACTGCCCTCCGCTTCTTCACCTGGGCCTCCACAC ACCACCGCCAATACTCCCACACTCTCGACTGCTACGTCTCCCTCATCAACCTCCTCCTCCTCCTCTCCTCCGCCGACCCC GCCGTAATCGCCTCATTCCGAACCGTCTTCGCTGACCTGAAACGCCGCCAGCTCCCGCTCACCGCCCGCGCTGCGAATTC CCTAATCAAGAGCCTCGGCGGCGCTGGCCTGGTGGAGGAGCTGCTGTGGGTGTGGCGCGGGATGAACGAGCACGGCATTG AGCCCGGTCTCTACGCCTACAACTCGCTCCTCAATGGCCTGGTCGGTTCCTCAATGGTGGAGTCCGCGGAGCGGGTTTTC GAGGCGATGAAGGAAGGAAGAACGAAGCCTGATGTGGTCACCTACAACACCTTGATCAAGGGGTTCTGTAAAATTGGGAA AACGCACAGGGCGTTCGAGGTGGTTCGGGAGATGGAGGGTGAGGACATTGGCCCTGATGTGGTTACTTACATGACCCTGA TGCAGGCTTGTTACTCCCATGGGGATGTGGATTGTTGTTTGAGCCTCTACCATGAGATGGAAGATAGAGGGTTAGAGGTT CCGCCGCACGCGTTTAGTTTAGTGATTTGCGGGCTGTGTCGGCAGGGGAAGGTTGCTGAGGGATACGCCGCGTTTGAGAG TATGGTTAGGAGAGGTGTTGAGGCCAACAAGGTAGTGTACACTGCTCTCATTGATTGTTATGGCAAGAGTGGGAACTCTG ATGGGGCTGTGAGGTTGTTTGAGAGGATGAAGATGGAGGGGATCGAGCCGGATGAGGTTACGTATGGTGCTCTTGTTAAT GGGTTGTGCAAGAGTGGGAGAGTGGAGGAAGCTTTGGGTTACTTCAGGTTTTGTGATGAGAATGGGATTGGTGTTAATGC GGTTTTGTATTCGAGTTTGATTGATGGACTTGGGAAGGCTGGGAGGGTGGATGAAGCTGAGAAGCTGTTTGATAAAATGC GTGAGAAGGGGTGTCCGCGGGATTCATATTGCTACAATGTTCTCATTGATGGGTTGTGCAAGTGTGGAAGGATTGATGAG GCTCTTGTTCTGTATGAGCGGATGGAACAAGAAGGTTTCGAACAAACGGTTTATACTTACACGATACTCATCAGTGAGCT GTTTAAGGAGCACAGGAATGAAGAGGCTTTGAAGATGTGGGAGGTGATGATTGACAAAGGTATCACTCCAAATGTTGCCT GTTTCAGGGCTCTTTCCATTGGGTTATGTCTTTCGGGGAAGGTTGCGAGGGCTTGCAAGGTGTTGGATGAGCTCGCCCCC ATGGGTTTTGTTGTTGAAAACGCGTATGAGGACATGATTATTGCGCTGTGCAAAGCCGGTCGCGTTAAGGAGGCCTGCAA GTTGGCTGATGGGGTTGTGGGTAGGGGTAGGGAGATACCTGGGAAGATTCGGACTGTGATGATTAATGCCTTGAGGAAAG CTGGGAATGCAGATTTGGCTATCAAATTGATGCATAGCAAGATTGGTATTGGGTATGACCGATATAGGAGTGTTAAAAAG CGGGTGAAGTTCCAAACCCTTTTTGACAGTTGATTCTATTTCTTCAGCTGGATATTACAGTAGAAAACTATTTCTTCAGC TAGATATGACAGTTGAAAATGTCGCATCTTTGGAAGCTTACTGGAAACTCACGTATGCATATAAGCTATGGTGAGCAACT TCAGCCATTGATACGCTATTTTTATCAACTCAAAAGCGGAAGCAACTTTGGATTCAATGTGAAGGTGCAGTTAGTGTTTA AATGCAAATCTGGAGAAGAATAAAAGTGATAATATTTGGAGTCACACCATTGCTGGAGGCTTAACGACATAGCAGTACTA GGCTGAATGTTGTGAATTGTGATGCCAAATGAGATGCACTTATTGTTTGCAGGATCCATTACCATGCAGATTTGGACCGT CAAATCGTCTTTCCGATATGACGCAGGAGGGGAAAAACAAATCCTTGATAAGAATTTGAAGAACTGGCTGTGTTCTTAGC TTTAAGGGATCATGTATCACCAACAGTTAAATGAACCTGTCTCTTGTGGCAGCGGTTGGGTTAATGATTCTCAAGACCTG TAACTGATTATATTATACATTTGACTGAAGGGGGAGTTTTTTTGTGGAAATTTTCATCTTGCAGACTTTCATATGAGATT GCAGATTTGCAGGGAAAAGATTGGGGAACTCTTCACCTTAATTCTGTCCTGATAACTTTATTTTTCTGAATAAGTTGTGT TGGTTTTGAAAAAATAAAATCAACTTAGTTGTCTAGGCAATATAAATCAGCTAATGATGAACAAAATCAATTTTCTCTTT CAGGCAATTACTCAATTTAGTTGGATAAAATTGATTTTAACATATGTAATTTTTTAACTTTTGTATTGACAAGAAATGAT TTTATATACAACCCAC
