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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0062100 |
Transcript ID | LotjaGi3g1v0062100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | RING/U-box superfamily protein; TAIR: AT4G39140.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q95QN6|BRAP2_CAEEL BRCA1-associated protein homolog 2; TrEMBL-Plants: tr|A0A151RGQ0|A0A151RGQ0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0062100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6557817..6563906) extracted from Lotus japonicus Gifu genome v1.2.
CAATCCCTCATCCAAACACTTTGTTAAAGTTCAATTCAATCTCACCAAGTGGCATCAATCAATCAATAAAATAAAATAAA AATCATCAGAAAACCACGCATCAACTAACGCCGTCACATGCAACGGCGACCCTAAACTAATACTCATACAGTCGACAGTC GACAGTCGACACTCCCTCTAACGCCGTCAAAACAGACGGCGCCGCGCCACCCTCTTCTTCTCTTTTCTCCTTTTCCCTCC TCTCTCTCTCTCTCTGCAACTCTCTCTTTCCACTCTCTCTCTACTTTCTCTCTCTAGAATCTCTCTCTCCTCTTGTTTCC TTCAAAGGTACGCTTCCTCATGTTCTCTGTCTCTATGCAGAAGATTCAACTTCCTATTCATACGTTATTGTTTCATACTT TCATTGTTTGTCTCCATATCTATACTTTTTTTTATTATATTTTTTAATAAATGTGTTATTTATTGTAATAGTTATGGAAA GTTTGATGCTTTTGACTGAGAATTCCGTTTTTTCAGCATTAAATTCGGATCCTTCTGACTTTTTGAGTGACTGTGATGTG AGTGCTCAATTTTCTATATTTGGGGTGTTTGATTTTTTCGATTGGATCATACCCATTACTGGTTTTTTTTTTTAATAATA ATTGATTTGGTGTTTTTTAAAGGGGTTATTTTGTTCCATTTTGCTTGGTGCTGTTTAGTGTTGTTTTTGTGTGTTCTTGG CAGTGTGTTCTTTCTCTGGTGATTTCAGGTTGGTAACATTCATACTTAATATGAGGGTAGAATTTTTGTATTGGATTTGT GTTACATAGACACACTCTGCTGAATTGCTTCAATTTTTCAGTGATTTGTATCCCCTTATAATTTGGGTGGGATGAAAATT TTGGGATGAGTTCCTTGATGAAACTCGCCGTTGAACTTTACTCTTGTGAATTGAAGATTAACCTACTTTTGTGAATTGGA GATTAACCTTTTCGGAACCCTGTGTCATCGGTGTGTTTGTTTTGAAATTTGAATGCAACGAAGGTGAAATCTTACAAGGT GATTTTTTCTGAAGAGGGAAAGGATTTTGAGCTGGTTCACTTTAAAATAAACAGAGTTGAGGTGGATTTAGATATGATCT CTTGAGTTGATTGTCTCTACATCTCTTGAGTTGAAATCTTACAAGGATTTTGATGCCCTTTCTTTATTGATATCTTCTGG TCATTTTTCGGTGGGGTAGTTTAATCTGGAATTGTGTTAAGTTCAGCAAGAATATTGGTTGAGTAACGATTCTAATTTTT ATTTTTCTCAATTTTGTATTTGACTTTCCCATTATCGATCATTTCAATTGATGGTATAGCTTTTTCATCACTGTTTCAAG GAGAGTGCTGTGTTCACCGGTGAATGGATGCTTTTGACGGTTTTTTTCATATAAGAAACTAAATACTGTTCTCTGTTTCA