Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0048100 |
| Transcript ID | LotjaGi3g1v0048100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase; TAIR: AT4G03510.1 RING membrane-anchor 1; Swiss-Prot: sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1; TrEMBL-Plants: tr|I3SP62|I3SP62_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0048100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5099787..5102637) extracted from Lotus japonicus Gifu genome v1.2.
AATTAGTTTAATAGTTGGTGGCCACCACCACATCCCCACTCATTCATAATCTTCCTTTTCCACATTTTCCTCTCGTCCAT TGCTTCCTTCTCAACCTCCATACCCATTTTCCTTCCATTTCCATTTCCTCTTCCATTGAAGCTGCCTTCATTTTTCTCTT CTTTCAATCCGTTTTCATTGCCCATTGCCATCTGAATCTCTTCTTTTCGAAAGGTATGTTTTTTTTCCTTTTCTTATGTA ATTGTCTGTGGTTGTTCTAATTCGATGTGTAAGATGGAGAATTTTGGTTTTCATTCTGTGTTTTGGGATCAAAATTGGAT TTTTTGAAATGGGTATTGGCTTTTGTTTCCTAAAATGGTTTGCATGCATTGAATTTTCATCTGGGGTATCGTTTTCAAGG TTCCTTTTGATTGCTCTGTTTTTTAGGGATGAATGATGAATCTGCATTAGTTTTGGTTCAATTTGTCTAATGGAATGTAA AAGTGGGAATTTTTTATGAATAATTGTGAAATAACCAAATATATTTGGGAAGAAAATCTTTGTGTTGGGGCTCTCTTCTG GAAATTAGGCTATCATCATTGACATCCATGACCAACTAATAAACGGTGTTTCTTTGGTCTGAGATAATTTTTGTGTATTC CATAATGAGATACTGGCTCTTGCATTTTGTTAGTTGCAGGATCAATGAATATAGAAATGTTCTCTGTTGAAGATCATGAT GAATTATTATAAATTAATCTGTAATATGTAATGATTTGTGGCTCGGGCATATGAATCAATCATATGCATAGAAATGACCA TTTCTTAAGAAATCAACATTGTTGTAAGTGCGTTGCTATACAAACTAAATGTATTAGCACACACATTGAGTTTGAGGTTA AAGGAAGTAAGGAACATTTGGCATATCTAAATAAATAAATTTTATTTGTGATCTCTAGTTATTACTTCAAATTGGAACAA TATCATAAAATTCCAGGTTGATTGCATATATTTGGGTGTTCCTGGAAATATTAAGTAGCTTCTGCGCCATGCTTATTGGA GGTAAAATATAACTGATAATACTACAAGTTACCCTTTAGAAAGAAAGTTTATTCAACATCATAAATTTGTTTAGGAAGTA CATTTACAATTCAGCTTTCTGAAGTTTTAGTTGTCATCTGAATCTCTGATCTTATTGGTTCTTCTCTTAGATCTGGTGTG TCTAAAATAATTGGAGCTTTCTAACATTTTTGAAATCCTTAACAGGTTATATTGCTGTGGGAGAAAATTCAATGGAATCA ACATACTTCGATTCTAATGGGGAAGTCTCACCGAAACAAAAATTGAAATCCACTTCAGCAGAGTCACCAATCTCCAGTAG TGACAATGGTTGTTTTGATTGCAATATTTGCTTGGAATCAGCGCATGATCCTGTGGTCACGCTATGCGGTCATCTGTACT GCTGGCCATGCATATACAAATGGCTCAGTGTTCAGAGCTCCTCAGCCGAACCAGACCAGCAGCAAACATGCCCAATTTGT AAAGCTGAGATCTCTCATACTTCATTAGTCCCCCTTTACGGCCGCGGAACATCTAATTCCGAATCTGAATCCAAGAAACT CCAGATGGGTCTTGGAATACCTCAGAGGCCACCTCCTTACAACTTGAATGCTATGTTAACTTCGAACCGGGCATCGAATC CACATCAAGGTGAGCAACTCTATCCAAGTTATTTCCACTCACAATCACGGCCATTACATTATCAGCAGCACTACCTTTAC GGAACTCACGGTGCCAATGGATTACCTTATCTTGGCGGTGCTGCTATGACTAGTTTCTTTAACCCTGTGATTGGCATGTT CGGGGAGATGGTCTTGACGAGGATTTTCGGGGTCTCTGATGCAAATTTGTTTCCTTACCCCCATAGTGGAAGTGGCAGTC CCAGAATGAGAAGGCAGGAGATGCAGATTGACAAGTCTCTAAACAGAGTTTCTATCTTTCTTTTGTGTTGTATTATTTTG TGTCTTCTCTTATTCTGAAGATATTTTATTTCAGACTGTATAGGCACTTATAATGTGCAGTCCTGAATACTCATGGTGGT GATAGGGATCTACTATAGATTGTGTGATCATGTAGATAGTAGGTTTTAGCATGTTTTGTGGTGATTATGATGACATTATG