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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0040200 |
| Transcript ID | LotjaGi3g1v0040200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G57430.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic; TrEMBL-Plants: tr|A0A0B2PE67|A0A0B2PE67_GLYSO Pentatricopeptide repeat-containing protein, chloroplastic; Found in the gene: LotjaGi3g1v0040200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4333915..4336494) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAACTCCATGCCCACTTGATCAGGTTTGGATTTTCCCACGACCCAAGTTTCAGGAATCATTTGGTATCTCTGTATTC GAAGTGTGGCCGTTTTGGGTATGCACGCAAGCTGGTTGATCAAAGTACTGAAACGGATGTGGTGGTTTCTTGGTCTGCTT TGATATCTGGGTATGTGCAAAATGGGTTTGGGAAGGAAGCTCTGTTGGCATTTAATGACATGTGCATGTTGGGTGTTAAG TGCAATGAGTTCACGTTCCCGAGCGTTCTCAAGGCGTGCTCAATCAAGAAGGATTTGAATATGGGGAGGAAGGTTCATGG CATGTCTGTGGTCACAGGGTTTGATTCTGATGGGTTTGTTGCTAATACTTTGGTTGTTATGTATGCGAAATGCGGGCAGC TTGGTGATTCTAGGAAATTGTTCGGCTCAATTGTGGCGCCGAGTGTGGTTTCGTGGAATGCCTTGTTCTCTTGTTATGTG CAAAGTGATTTCTGTGTTGAAGCAGTGGATTTGTTTAAAGAAATGGTTCGGGGTGGAATAAGGCCTAATGAATTCAGCCT TTCCATTATATTGAATGCCTGTGCTGGATTGCGGAATGGCAGTCTTGGAGGGACTGTTCATGGGCTTTTGCTGAAACTAG GACATGGATTGGATCAATTTTCCGCAAATGCCTTAGTTGACATGTATTCAAAAGGAGGGAGGATTGAAAATGCAGTGGCT GTTTTTGAAGAAATCACCCACCCTGATATTGTTTCTTGGAATGCAGTTATTGCTGGTTGCGTTCAGCATGAGTGTAATGA TTGGGCTTTGGCACTTTTGAATGAGATGAAGAGCTCAGGAGCTTGTCCCAATGTGTTTACCATATCAAGTGCTTTGAAGG CCTGTGCTGCAGTGGGGTTCAAGGACTTGGGTAGACAGTTACATTCTTGTTTGATAAAGATTGATACTGATTCCGATTTT TTTGTAGCTGTTGGATTGATCGACATGTATTCCAAGTGTGAAATGCTCAGTGATGCAAGAAGAGTATATGAGTTGATGCC AAAGAAGGATATCATCGCATGGAATGCTTTGATCTCTGGTTACTCACAGTGCGGTGATGACTTAGAGGCAGTCTCACTTT TTTCTGAAATGCACAATGAGAATGTAGATTTCAACCAAACTACTTTGTCAACAGTTCTCAAATCCGTCGCCAGTTTGCAG GCTATTAAGCTATGCAAGCAAATTCATACACTTTCCATCAAATCTGGAATTTATTCAGATTTCTATGTTATAAACAGTCT TCTTGACACGTATGGAAAATGTAGCCATATAGACGAAGCTTCAAAAATATTTGAAGAGCGCACTTGGGAAGATCTGGTAG CTTACACCTCCATGATAACAGCATATTCTCAATATGGGGATGGAGAGGAGGCTTTGAAGCTATATTTGCAAATGCAAGGT GCAGATATCAAGTCAGACCCATTTGTCTGCAGTTCTCTTTTAAATGCTTGTGCAAATTTATCTGCATATGAACAAGGGAA ACAATTACATGTCCATGCCATCAAGTTTGGATTCATGTCTGATACTTTTGCCAGCAATTCTCTGGTTAATATGTACGCAA AATGCGGAAGCATCGAGGACGCTGATCGCGCCTTTTCTGAGATACCTAAGAGGGGAATTGTCTCATGGTCTGCAATGATT GGAGGGTTGGCTCAGCATGGCCATGGAAAAGAGGCTCTTCAGTTGTTCAACCAAATGCTTAAAGATGGTGTGACACCAAA