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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0041600 |
| Transcript ID | LotjaGi3g1v0041600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Poly [ADP]-ribose] polymerase; TAIR: AT3G14890.1 phosphoesterase; Swiss-Prot: sp|Q84JE8|ZDP_ARATH Polynucleotide 3'-phosphatase ZDP; TrEMBL-Plants: tr|I3S6I9|I3S6I9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0041600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4466756..4474100) extracted from Lotus japonicus Gifu genome v1.2.
GTAGCATGTGTGTCGCCTAGGGCATAAGGAGCATGATGACTTGACTCCACCCTCACCTTCCTCCGGCTTATCACCAACAG TCTACTCATAGTTTCAAACTCAACATTAGCAACTAAACACGAGGGTTGCACTCGTTGCAGACCTTAACCCAACACCTTCC CGCACAAGTTGACAACAACATGAGCTATGACTAAAACCTAACCCAATTTTCTCATCTTCACATTAGTGATGACTGATGAA CCTAATATGGCGCGAAATTTTCAGTCCCTCAGTGGTCGTGAAATTACATTGCTGCCATTCTGAATCTTCTTCTTCTTCCT TCACATTTTGAACACTCTCACTCTACTGTGATCTTTTCATGCTCTCCATCCTCAGATTCTTCGCCGCAAACACCTGTCAC CGCCCTAACATTTTCCCCAAACTCTTCACCGTCCCGGCACCTCCTCCGCCGTTCCGAACCGCCTCCGGTGGACGAAACCC TCTTCTTCCGATGGCGACTCCCGAATCGATAAAGGCGGAGTACGCCAAATCGAACCGTTCTTCATGCAAGGGGTGCTCCA AAACCATCGAGAACAAGTCACTCAGGTTGGGTATCGTCTCCAAGGACAAAACCAGAGGTTTCGAGACTGTCAAATGGCAC CATCTCACTTGCTTCCCTCCGCCATATCCGGATTCTCCTCACATCATCACTGGATTTTCCTCCTTGGAGGTTTTCATTCC CCTCATCTTCGCTTTTCCAAAATTGGGTCAACGATTTTAGGTCAAAGTTTTGTTGCATTTTGTTTCATGTTTGTGTGTTT ACTGTTTTCAGAGTAGTGACCAGGAAGCTGTGAAAGAGTTATTTGAAAGCCATGACTGCTCCGAAGAGAAGGTGAGAGAA CTCGACTTTCGCTGACCCGAATATATGTAGGAAGAGCATTGTAGGGATAAGGGAATATTTGTATTGCTGGGTTGAAATCA TTTCTGTGTTTAGATATATGTTGGTATCGATGTAAACAGACGTTACGCCCCGCACATTTCAGGACAAAATGTAATCAAAA CCAGTGTTGTCAAATCGCGATTGCAGACCATCACGGTGAGCCAAAAATCCGCTATGTCGGCCGCTATTTAGCAGCGAATA GCGGGAATAGCGCGCTATAGTGGGCAATCGCGGCGTCGCGATTAGCCAAAAATCCGCCAGCGCCGCTATAGTCGCTATTT GATAACACTGATCAAAACTTATGAAATGAGATGTATCCAAACACACGCTTAAATGGGGTTTTAGATGTTGAGTTAAGACT TATTATTACTTGAGAACGTCTGATCTTAAAAGCTTTCTGTCAAGCAACAAAACCCTTAAGATTTGCATCCTAGTGGCTGA GCTACTATGCATGTCAGTGTTATCAAATATCCGCCATGGCTGAATCTCATGCGGAATTCTAGCAAGCCGCCATGGCTGAT ATTCCACCATAGTACGCAATCAATATTTATCAAATATGGCCTGTTTTTGGCTTTCTGCCAGACACCATCAATATTTGTCA