GAATGGGTGCGGCCTGTTGTGTTGCAGCCAAAGATAAAACTATACAAAGCGGTCCAACCAGTGAAATCTTGCAACGGAAT ATTCGATGTTCCCCGACATGGAGCTTCCGGTGGGATCATCGAGGTCGTGTTGCTGGTGAAGATACTTCTATAAATTGGTT TTCTGATGGTATTAACAGGAATGACAGATTGGAGAATAAAAATGAATCATCATATGCATCAGAGGATGGAAGCCCCTTGC AGAATTATCAAAGGAATAGATGGCAGAAATCCCCAATCTCTGAAGGAACTGCTGGACACGGGATAAATTATTCTTCTGGT AACTTTCACTGAACCAACTCTCTTGTTTTAACCATCTGACTACTTGGGTTAAACACTTTTAGACTTGGGGTTTTCAACAG TCTTACCACTCTCTTATTACTTACTATCTGATATGAGATGAATGAGAAACCTATTAAATTGAATGAAACTCATAATCATA TGGCTATTAGGAAGATGTAAAATTTGTCATAGTGGTACATTAAATTTGGATACTTGGTGATGTATTTCACAAACTATCAG ACATAAAAGAATTTATTGAAAACTAGCAATATGTATGGTTTTAATGATAATTCCATAAAAGGAACAAGTTTAGCTTTTTA TCACATTATTGTACTGGTGAATCTAGAGGGAATTAGATAATTTTGAACATGAACTGAACTGTTAGGAATAGACAGCTTCA TAGTGCAAATTAGAATTTTAATATTTCAGTCAATCACTTTGCACAGAATAAACACGAGAATCGAAATAGACCATTAGCAC ATCAACATGTGGCTCTATATCTGTAAAGGGAAACATGGTGCTACAAAGCACCCGCCACGACAAGGTCCAGGGGAGGGTTG GGCCCATTATGGATCTATTGTAGCCTTGTAGGTAGCCTTACCTTGCATATCCCGGGTGTTGAGTCCACATCTCAAACTCA TGACCTCCTAGTCATACGGTACAACTCCAGCGGTTGCACCAAAGATCCCATGTGGCTCTTGATCTAGTCTCTGCCTATTT TAAGCAATGAATGTTAGCATATGAAAAGGGATTGTGCCCCCATTGTTAAAATTAACAGTACCATTATTTTCTAAATTCTC TACCAGTTAAACAGGGCTATAGTGCTGACAGCAGTATAAAAACAATAAGTGACCCTGTGCTCCTGAGTGCTGGTTGATGT GAGATTTCAAAAGGATTTTGGTGAGAGTCTGTTTCAGGTGGCATTAATAGGATTTGCCCTATATTTGAATAGATTATTGA ATCCTTTTGGTTGACCATTGACATTTGATTATCTGATATATGTGATAATGTCGAATGTGCACAAATGAGTAAGTTATTAA GTTTCTCTCACTAATTCATCATCATCCAGTACATGGTCAGGTTAACTAAACCAAACTGAAAACGTTTAAGCTATGATCAT GAAAATTCCGTTTATAAACACCATCTTGGATATTAAGGGTCCATAGTCAAGAAAATTTTATATGCTAGGGCAGGGCTTCT TTCTTTCTCGCTTTCTTTGTTTATTTAGAAGGTGGCTTCACTTGGTTCGCTTCTGCATCCTGTCCTTCTAATCTGTATAC ACCCACAGGAGACATTGATTCTGCTCTTAAAAATATGACCTGTTTTAATTGATTCATTGATTATTATTGTCATGGTTTAT ACATCTGACATGGTTATTCATGTTTATGTCAGATCAATCTATTTCAAGAAACGTTTCCATGGATGTGAGCATTGAACAGG TGAGGTTCTAATACTGAAGGGATCTGTTGTTGTTCAATGTTTTTGTTAGTAGTTTATAGGAGTATATGATTTGATGGACA CATTTCTTACTCATGTATTATTTATAGGGGAAGCAGTTGGTAGAACCATCCTCAGTATCATGTTCTTCTCCCACAAAACA TTCACATTCATTGCCTTCAACTTCATTGTCAGTATCTCCTCTGCCATCCCCTAGTCACCTGCCTCCATCCAGCTCAACAT