CCACATTACCTTAGTCAGTGTTCTTTGTGCATGTAATCATGCTGGTTTGGTAAATGAGGGAAAACATTATTTCGAAACAA TGGAGGAAACATTCGGGATTAAACCGACACAAGAGCATTATGCTTGCATGATTGATCTCCTTGGACGATCCGGAAAATTA AACGAAGCAGTGAAGCTTGTAGATTCCATGCCATTTGAGGCTGATGGCTCTGTTTGGGGGGCACTGCTTGGAGCTGCAAG ACTCCATAAGAACATAGAACTTGGAGAGAAAGCTGCAGAGAAGCTTTTGGTTCTTGAGCCAGACAAATCTGGAACTCATA TTCTCCTTGCAAACATCTATTCATCAGCTGAAATGTGGGAAAATGCTGCCAAGGCTAGAAAGCTCATGAAAGAGAGCAAG GTGAAGAAAGAGCCTGGAATGAGTTGGATTGAGATGAAAGACAAGGTATTTACCTTCATTGTTGGAGATAGAAGTCATTC TAGAAGTGATGAAATCTATGCTAAATTGGATCAGCTGAGTGAACTTCTAAGTAAAGCTGGATACAGTCCCGTCATAGAGA CTGATCTACATAATGTGAACCAAAGTGAAAAGGAACAACTCTTATATCATCATAGTGAGAAACTAGCTGTAGCTTTTGGA TTAATTGCCACACCACCTGGAGCCCCTATAAGGGTGAAGAAGAATTTAAGAGTCTGTGTTGATTGCCACACCTTTTTCAA ATTTGTATGTAAAATTGTTTCAAGGGAAATAATTGTCAGAGACATTAATAGATTCCACCATTTTAAAGATGGATCATGTT CCTGTGGTGATTATTGGTAA
CDS sequence (LotjaGi3g1v0040200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTCCATGCCCACTTGATCAGGTTTGGATTTTCCCACGACCCAAGTTTCAGGAATCATTTGGTATCTCTGTATTC GAAGTGTGGCCGTTTTGGGTATGCACGCAAGCTGGTTGATCAAAGTACTGAAACGGATGTGGTGGTTTCTTGGTCTGCTT TGATATCTGGGTATGTGCAAAATGGGTTTGGGAAGGAAGCTCTGTTGGCATTTAATGACATGTGCATGTTGGGTGTTAAG TGCAATGAGTTCACGTTCCCGAGCGTTCTCAAGGCGTGCTCAATCAAGAAGGATTTGAATATGGGGAGGAAGGTTCATGG CATGTCTGTGGTCACAGGGTTTGATTCTGATGGGTTTGTTGCTAATACTTTGGTTGTTATGTATGCGAAATGCGGGCAGC TTGGTGATTCTAGGAAATTGTTCGGCTCAATTGTGGCGCCGAGTGTGGTTTCGTGGAATGCCTTGTTCTCTTGTTATGTG CAAAGTGATTTCTGTGTTGAAGCAGTGGATTTGTTTAAAGAAATGGTTCGGGGTGGAATAAGGCCTAATGAATTCAGCCT TTCCATTATATTGAATGCCTGTGCTGGATTGCGGAATGGCAGTCTTGGAGGGACTGTTCATGGGCTTTTGCTGAAACTAG GACATGGATTGGATCAATTTTCCGCAAATGCCTTAGTTGACATGTATTCAAAAGGAGGGAGGATTGAAAATGCAGTGGCT GTTTTTGAAGAAATCACCCACCCTGATATTGTTTCTTGGAATGCAGTTATTGCTGGTTGCGTTCAGCATGAGTGTAATGA TTGGGCTTTGGCACTTTTGAATGAGATGAAGAGCTCAGGAGCTTGTCCCAATGTGTTTACCATATCAAGTGCTTTGAAGG CCTGTGCTGCAGTGGGGTTCAAGGACTTGGGTAGACAGTTACATTCTTGTTTGATAAAGATTGATACTGATTCCGATTTT TTTGTAGCTGTTGGATTGATCGACATGTATTCCAAGTGTGAAATGCTCAGTGATGCAAGAAGAGTATATGAGTTGATGCC AAAGAAGGATATCATCGCATGGAATGCTTTGATCTCTGGTTACTCACAGTGCGGTGATGACTTAGAGGCAGTCTCACTTT TTTCTGAAATGCACAATGAGAATGTAGATTTCAACCAAACTACTTTGTCAACAGTTCTCAAATCCGTCGCCAGTTTGCAG GCTATTAAGCTATGCAAGCAAATTCATACACTTTCCATCAAATCTGGAATTTATTCAGATTTCTATGTTATAAACAGTCT TCTTGACACGTATGGAAAATGTAGCCATATAGACGAAGCTTCAAAAATATTTGAAGAGCGCACTTGGGAAGATCTGGTAG