CGTTTATTTTCTCTTAATTATGATATGAATGTACCTATACGAGAGTTTATGTTCCTGATCGGAAGTCTTATGACTGAGGA GTTTGCAAGTTGGAAGAGTGAAGGTGAATGAATATTCTTAAGAAAACTTTTGAGATGTGTATTGAAGTTGTAACTGGGAT TTGGATCTACTACTTCAGTTGCTTTTTTTTGTTAGTGTCAAGCCTCGTAAATTACCATAACGGTTTTTTTTTCCTTGGGT GCGCAACCAAAGTGCTTAATAAACTGTTTTCCCTTTCATCTGCTAGTATTTATACATACAAGGCTCCTTGTTAATGTTTC ATGTTCTTTGAAAATGGTTTCTTCAAAGCTTGCTGAGAAATATTGATAGACGAATCAGGATAAACACGTATGGGAGGAAG GAAAAAAGTTATCATTGTTGAGTAAACCGTTGTTATTACAGATCCTATGATTCAACATTTCAATGAGAAAAAAAATCGCG TGAGACTTGGCGGATGAGTAGATCCGAGTTACCATCGTTGTACTCTGGCGTGTGAGATGGAGGCGTGTGGGATACGTGCA AGAAACACTTTCATTCCAAAAGAATACTAATTTTGACAGAATAACATTAGGATTTTGATCAATGTAGGTGTATAATGCAA CACTCTTGATGTCTCCTCCTCCTCCTCCTCCTTGTGTTGTTTGTATTTGAC
CDS sequence (LotjaGi3g1v0048100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCAACATACTTCGATTCTAATGGGGAAGTCTCACCGAAACAAAAATTGAAATCCACTTCAGCAGAGTCACCAAT CTCCAGTAGTGACAATGGTTGTTTTGATTGCAATATTTGCTTGGAATCAGCGCATGATCCTGTGGTCACGCTATGCGGTC ATCTGTACTGCTGGCCATGCATATACAAATGGCTCAGTGTTCAGAGCTCCTCAGCCGAACCAGACCAGCAGCAAACATGC CCAATTTGTAAAGCTGAGATCTCTCATACTTCATTAGTCCCCCTTTACGGCCGCGGAACATCTAATTCCGAATCTGAATC CAAGAAACTCCAGATGGGTCTTGGAATACCTCAGAGGCCACCTCCTTACAACTTGAATGCTATGTTAACTTCGAACCGGG CATCGAATCCACATCAAGGTGAGCAACTCTATCCAAGTTATTTCCACTCACAATCACGGCCATTACATTATCAGCAGCAC TACCTTTACGGAACTCACGGTGCCAATGGATTACCTTATCTTGGCGGTGCTGCTATGACTAGTTTCTTTAACCCTGTGAT TGGCATGTTCGGGGAGATGGTCTTGACGAGGATTTTCGGGGTCTCTGATGCAAATTTGTTTCCTTACCCCCATAGTGGAA GTGGCAGTCCCAGAATGAGAAGGCAGGAGATGCAGATTGACAAGTCTCTAAACAGAGTTTCTATCTTTCTTTTGTGTTGT ATTATTTTGTGTCTTCTCTTATTCTGA
Protein sequence (LotjaGi3g1v0048100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESTYFDSNGEVSPKQKLKSTSAESPISSSDNGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLSVQSSSAEPDQQQTC PICKAEISHTSLVPLYGRGTSNSESESKKLQMGLGIPQRPPPYNLNAMLTSNRASNPHQGEQLYPSYFHSQSRPLHYQQH YLYGTHGANGLPYLGGAAMTSFFNPVIGMFGEMVLTRIFGVSDANLFPYPHSGSGSPRMRRQEMQIDKSLNRVSIFLLCC IILCLLLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 228 | 228 | - | – | |
| MobiDBLite | 1 | 30 | 30 | - | – | |
| Gene3D | 5 | 102 | 98 | 3.6E-18 | ||
| PANTHER | 9 | 240 | 232 | 6.6E-77 | – | |
| PANTHER | 9 | 240 | 232 | 6.6E-77 | – | |
| SUPERFAMILY | 34 | 96 | 63 | 5.61E-17 | – | |
| CDD | 35 | 85 | 51 | 1.49904E-26 | – | |
| ProSiteProfiles | 37 | 84 | 48 | 12.888 | ||
| SMART | 37 | 83 | 47 | 2.9E-10 | ||
| Pfam | 37 | 89 | 53 | 5.4E-9 | – | |
| ProSitePatterns | 52 | 61 | 10 | - | ||
| TMHMM | 229 | 247 | 19 | - | – | |
| Phobius | 229 | 247 | 19 | - | – | |
| Phobius | 248 | 248 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0048100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…