AATATGGCCTGTTCATCATGCCCTACGTGTTGGGGTGAAGCAATGATGACAATAGCTTATATTTTGAGTCTGTGTCCAAC TAAGATTTCATACAATCATACCTGAAGACGCTTGGACAGGGGAAATGCCTAGTGTGAATCACTTGAGGATATTTTGTTCC CTATGCTATAGACATATGCCAGATTAGAAGAGGAGGAAACTAGAAGATAAAAGTGAGCAGATGGTTCTGCTTGGTTATCA TCCTATAGGAGCAACTTGCTGACACACTAACAAAACCTTTGAAGGTTTAGATGTTTAAGATGCTAAGAGAAAAGTTAGGT GTATCCTTAGTCAATCTGAATTGAAGTGGGAATGTTGTTAGTATTGTTAATTCAGTTTGACAGTTAGAGAAGTTAGTGGT TAATGGTGTAATTAGTGTTAGTTAGTTAGTTGGGTATGTGGTCTATGGTATAGGCTATGTGTATAAAGTATAAACTATAA ATAAGAGCAGTCTGATACATGTCTTAGTTCAGTATATAGTGCAATAAAGAAAAATAGTTTATGACTACTCCTTTGGCCTG ATTTGTTAACTCAAAAGAGGGATCTGGGATGAAATAAGAGGGTTCAAGTCCAATACCTTTTGTCTAAAAGGGAACTCTAA TAGCAATAAAATTTTGATATTTAGTAATGAAAAAAAATTGAAGGGGAGAAAGGCCCATGCTTGGCCACCTTTGCTTCTGT CACTGTTTATGTGTGATTATTATTTTCATTTTGATTTTAATTTCCCCCCTTTTTTGTTTTAACTTGCCTGCTTTTTTAAC TGTAAATAAAACTGTATTGCCTTTTCAATTTTTCTCAAACTTATTCATAATGGTTGTGTTACCCTTTGACAGGTTAGTAA GGCAACAGAAGACATACAAAATGAACAGAAAGAGACTGAAGAAAGTGACTCAAAGAAAAGAAAGGTAACCACTTAAAATG TCAGAGACTCAGTTTCTGAAGTATCGAATACCAACTGTTACATATTGTGTATCCTTGAGAGAGAGGGGCTGGAGCGGGGT TGTGGTTTCTGCTTCCCATTAAGTAGGTTTTTAGTTGTTGGCCTCCATCTTCTATTTAGCATTTCTTCTTCACTGTATGA TGTATTGAAATGTTGTCAATTACCTTTTCCTGTTGGTCTAGATCTCTTGTATGAAGAAAGTCAAGATACTTTGACAAATA TTTGAAACATTATTTCATGAAGAGATATGATTGAAATATTTCTTTATTATTTTTATAGTCATTTGAAAGTCTTACCTGAC ATTCTTAACCATGTATCTAAAAAAGATATAAAGAGTTGAATCAGAATCTGAGAAGTGTCAGTTTCTGTTGTTTTCAGATG GTTATTTTCTCCTTGCAATGCCTTATTGTTAACTCTCTTTGTTCTTCGTGTCTTGCAGTTATCCACATCTGATGTTAAAG CTGTGGTGGACATTAGCTTTTCAGTTTCAGACGTCATGAGCAAGTACAAGGTGAGATTTTGTGCTTTTTTGGCATTATTT GATTACTTTATTACTTTGATGCATGATAGTGAAAGCTTATCTTATTCTTATTACATTGTTGTGCATAATTTTGTTAACTT TTCTTATCCAACTTTTCATTTTTTACTGTTCTGACTTCAATGAGATTATTTTCTGATCCAGGATGCTACCCTTTTACCAA AATGGAAGGCATTCCAGACAGTCATATTTCTTGAGCGGGTGAGATTAATAGTCTTTTTTTGGTAGTTTCGTTAGCTTGTG AAAGGGGAAACCATGTGCAAGATATCCAGTTAAAAATATGAAGGGACAATGCAAACAAAGGTATACTTCTCTGCATGGTT TACATGGTCCTGTTTGTTTTATGCTCTGATAATTTTCAGGATGATGGTCTACATGATTCAAGTAAAATTGCTGCATTTGA TTTTGATGGATGTCTTGCAAACACTGCTGTTAATAGGTATGTCTCCATCTGAAGTCATAACTTTGTGACTATTATTATTA ATGCTATTGGTTTGGGAGTCAATATAAGTGATAAGGCTTCTGGTGAGGTTATGGGCTGCTGTCACCGAAAAGAAGTTATT