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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0054800 |
| Transcript ID | LotjaGi3g1v0054800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dynamin homolog; TAIR: AT1G59610.1 dynamin-like 3; Swiss-Prot: sp|Q9LQ55|DRP2B_ARATH Dynamin-2B; TrEMBL-Plants: tr|I1LVI3|I1LVI3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5724890..5728804) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGCGATCGATGACTTGTCGGAGCTCGCTGATTCGATTCGCCAAGCCGCGGCGCTCCTCGCCGACGAAGACGTCGA TGACTCCAACTCCTCATCTTCCAGACGGCCTTCCACTTTCCTCAACGTCGTCGCTCTCGGCGGTGTCGTAAGTCTCCATT TCTTCATCATCATCTTCACCGTAATTTATCAGTTACATACAATTCATTTCCAATTTTGTAGGGAGCTGGTAAATCCGCTG TTCTCAACAGTTTGATTGGACATCCCGTTTTGGTAAGCTAGATTTCAATTTCCATTTCTCTCGATTTTCCATTTTAGGTT CTCAATTCTACTAGTTTTAGTCTTAGAAGTGATAGTTTTAGTGAAAATTGAAGTGAATGTTTGTGATCTTCAGCCTACTG GCGAAAACGGAGCTACTCGGGCTCCTATATGCATTGATCTGCAGCGAGATACTTCGTTGAGCAGCAAATCGATTATCATA CAGATTGACAATAAGTCCCAGCAAGTCTCTGCAAGTCAGTTTCTCTTGTTAACCAAAGTGTCTGATCTATTCCATTCGCG CGTTTTTTCTTTCTCGAACGAAAGTATTCATGTGCTTTGTTTTGTTTTCCGCAGCTGCTTTAAGACATTCGTTGCAGGAC AGATTGAGCAAGGGCTCCACGGGCAAGAGTCGGGATCAAATACTTTTGAAGCTACGCACTAGCACAGGTTTATTGATCAC TGATTATTGATTTTTTGTTTCCTTACCATGTTCAATTTAGACAATTAGATAGAACTGTATAGCTTTGAAAGGGTAGATTT TGGTTTTACTACCTTTCTCCCCCGCCTCTAATTTTATGTAGCCAGATATGATATATGAAACTGGAGTTTTCTTGTTGAAT TTTAGTCCTTGAAGTTACAGTAGCTCTCACAAAACCTTTGAATTGCTTGGTGCTGCGTGCTTGTATATTTTTACATATGT TTGTTTGTGAAAGTTGGCTTGTATTTAAACACTGAAAAAGTGAAATAGTCTCCTCTATGTAAACATTGAATGAGTTTGTT TATTAGGCAGCTCCAGCTATGTTTGCTGTACCGATTTTCCCCTACACTCCCTAACATTCTTTCCAAAATCTTATCCTCCC AGCACCACCTCTTAAGTTGGTTGATTTACCTGGGTTAGATCAGCGTATCATGGATGGATCGATGGTAAGTGTGTCCTGCA TTTTCCTAAACTATATTTGATTTCCTAACTTTTTGTCTTTTTCTGAAGTTATCATTAAGCAGTTTTGGGTTCTGATGTTA TTTACTTTGGTCCTTGCATAGGTTAGTGAATATGTGGAGCATAATGATGCCATTTTGCTAATTGTTATACCTGCATCTCA AGCACCTGAAGTTGCTACATCTCGTGCTCTTAGAGTTGCAAAGGAATATGATAGCGAAGGTAGATTATTCACGCTCATCT TTTTAGAGGAATGCTTTTTAATAAAACTAGCAAGTAATTTTGCTACTGAGGAGTTGTTTGATTCCTTTCTTCCAATGGTT TTTGCCGCTGTTAATTGACTAAATGGGCAAATTTAATTTTTCATAGGTACCAGAACTGTTGGTGTTATCAGTAAAATTGA TCAAGCTGCAGCAGACCAGAAGTCACTAGCTGCAGTTCAAGCACTTCTAATGAATCAAGGTCCTCCAAAAGCATCAGATA TCCCTTGGGTTGCATTGATTGGTCAATCAGTTTCAATAGCTACAGCTCAGTCTGGATCTGCTGGTTCTGAAAGTTCCTTG GAAACTGCATGGAGAGCAGAGAGTGAAAGCCTCAAGTCCATATTGACAGGAGCTCCTCCGAGCAAGCTTGGAAGGATAGC TTTGGTTGATGCCCTGGCACAGCAGATTCAGAATCGTATGAAGCTTCGGGTCCCTAACCTTCTTTCTGGGTAATTTCCAT