CDS sequence (LotjaGi3g1v0039900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAGAATCCCCTTTCCCCTACTGAAACGACCTCCGATCGCACTGACCCACCGAACTCAACCTCCACACCGCCACAA TGCCGCCGCCGCACCACCACCACCACCACCGTTCAGATCCCTATCCACAACCTCTCTCCCCCTCCCTCCCCCGGAGCTCG TCGAGCCATTCTGCGACCTCTCCGACGTCGCCGTCTCCTCCCCGCAACCCTCCCCATGGCTCACCCAAATCCTCAACCTC CTCGACGGCTCCCCCTCCATGGAATCCAACCTCGACTCCTTCTGCCGCCGCTTCCTCATCGCCCTCTCCCCCGCCTTCGT CGCCCACACCCTCCGCTCTCTCACCGACCCCCACACTGCCCTCCGCTTCTTCACCTGGGCCTCCACACACCACCGCCAAT ACTCCCACACTCTCGACTGCTACGTCTCCCTCATCAACCTCCTCCTCCTCCTCTCCTCCGCCGACCCCGCCGTAATCGCC TCATTCCGAACCGTCTTCGCTGACCTGAAACGCCGCCAGCTCCCGCTCACCGCCCGCGCTGCGAATTCCCTAATCAAGAG CCTCGGCGGCGCTGGCCTGGTGGAGGAGCTGCTGTGGGTGTGGCGCGGGATGAACGAGCACGGCATTGAGCCCGGTCTCT ACGCCTACAACTCGCTCCTCAATGGCCTGGTCGGTTCCTCAATGGTGGAGTCCGCGGAGCGGGTTTTCGAGGCGATGAAG GAAGGAAGAACGAAGCCTGATGTGGTCACCTACAACACCTTGATCAAGGGGTTCTGTAAAATTGGGAAAACGCACAGGGC GTTCGAGGTGGTTCGGGAGATGGAGGGTGAGGACATTGGCCCTGATGTGGTTACTTACATGACCCTGATGCAGGCTTGTT ACTCCCATGGGGATGTGGATTGTTGTTTGAGCCTCTACCATGAGATGGAAGATAGAGGGTTAGAGGTTCCGCCGCACGCG TTTAGTTTAGTGATTTGCGGGCTGTGTCGGCAGGGGAAGGTTGCTGAGGGATACGCCGCGTTTGAGAGTATGGTTAGGAG AGGTGTTGAGGCCAACAAGGTAGTGTACACTGCTCTCATTGATTGTTATGGCAAGAGTGGGAACTCTGATGGGGCTGTGA GGTTGTTTGAGAGGATGAAGATGGAGGGGATCGAGCCGGATGAGGTTACGTATGGTGCTCTTGTTAATGGGTTGTGCAAG AGTGGGAGAGTGGAGGAAGCTTTGGGTTACTTCAGGTTTTGTGATGAGAATGGGATTGGTGTTAATGCGGTTTTGTATTC GAGTTTGATTGATGGACTTGGGAAGGCTGGGAGGGTGGATGAAGCTGAGAAGCTGTTTGATAAAATGCGTGAGAAGGGGT GTCCGCGGGATTCATATTGCTACAATGTTCTCATTGATGGGTTGTGCAAGTGTGGAAGGATTGATGAGGCTCTTGTTCTG TATGAGCGGATGGAACAAGAAGGTTTCGAACAAACGGTTTATACTTACACGATACTCATCAGTGAGCTGTTTAAGGAGCA CAGGAATGAAGAGGCTTTGAAGATGTGGGAGGTGATGATTGACAAAGGTATCACTCCAAATGTTGCCTGTTTCAGGGCTC TTTCCATTGGGTTATGTCTTTCGGGGAAGGTTGCGAGGGCTTGCAAGGTGTTGGATGAGCTCGCCCCCATGGGTTTTGTT GTTGAAAACGCGTATGAGGACATGATTATTGCGCTGTGCAAAGCCGGTCGCGTTAAGGAGGCCTGCAAGTTGGCTGATGG GGTTGTGGGTAGGGGTAGGGAGATACCTGGGAAGATTCGGACTGTGATGATTAATGCCTTGAGGAAAGCTGGGAATGCAG ATTTGGCTATCAAATTGATGCATAGCAAGATTGGTATTGGGTATGACCGATATAGGAGTGTTAAAAAGCGGGTGAAGTTC CAAACCCTTTTTGACAGTTGA