GGCTTGGATATATTTTAATTTTTAATTATCAACGTTATGGGCTGGTGAGGTTATGTTTATATTTTTTTGTTGTCCCGCTG AAAATCAGAACTTTCTGATTATTGAGAAAGTTAACCTTTTCTTTCAGAGTTGGTCCAAAGGCTTGGTCCCTCATGTATCA GTCAATTCCTGATAAACTACAAAGCTTATACAACAATGGCTACAAGCTGGTGTGTTTCTTCTAACTGTAAAAAAAGCTGA GTATACTTTAGAATTTTGGCTGATTTTAGAAATTGACCATTTATATTCTCCCTCTTTCTGTTATTTGAATCTTTATCCTA TGGAGTAGTGCTGCCAGTATGACGGTGTTGTTTACTCTCTATAGTCATTGCTGTTGACTCCTATAGGTAATTTTCACCAA TGAATCTAATATTGAACGTTGGAAGAAATCGAGACAAAAAGCTGTGGACTCAAAAATTGGACGACTAAATAATTTTATTG AGAAAGTGAAGGTCCCGATTCAGGTGATTTTGTTGGTAACCCAAATGTATCTTTTGTAGTTATGCTATCAGCTGTTCAAT TATGGATTGTTTTTCTGCTGGTTACCAGTTATTATTGCTGTGTTCAGGGAAGGAACTAGGAAAATTAGTTTGGGGGTTGG GGGGGGAGAAAATTTCTAATAAAATTTACAATATCCATTATTAGTCATAAAACTTCAGTAAAATTTTACAATGATTATTT CTATTGAAAAAATACTAACAACACTCACTTCAACATTTTCATTGTAACACTCTTATTGAATGGTTGAAATTTATGAGGTC CAATTAAAATATGAGTCTCCCTTCCAATTTGTTAGGACTCACATGAAGTTCAACTAATAAATGAGAGTGTTAAAGGGAGT GTTACTAGCATTTCTCTTTATATTATTATTAGTTACAAAACTCAATAACCACATAGCATGTTGCTGCGGGTGATTTACAA GAGAAACAATATCAATATTAATACTCAAAACAGTGCAGAATCAATAGAAAATTAAAAGATAAATACGATTGTCATTACAA AAGTAATAAATATAGAAAAGGTTGGTTGTGCGTGTGGACTAAAGAGGTGGGCGAACACAATTTAATTAAACCCTAGCTGT GGGCCTGTCAAGCAAAAAGTTAGGCTACGAGAGGACCTTTAATTAGCTAGTTGCTTGGGAGGGGGGCAAACACAATTTTC TCAGTACCATGTATCGTAATTTTTTGTAATTGTGTGGGGGGGGGGGGATTGTCCTTTTAAGCTAAAGCTGGGTCCGTCCC TAGCTTTGTTCTTCTTTAGTTACCATGTTTGTGATTTCTGGATGTGGATTACATGGTTGAAAATGTCCTTTCTAATTACT TGTGAAACAAAAGCAAGGGCCCGTTTGTTTCTGCTAAAAAAACAAGTGATATTAGAGTTGAATAAAAAATAATAATTTTA TTTTAAGAGATTTATTTTAAAGCAGAAATTAACTTATGTTTGTTTACAAATATAAAAATTGCTTTTCAGTTTAAAAAGTT ACTAGAAATAATTGATTATTCCAAAAGCTACTAGAAATAGCTTAAAAAAATAATTAGAGTTCTGTTTTATTTTCTCAAGT TCTGTTTTTTTTCAAAAACATATACAAGCAGTTCCAAAAATACATTTTTTTTTTTGAAAATAAGTTATTATTTCCCAAAA TAAGCAGAGGCAAACGAGCCCATTAAGCTAAAATGAAAGAGTGATGCATAACTCTTGTAGGCATGGTTGTAATTCTCTCT TTAAGACACCTTGCACACCAATAAGTGTGGATAAAGATCTTCCTCTAGCCTCTTTCTCCTAGGGTTATACATAGTAGTTT TTGAATTACCAAAATATATTTCCCAATATACATATTTATGGAGAAAGAGATGTGGGAAATTATCTTTCATGAAGATACCT TGGTTCTACCCAACCTGGATTTATGCAACTAGATTAGACTATTCAAGCACTTTTACTTTATGATTTCCAACCTGTTGGTC ACAAAAAGGGATTAGACATGTCGAGATACCATCCAACCAGTATTTAATTAAATCAATGGAAGTCCAATGCTTTCGAAAAT