GCTGTGCAATTTGATATTATCTTATTGCTATTATGTATCATTGTTTGCATTTGTGGTCTTGTTTGTGGTGGAAACCTAAG AAGTTTACAATAAATAAATGGTTGGTGTTTCTTGGCATTTATGTGAAATGCTTCAGCTTATTGTTTTTTAACTTTTATAT TTTGTTCACCACATGAATAACTATATAAGATTAAATGATTTGTGATATACACAATTGTGTCCTGTTAAAATGCGGTTGTT TTAAAAGGAAAAAATATGTTTTTTTATTGTTGTTTAAAATAGTCTCTTAGTCAATGTGCTCTTTTAATACATCCTTGATT TGATTATCTGAGCTATGTTTTTTCAGATTACTTTTGTTTTCTCACGGGTATTCTTGTTATTTATTAGTTGAATCAGTCTT ATCTGTGAGAAGTCCATATGGAAGTTTAGTAAGTTAAAATAGATAAGGTCAAAACAAACTAGTAGTTAGATCTGTTAGCA TACAACATTCCAGTGGTTCTTGTAGAAGTTCTGGCTATTTGCTAAAACATTGGCAACTGAATTGCTCTCTATGAAATTTG GCTTTCAGTAAGGATTGCCATTTTAGTAAGTGAATTGTATTAATTTTAACTGATGTGATGTTAAGGTTACAAGGAAAGTC CCAGATAGTTCAGGATGAATTGGCGAGGCTTGGTGAGTCAATGGTCACCACTTCAGAGGGTACACGTGCTATAGCCTTGG AACTTTGCCGTGAATTTGAGGATAAGTTCCTACAACACATTACCTCTGGCGAGGTATGTTTTCTCAATCATATATTTTAA TCGAACTTGAATTATTTGCAATGATGCTTATCATTGGGGGGGGGGGGGTGCTATTTCTTTTGTATCCAGTATTTATAGCT TCATTCTTTTGCACACTATAGTATATCTAGGGTCTCTGCACATTAGAAAAAACACTGGGCCCAATTTAATTTTAAGAAAG CAAAGCTTTTTAGGTTTGTGGAAATGAGAAAGAGCTTTATTTGATTGTTTTACATTTAAGATATTCATTATTATTGATCT GGTGCTCTGGTTATAAATATTACTGGTCCACATCCAATATCTGTTAGTTGCCATTTTATATAATGTCAACAACCGATGAT CCCCTGAGATAATCCTTACTCTTTGCACAACCGATGATCCCCTGTGATAATCCATGCGCTAAACACCAAAGGTACCCTCT TGAAATCATACAAGTCCTTTCACCCCGCGGACTGCAAAGATTTATAGACCATGTATTGCCCCAATGCTCTGCTCTCCTTA TTTTACCATTCATTTGGAAGTGAACATGAAATAAGTGATCAATTGAGGGAGAATAAACCCAGTTTCTTAACATATACTAA AAAAGATTATTCCAATTGTGGCTCAGCTGAACACTAGAGAAATAAATGGGGAAGTTTCGTTTATAAATAATTTGGGAATT ATTTTGAAACTTCAGCATTTAATGATAAATTGGTTTTGACATTGTGTTGATGGACAATTAATGTGTTTGTTGCTTGAGTT TGTTATTGTTTGCTGAATTACTATAATTTTATCTGGCAGGGAGCTGGTTGGAAAATTGTTTCCTGCTTTGAGGGGAGATT TCCTGATAGAATGAAGCAATTACCTTTAGATAGGCATTTTGATATCAACAATGTAAAGAGGGTAAGTATTGGACTCCTGG TTCAGTGATATCTTTTTGCATTGCTGCTTTGTTGTTTTTTTTCCCTTTTGTTTGGAGGAGTTACTACTCTCACTGACCCT TTTTGGCTATGATCAGATTGTGTTAGAAGCTGATGGTTATCAGCCTTATCTTATTTCCCCTGAAAAGGGATTAAGATCAT TAATCAAAGGTGTTCTGGAGCTCGCAAAAGAACCATCTCGTCTTTGTGTTGATGAGGTATATGTATAATGAAGTTGAATT TGTACATTCTTCCTCATGTCTTGTGCTTTTTTTGTTTGTTTTCATATTTTCATTTGGTTCGTCAATCAGGTTTAA
CDS sequence (LotjaGi3g1v0054800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCGATCGATGACTTGTCGGAGCTCGCTGATTCGATTCGCCAAGCCGCGGCGCTCCTCGCCGACGAAGACGTCGA TGACTCCAACTCCTCATCTTCCAGACGGCCTTCCACTTTCCTCAACGTCGTCGCTCTCGGCGGTGTCGGAGCTGGTAAAT CCGCTGTTCTCAACAGTTTGATTGGACATCCCGTTTTGCCTACTGGCGAAAACGGAGCTACTCGGGCTCCTATATGCATT GATCTGCAGCGAGATACTTCGTTGAGCAGCAAATCGATTATCATACAGATTGACAATAAGTCCCAGCAAGTCTCTGCAAC