Protein sequence (LotjaGi3g1v0039900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRIPFPLLKRPPIALTHRTQPPHRHNAAAAPPPPPPFRSLSTTSLPLPPPELVEPFCDLSDVAVSSPQPSPWLTQILNL LDGSPSMESNLDSFCRRFLIALSPAFVAHTLRSLTDPHTALRFFTWASTHHRQYSHTLDCYVSLINLLLLLSSADPAVIA SFRTVFADLKRRQLPLTARAANSLIKSLGGAGLVEELLWVWRGMNEHGIEPGLYAYNSLLNGLVGSSMVESAERVFEAMK EGRTKPDVVTYNTLIKGFCKIGKTHRAFEVVREMEGEDIGPDVVTYMTLMQACYSHGDVDCCLSLYHEMEDRGLEVPPHA FSLVICGLCRQGKVAEGYAAFESMVRRGVEANKVVYTALIDCYGKSGNSDGAVRLFERMKMEGIEPDEVTYGALVNGLCK SGRVEEALGYFRFCDENGIGVNAVLYSSLIDGLGKAGRVDEAEKLFDKMREKGCPRDSYCYNVLIDGLCKCGRIDEALVL YERMEQEGFEQTVYTYTILISELFKEHRNEEALKMWEVMIDKGITPNVACFRALSIGLCLSGKVARACKVLDELAPMGFV VENAYEDMIIALCKAGRVKEACKLADGVVGRGREIPGKIRTVMINALRKAGNADLAIKLMHSKIGIGYDRYRSVKKRVKF QTLFDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 15 | 45 | 31 | - | – | |
| MobiDBLite | 27 | 45 | 19 | - | – | |
| Gene3D | 86 | 227 | 142 | 1.3E-13 | ||
| PANTHER | 136 | 336 | 201 | 2.4E-128 | – | |
| ProSiteProfiles | 177 | 211 | 35 | 9.514 | ||
| Pfam | 182 | 209 | 28 | 0.13 | ||
| ProSiteProfiles | 212 | 246 | 35 | 10.183 | ||
| TIGRFAM | 214 | 248 | 35 | 7.6E-6 | ||
| Pfam | 215 | 241 | 27 | 0.0011 | ||
| Gene3D | 228 | 336 | 109 | 8.5E-30 | ||
| PANTHER | 244 | 453 | 210 | 2.4E-128 | – | |
| Pfam | 245 | 275 | 31 | 8.6E-15 | ||
| ProSiteProfiles | 247 | 281 | 35 | 13.088 | ||
| TIGRFAM | 249 | 283 | 35 | 2.2E-9 | ||
| Pfam | 281 | 330 | 50 | 1.1E-10 | ||
| ProSiteProfiles | 282 | 316 | 35 | 10.874 | ||
| TIGRFAM | 284 | 315 | 32 | 6.8E-6 | ||
| ProSiteProfiles | 317 | 351 | 35 | 10.008 | ||
| TIGRFAM | 320 | 352 | 33 | 6.1E-6 | ||
| Gene3D | 337 | 413 | 77 | 1.5E-22 | ||
| Pfam | 352 | 400 | 49 | 2.2E-15 | ||
| ProSiteProfiles | 352 | 386 | 35 | 13.033 | ||
| TIGRFAM | 354 | 388 | 35 | 2.1E-10 | ||
| SUPERFAMILY | 355 | 522 | 168 | 2.2E-9 | – | |
| ProSiteProfiles | 387 | 421 | 35 | 11.06 | ||
| TIGRFAM | 389 | 412 | 24 | 1.6E-5 | ||
| Gene3D | 414 | 519 | 106 | 1.3E-33 | ||
| Pfam | 422 | 470 | 49 | 3.0E-16 | ||
| ProSiteProfiles | 422 | 456 | 35 | 13.735 | ||
| TIGRFAM | 424 | 457 | 34 | 2.4E-11 | ||
| PANTHER | 444 | 621 | 178 | 2.4E-128 | – | |
| ProSiteProfiles | 457 | 491 | 35 | 13.702 | ||
| TIGRFAM | 459 | 490 | 32 | 7.3E-10 | ||
| Pfam | 480 | 534 | 55 | 4.3E-6 | ||
| ProSiteProfiles | 492 | 526 | 35 | 11.224 | ||
| TIGRFAM | 494 | 528 | 35 | 9.1E-6 | ||
| Gene3D | 520 | 639 | 120 | 4.1E-13 | ||
| ProSiteProfiles | 527 | 561 | 35 | 7.454 | ||
| ProSiteProfiles | 564 | 595 | 32 | 5.689 | ||
| Pfam | 568 | 584 | 17 | 0.22 | ||
| ProSiteProfiles | 596 | 630 | 35 | 5.196 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0039900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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