CTTACACCTCCATGATAACAGCATATTCTCAATATGGGGATGGAGAGGAGGCTTTGAAGCTATATTTGCAAATGCAAGGT GCAGATATCAAGTCAGACCCATTTGTCTGCAGTTCTCTTTTAAATGCTTGTGCAAATTTATCTGCATATGAACAAGGGAA ACAATTACATGTCCATGCCATCAAGTTTGGATTCATGTCTGATACTTTTGCCAGCAATTCTCTGGTTAATATGTACGCAA AATGCGGAAGCATCGAGGACGCTGATCGCGCCTTTTCTGAGATACCTAAGAGGGGAATTGTCTCATGGTCTGCAATGATT GGAGGGTTGGCTCAGCATGGCCATGGAAAAGAGGCTCTTCAGTTGTTCAACCAAATGCTTAAAGATGGTGTGACACCAAA CCACATTACCTTAGTCAGTGTTCTTTGTGCATGTAATCATGCTGGTTTGGTAAATGAGGGAAAACATTATTTCGAAACAA TGGAGGAAACATTCGGGATTAAACCGACACAAGAGCATTATGCTTGCATGATTGATCTCCTTGGACGATCCGGAAAATTA AACGAAGCAGTGAAGCTTGTAGATTCCATGCCATTTGAGGCTGATGGCTCTGTTTGGGGGGCACTGCTTGGAGCTGCAAG ACTCCATAAGAACATAGAACTTGGAGAGAAAGCTGCAGAGAAGCTTTTGGTTCTTGAGCCAGACAAATCTGGAACTCATA TTCTCCTTGCAAACATCTATTCATCAGCTGAAATGTGGGAAAATGCTGCCAAGGCTAGAAAGCTCATGAAAGAGAGCAAG GTGAAGAAAGAGCCTGGAATGAGTTGGATTGAGATGAAAGACAAGGTATTTACCTTCATTGTTGGAGATAGAAGTCATTC TAGAAGTGATGAAATCTATGCTAAATTGGATCAGCTGAGTGAACTTCTAAGTAAAGCTGGATACAGTCCCGTCATAGAGA CTGATCTACATAATGTGAACCAAAGTGAAAAGGAACAACTCTTATATCATCATAGTGAGAAACTAGCTGTAGCTTTTGGA TTAATTGCCACACCACCTGGAGCCCCTATAAGGGTGAAGAAGAATTTAAGAGTCTGTGTTGATTGCCACACCTTTTTCAA ATTTGTATGTAAAATTGTTTCAAGGGAAATAATTGTCAGAGACATTAATAGATTCCACCATTTTAAAGATGGATCATGTT CCTGTGGTGATTATTGGTAA
Protein sequence (LotjaGi3g1v0040200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELHAHLIRFGFSHDPSFRNHLVSLYSKCGRFGYARKLVDQSTETDVVVSWSALISGYVQNGFGKEALLAFNDMCMLGVK CNEFTFPSVLKACSIKKDLNMGRKVHGMSVVTGFDSDGFVANTLVVMYAKCGQLGDSRKLFGSIVAPSVVSWNALFSCYV QSDFCVEAVDLFKEMVRGGIRPNEFSLSIILNACAGLRNGSLGGTVHGLLLKLGHGLDQFSANALVDMYSKGGRIENAVA VFEEITHPDIVSWNAVIAGCVQHECNDWALALLNEMKSSGACPNVFTISSALKACAAVGFKDLGRQLHSCLIKIDTDSDF FVAVGLIDMYSKCEMLSDARRVYELMPKKDIIAWNALISGYSQCGDDLEAVSLFSEMHNENVDFNQTTLSTVLKSVASLQ AIKLCKQIHTLSIKSGIYSDFYVINSLLDTYGKCSHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQG ADIKSDPFVCSSLLNACANLSAYEQGKQLHVHAIKFGFMSDTFASNSLVNMYAKCGSIEDADRAFSEIPKRGIVSWSAMI GGLAQHGHGKEALQLFNQMLKDGVTPNHITLVSVLCACNHAGLVNEGKHYFETMEETFGIKPTQEHYACMIDLLGRSGKL NEAVKLVDSMPFEADGSVWGALLGAARLHKNIELGEKAAEKLLVLEPDKSGTHILLANIYSSAEMWENAAKARKLMKESK VKKEPGMSWIEMKDKVFTFIVGDRSHSRSDEIYAKLDQLSELLSKAGYSPVIETDLHNVNQSEKEQLLYHHSEKLAVAFG LIATPPGAPIRVKKNLRVCVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 109 | 109 | 1.5E-17 | ||