TGCTTTAAGACATTCGTTGCAGGACAGATTGAGCAAGGGCTCCACGGGCAAGAGTCGGGATCAAATACTTTTGAAGCTAC GCACTAGCACAGCACCACCTCTTAAGTTGGTTGATTTACCTGGGTTAGATCAGCGTATCATGGATGGATCGATGGTTAGT GAATATGTGGAGCATAATGATGCCATTTTGCTAATTGTTATACCTGCATCTCAAGCACCTGAAGTTGCTACATCTCGTGC TCTTAGAGTTGCAAAGGAATATGATAGCGAAGGTACCAGAACTGTTGGTGTTATCAGTAAAATTGATCAAGCTGCAGCAG ACCAGAAGTCACTAGCTGCAGTTCAAGCACTTCTAATGAATCAAGGTCCTCCAAAAGCATCAGATATCCCTTGGGTTGCA TTGATTGGTCAATCAGTTTCAATAGCTACAGCTCAGTCTGGATCTGCTGGTTCTGAAAGTTCCTTGGAAACTGCATGGAG AGCAGAGAGTGAAAGCCTCAAGTCCATATTGACAGGAGCTCCTCCGAGCAAGCTTGGAAGGATAGCTTTGGTTGATGCCC TGGCACAGCAGATTCAGAATCGTATGAAGCTTCGGGTCCCTAACCTTCTTTCTGGGTTACAAGGAAAGTCCCAGATAGTT CAGGATGAATTGGCGAGGCTTGGTGAGTCAATGGTCACCACTTCAGAGGGTACACGTGCTATAGCCTTGGAACTTTGCCG TGAATTTGAGGATAAGTTCCTACAACACATTACCTCTGGCGAGGGAGCTGGTTGGAAAATTGTTTCCTGCTTTGAGGGGA GATTTCCTGATAGAATGAAGCAATTACCTTTAGATAGGCATTTTGATATCAACAATGTAAAGAGGATTGTGTTAGAAGCT GATGGTTATCAGCCTTATCTTATTTCCCCTGAAAAGGGATTAAGATCATTAATCAAAGGTGTTCTGGAGCTCGCAAAAGA ACCATCTCGTCTTTGTGTTGATGAGGTATATGTATAA
Protein sequence (LotjaGi3g1v0054800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAIDDLSELADSIRQAAALLADEDVDDSNSSSSRRPSTFLNVVALGGVGAGKSAVLNSLIGHPVLPTGENGATRAPICI DLQRDTSLSSKSIIIQIDNKSQQVSATALRHSLQDRLSKGSTGKSRDQILLKLRTSTAPPLKLVDLPGLDQRIMDGSMVS EYVEHNDAILLIVIPASQAPEVATSRALRVAKEYDSEGTRTVGVISKIDQAAADQKSLAAVQALLMNQGPPKASDIPWVA LIGQSVSIATAQSGSAGSESSLETAWRAESESLKSILTGAPPSKLGRIALVDALAQQIQNRMKLRVPNLLSGLQGKSQIV QDELARLGESMVTTSEGTRAIALELCREFEDKFLQHITSGEGAGWKIVSCFEGRFPDRMKQLPLDRHFDINNVKRIVLEA DGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVYV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 437 | 435 | 2.5E-271 | ||
| PANTHER | 3 | 437 | 435 | 2.5E-271 | – | |
| SMART | 4 | 258 | 255 | 2.4E-6 | ||
| Gene3D | 7 | 326 | 320 | 8.1E-43 | – | |
| SUPERFAMILY | 31 | 316 | 286 | 7.34E-36 | ||
| ProSiteProfiles | 37 | 307 | 271 | 53.064 | ||
| PRINTS | 40 | 58 | 19 | 3.0E-13 | ||
| CDD | 43 | 307 | 265 | 3.7449E-55 | ||
| Pfam | 43 | 207 | 165 | 4.6E-32 | ||
| PRINTS | 65 | 82 | 18 | 3.0E-13 | ||
| ProSitePatterns | 66 | 75 | 10 | - | ||
| PRINTS | 177 | 195 | 19 | 3.0E-13 | ||
| PRINTS | 196 | 212 | 17 | 3.0E-13 | ||
| Pfam | 263 | 437 | 175 | 8.5E-13 | ||
| Gene3D | 334 | 438 | 105 | 1.5E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0054800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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