AATTTTTCTAAGTCCAAGTCATCTGCATGGTGAATCCAATTTTCCTGTAAATGATTTACACTTCTTTTGTGAATTACTAT TGTAAGAGTAAACATCTTCAGAGTATTGGCATCTCGATTCTGTTTACATCCATAGATGTTAAAATTGGAAATTGAATGTT TTGCACCTTGTGGTTTTCTACACCTTTGAAAATTTAGGTAAAAAGTATTTCACTATGGTGTTGCATGTTTCAGTTATTAT GTAACAAAAGATTAAAGGGGGAAATAAAGCATTTTGTTGTCCATTTGTTATTGAAATTGTTTAGGAAGTACGTGAGAAGC TGACCTTGAGTAACTAAAATTTATCTACACAGGTTTTTATAGCTTGTGGGCTAAGTAACTCAGGCAAAGCTGCCGGAAAG GAAGATGATCCTTATCGCAAACCAAAACCAGGGATGTGGCAACTTATGGAGCAGCACTTCAACTCCGGCATTACCATTGA TATGGATCAGTTATTATTTTTTTCTATTCATTGGCTCAATTGATGCTATGTTTATATTCCTTTTCTTTGTACTCAGAATA ATATGATAGGTTACCCATGAAGTGATGAGAATGTTAACCATGCATTTTCTATGTTGGTAGATCCTTTTATGTTGGTGATG CTGCTGGAAGAAAATCAGATCATAGTGATGCTGATATTAAATTTGCAGAGGTAGTTAAACCATTTTAGCCTTGAACAATT AACTTCATCACTATTTTGTGGCTGGTACTTGAGTATTCATTCCCCCTAGCCTGATTCAAGCATCATGTAGGACATGGTCA GCTTTTCTGTTAAGTGAATAATGGCAACTTGGCAAGGCTCATAACGCAGTCTAAGTGCTTTAAATGAAGTTTATCAAAAT GGATCCCCTGCAGCTCCCTCCGGCCGAATCTTGATTATTGATTTGTAGTTCTAAAGGTCAAGAACTCAAGATTATTGCAT GAAAAATCAATTAATTAAAAAACTTTAACAATTAGTGATGGTAGATTGTTTTATGTGCTCTAGAGGCAGGAGGGTCTTAG AGGATCCAAATCTGAAGTTTATGGGTACATAGTGCGGACTTTATTATCTTAAGCAGCATGTTCACTCTCAATAATATTTT ATGTCATCAATGTTTAATCTTTGCATGTTTGCTGTCTAATTTATTTCTTTATTTAATTTCGGTGGTTGCAGGCCATTGGT TTAAAATTTCATCTCCCTGAAGAGTACTTCAAGGCTTGAGGATCTAATGTGGTCATCGGTTCATAGGTGTAAGGTCCTTT TTTTTGAAGTGACATTACCAACTGGAATGGTATCTAGTTGACTTTGTTTTTGTCGACCGGATATATGAACGTAGACAGAT TAAATTATCTGATGTTGTCCACTAATTTGTAGTCAATCAAAAATTTATTGTTGTTGCTTAAATAATTATGTGGTTTTTCT TTTGGGTACTAAAATAATTCTGTGGTTGTTTAGCTATATTTCATTTTTAAAATAAATATAAGGCTTAATTCCAGTTTGGG CCCTGATGTTTCACGAATGAGCGATTTGCACCCCCCCGTGTTTAAAATGCGTGGTCAAGCCCCCTTATGTATCTAAACTG TGACATTGGTGCCCTTTCGTCAATATCCGTTTGATTCTGTGAGTTGACCAAACGGTTCTCCCTTC
CDS sequence (LotjaGi3g1v0041600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTCCATCCTCAGATTCTTCGCCGCAAACACCTGTCACCGCCCTAACATTTTCCCCAAACTCTTCACCGTCCCGGC ACCTCCTCCGCCGTTCCGAACCGCCTCCGGTGGACGAAACCCTCTTCTTCCGATGGCGACTCCCGAATCGATAAAGGCGG AGTACGCCAAATCGAACCGTTCTTCATGCAAGGGGTGCTCCAAAACCATCGAGAACAAGTCACTCAGGTTGGGTATCGTC TCCAAGGACAAAACCAGAGGTTTCGAGACTGTCAAATGGCACCATCTCACTTGCTTCCCTCCGCCATATCCGGATTCTCC TCACATCATCACTGGATTTTCCTCCTTGGAGAGTAGTGACCAGGAAGCTGTGAAAGAGTTATTTGAAAGCCATGACTGCT