| PANTHER | 6 | 105 | 100 | 1.2E-163 | – | |
| ProSiteProfiles | 15 | 45 | 31 | 6.149 | ||
| ProSiteProfiles | 47 | 81 | 35 | 8.681 | ||
| Pfam | 48 | 93 | 46 | 4.3E-9 | ||
| TIGRFAM | 49 | 83 | 35 | 1.8E-5 | ||
| ProSiteProfiles | 82 | 116 | 35 | 5.897 | ||
| PANTHER | 100 | 195 | 96 | 1.2E-163 | – | |
| Gene3D | 110 | 202 | 93 | 9.5E-10 | ||
| ProSiteProfiles | 117 | 147 | 31 | 6.314 | ||
| Pfam | 147 | 195 | 49 | 4.1E-12 | ||
| ProSiteProfiles | 148 | 182 | 35 | 11.345 | ||
| TIGRFAM | 150 | 184 | 35 | 6.6E-7 | ||
| PANTHER | 190 | 315 | 126 | 1.2E-163 | – | |
| Gene3D | 203 | 314 | 112 | 3.1E-20 | ||
| ProSiteProfiles | 218 | 248 | 31 | 8.013 | ||
| Pfam | 221 | 245 | 25 | 0.021 | ||
| Pfam | 248 | 296 | 49 | 1.3E-10 | ||
| ProSiteProfiles | 249 | 283 | 35 | 10.337 | ||
| TIGRFAM | 251 | 285 | 35 | 7.2E-5 | ||
| ProSiteProfiles | 284 | 318 | 35 | 5.207 | ||
| PANTHER | 303 | 396 | 94 | 1.2E-163 | – | |
| Gene3D | 315 | 404 | 90 | 3.3E-16 | ||
| ProSiteProfiles | 319 | 349 | 31 | 7.048 | ||
| Pfam | 349 | 397 | 49 | 3.4E-9 | ||
| ProSiteProfiles | 350 | 384 | 35 | 10.808 | ||
| TIGRFAM | 353 | 382 | 30 | 2.5E-5 | ||
| PANTHER | 388 | 509 | 122 | 1.2E-163 | – | |
| ProSiteProfiles | 420 | 450 | 31 | 7.026 | ||
| Pfam | 425 | 446 | 22 | 0.49 | ||
| SUPERFAMILY | 437 | 711 | 275 | 8.1E-6 | ||
| ProSiteProfiles | 451 | 485 | 35 | 10.665 | ||
| Pfam | 451 | 499 | 49 | 1.1E-8 | ||
| Gene3D | 452 | 617 | 166 | 2.1E-41 | ||
| TIGRFAM | 453 | 486 | 34 | 4.1E-6 | ||
| SUPERFAMILY | 483 | 712 | 230 | 8.22E-5 | ||
| ProSiteProfiles | 486 | 520 | 35 | 7.267 | ||
| PANTHER | 490 | 717 | 228 | 1.2E-163 | – | |
| ProSiteProfiles | 521 | 551 | 31 | 8.55 | ||
| TIGRFAM | 526 | 554 | 29 | 0.0021 | ||
| ProSiteProfiles | 552 | 586 | 35 | 12.112 | ||
| Pfam | 552 | 598 | 47 | 9.5E-11 | ||
| TIGRFAM | 554 | 587 | 34 | 3.3E-8 | ||
| ProSiteProfiles | 587 | 617 | 31 | 6.401 | ||
| Gene3D | 618 | 772 | 155 | 2.9E-10 | ||
| Pfam | 619 | 650 | 32 | 9.3E-6 | ||
| ProSiteProfiles | 623 | 653 | 31 | 7.651 | ||
| TIGRFAM | 627 | 650 | 24 | 0.0026 | ||
| ProSiteProfiles | 689 | 723 | 35 | 5.853 | ||
| Pfam | 725 | 849 | 125 | 1.1E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0040200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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