CATTAAAGCCTTGCCACTCCTCAGGACACCAATTTTTACGGCAAGCTTCTGATAGCAGAGTCCTGGGATTTAAGACACCT AGCAAGTTTGATGTATCTGAAGAAAGGGCAGTGCTTCCTTCATGGAGCAATGAATCTCGCATGCACACCCTTGGTGGATC TTCTGAAAATTGGTCTAGGCCTGGCTTTTCTGAGCTGATGGCCATTTCACATATGGAAAGATGGTCAGTTGATCGTCAGT CTTTTGGTTTAAACTGTGGAAGATTGGGTAAATCCAGTGGTCGGTTCTCAACTTCTCCTGTTGATTTGCAAACATGTGGC ATTTGCTCAAACCTTTTAACTGAAAAGTCTTCTTGGAGCACTCAAAAGATTATTGCGAGTAATGACCTTTCTGTAGTTTC TGTTCTTGTTTGTGGACATACCTATCACTCTGAATGTTTGGAAAGTATGACACCTGATATCAGTAAGTATGACCCAGCTT GCCCAGTTTGCACTTACGGCGAGAAACAAACTCTTAAGTTGTCTGAAAAAGCTCTGAAAGCTGAAATAGAATTGAGGGCT AGAAATAAGAAATCAAGGAACCGAATTGTGGACAGTGATATTGATGATGATTATGTTGTGTTTGATAACTTCAAAGATAG AGGGTGCCAAAGTAAAGGTCCTAGAATGGAGTGTAGTTCGAGTGGGAGAAGCTCTACTGGGAAACCTTTTCTGAAGAGAC ACTTCTCATTTGGCTCCAAGGGTTCCAAATGCATGTTAGATAATCACCCAACACGAAAGAAGGGCTTATTTTGGGCAAAG TCTAGCAAGGAATAGGCTGCTTCTTGGTATTTGAGAGGTAAGTTGCATAATCTTCATTGTGTTGCTTTCACCAGTCTATT AGTAGTATCCTCAACGTTGTCTTATTTCATACGTTATGATTTTATTTTTTTGATTAGACAAAAGATTTCATACGTTATAA TTAAAAAAAGATTTCTAGCATCTGCTTTTCCCTATTCTAGTTAGTTTGGATTTAATTCATGTTTTTCCCCCTTCTTTGAA GCAGGTTCCATTGTTGCTCTTCTCTGCAACCTCTGATAAAATGACTGAGGAAAGGGCAAGATGTCATTCATTTAGCTTTG ACTATTGAACATCTGCATACACCAATCTGGAATTTACTCTGTAAAGAAGAAAATGGAAGACATACAGAAGGATAAGGTAA ATATAGGAAGACAAAGATAGTGTTTATAGACCAGGGTTCTTGTATCTTGTTTTGTACAGGTCAATTTGTTTATTGCATGG ATATAGTTCAAATATCCAAATGATGTCCTGTAATCCATTGTTCTGTTGTTGCATTATACATGCCATTAGCCCTGGGGAGT CTGGTGCTGGGCAATGGTCTTCACAGATTATTGAGCAATACCAATTAGTTTGGTTGACTCTATTAGTTTCTTTTAGCGAA AGAACATTTTTAGAAGAACCTTTTATCAATCAGAGATCAACGCTCTTGTTGGCAAAATGATTTGTGATTTTGGTCTTGCT GGTAGCAGATTGAACCACATTTTTCTCTTTTGTTTTAAATGCATTTGTTGCTTGCTCTTAATGATGTAGTGTGATCCATA TAGCCGACTTCACCTAGTGACATAAGGCTTTTGTTGTTATTGTTGTTTGCATATGTTGTTTGCTGGCAGCTTGTTAATCT TCAAGCCTTCAATTTCAAACTTACACATACACTGATGTTACTAGTTATTGGGCGACAAAAGTGGAATATGTTCTCTCAGA ACTCAGAAGGTTATATATATCGTAACATGTCCTTAATCTCTTATGTATATAAAGGATTGCTTAGGCACTTTTTTTTATAG ATTGACTTTATTAAGATTCATCTATTCAATTTTCATGATTACATTAGGGAATATGGCAAATTGCGTCTGGTTGGTGAGGT GGGTTGGTCCATACTCCAATCCCTCAGAATACCAATCAAGTTTAGTAGCCACGCGTAACCTGCTAACATTACGGGTCAGT