CCGAAGAGAAGGTTAGTAAGGCAACAGAAGACATACAAAATGAACAGAAAGAGACTGAAGAAAGTGACTCAAAGAAAAGA AAGTTATCCACATCTGATGTTAAAGCTGTGGTGGACATTAGCTTTTCAGTTTCAGACGTCATGAGCAAGTACAAGGATGC TACCCTTTTACCAAAATGGAAGGCATTCCAGACAGTCATATTTCTTGAGCGGGATGATGGTCTACATGATTCAAGTAAAA TTGCTGCATTTGATTTTGATGGATGTCTTGCAAACACTGCTGTTAATAGAGTTGGTCCAAAGGCTTGGTCCCTCATGTAT CAGTCAATTCCTGATAAACTACAAAGCTTATACAACAATGGCTACAAGCTGGTAATTTTCACCAATGAATCTAATATTGA ACGTTGGAAGAAATCGAGACAAAAAGCTGTGGACTCAAAAATTGGACGACTAAATAATTTTATTGAGAAAGTGAAGGTCC CGATTCAGGTTTTTATAGCTTGTGGGCTAAGTAACTCAGGCAAAGCTGCCGGAAAGGAAGATGATCCTTATCGCAAACCA AAACCAGGGATGTGGCAACTTATGGAGCAGCACTTCAACTCCGGCATTACCATTGATATGGATCAATCCTTTTATGTTGG TGATGCTGCTGGAAGAAAATCAGATCATAGTGATGCTGATATTAAATTTGCAGAGGCCATTGGTTTAAAATTTCATCTCC CTGAAGAGTACTTCAAGGCTTGA
Protein sequence (LotjaGi3g1v0041600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSILRFFAANTCHRPNIFPKLFTVPAPPPPFRTASGGRNPLLPMATPESIKAEYAKSNRSSCKGCSKTIENKSLRLGIV SKDKTRGFETVKWHHLTCFPPPYPDSPHIITGFSSLESSDQEAVKELFESHDCSEEKVSKATEDIQNEQKETEESDSKKR KLSTSDVKAVVDISFSVSDVMSKYKDATLLPKWKAFQTVIFLERDDGLHDSSKIAAFDFDGCLANTAVNRVGPKAWSLMY QSIPDKLQSLYNNGYKLVIFTNESNIERWKKSRQKAVDSKIGRLNNFIEKVKVPIQVFIACGLSNSGKAAGKEDDPYRKP KPGMWQLMEQHFNSGITIDMDQSFYVGDAAGRKSDHSDADIKFAEAIGLKFHLPEEYFKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 46 | 165 | 120 | 1.2E-21 | ||
| PANTHER | 48 | 378 | 331 | 2.2E-108 | – | |
| PANTHER | 48 | 378 | 331 | 2.2E-108 | – | |
| SUPERFAMILY | 51 | 147 | 97 | 2.28E-20 | – | |
| ProSiteProfiles | 51 | 132 | 82 | 20.145 | ||
| SMART | 54 | 129 | 76 | 3.8E-26 | ||
| Pfam | 54 | 127 | 74 | 1.6E-14 | ||
| MobiDBLite | 130 | 161 | 32 | - | – | |
| Coils | 131 | 151 | 21 | - | – | |
| Gene3D | 191 | 380 | 190 | 3.7E-55 | ||
| SUPERFAMILY | 197 | 378 | 182 | 1.52E-35 | ||
| TIGRFAM | 201 | 379 | 179 | 9.8E-61 | ||
| TIGRFAM | 213 | 371 | 159 | 1.2E-38 | ||
| Pfam | 213 | 378 | 166 | 1.3E-46 | ||
| CDD | 213 | 378 | 166 | 6.4452E-70 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0041600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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