CACGACTCGAAGAGTTGATTTGCTGGTTTTTTTGTTCAGTTGGTGCAATGGGTTGGGGTTTCAATCACTAAAAACTTTAT CACTCAAATAACACGTGTATGGCTACTTCTCTCTCTCTCTTCAAATTGAGCTATCTTATCCTATGCTTTTAGGGGAGAAA GTGAGGTTAGCGAGATGAGAGAAGATAATAATGAGAAAGTGGTGAGATAAAAAGTAGATTTTGTAGTTTGGTTAGTATGA TAGAAATATAGGAAACAAAGAAGAGAAAGAATGAGGTTGATGTTCCCTTTGTTAGGTTAAATAAAGAACAAAAAGACAGA AGATTGTGGTGCCAAAACCCGAGTCCATTGGTCAATGACTCAAGTGTGGTATGACAACCAACTCTCTCATCTATATGTAA GCATTGTGTCCGTGACGACCTAGGGGGAATCAGTGACTCTTAGTGATGGCAATATTCACCTGAAGATGGGGATCCCCGTT GGGACTGCCCCGTTTGGGGCCCCGACCTTGGGGAATTTTTCCCTGTGGGGATGGGGATGAGAATGAAAATCTTCCCGATA AGAATTTGGGGATGGGGATTACTCTCCCTGCCCTGTGGAGTCCCCGCCCCATATATATAAGTTAAAATACAATAATACAC TTATAAATAT
CDS sequence (LotjaGi3g1v0062100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCGGCCTGTTGTGTTGCAGCCAAAGATAAAACTATACAAAGCGGTCCAACCAGTGAAATCTTGCAACGGAATAT TCGATGTTCCCCGACATGGAGCTTCCGGTGGGATCATCGAGGTCGTGTTGCTGGTGAAGATACTTCTATAAATTGGTTTT CTGATGGTATTAACAGGAATGACAGATTGGAGAATAAAAATGAATCATCATATGCATCAGAGGATGGAAGCCCCTTGCAG AATTATCAAAGGAATAGATGGCAGAAATCCCCAATCTCTGAAGGAACTGCTGGACACGGGATAAATTATTCTTCTGATCA ATCTATTTCAAGAAACGTTTCCATGGATGTGAGCATTGAACAGGGGAAGCAGTTGGTAGAACCATCCTCAGTATCATGTT CTTCTCCCACAAAACATTCACATTCATTGCCTTCAACTTCATTGTCAGTATCTCCTCTGCCATCCCCTAGTCACCTGCCT CCATCCAGCTCAACATCATTAAAGCCTTGCCACTCCTCAGGACACCAATTTTTACGGCAAGCTTCTGATAGCAGAGTCCT GGGATTTAAGACACCTAGCAAGTTTGATGTATCTGAAGAAAGGGCAGTGCTTCCTTCATGGAGCAATGAATCTCGCATGC ACACCCTTGGTGGATCTTCTGAAAATTGGTCTAGGCCTGGCTTTTCTGAGCTGATGGCCATTTCACATATGGAAAGATGG TCAGTTGATCGTCAGTCTTTTGGTTTAAACTGTGGAAGATTGGGTAAATCCAGTGGTCGGTTCTCAACTTCTCCTGTTGA TTTGCAAACATGTGGCATTTGCTCAAACCTTTTAACTGAAAAGTCTTCTTGGAGCACTCAAAAGATTATTGCGAGTAATG ACCTTTCTGTAGTTTCTGTTCTTGTTTGTGGACATACCTATCACTCTGAATGTTTGGAAAGTATGACACCTGATATCAGT AAGTATGACCCAGCTTGCCCAGTTTGCACTTACGGCGAGAAACAAACTCTTAAGTTGTCTGAAAAAGCTCTGAAAGCTGA AATAGAATTGAGGGCTAGAAATAAGAAATCAAGGAACCGAATTGTGGACAGTGATATTGATGATGATTATGTTGTGTTTG ATAACTTCAAAGATAGAGGGTGCCAAAGTAAAGGTCCTAGAATGGAGTGTAGTTCGAGTGGGAGAAGCTCTACTGGGAAA CCTTTTCTGAAGAGACACTTCTCATTTGGCTCCAAGGGTTCCAAATGCATGTTAGATAATCACCCAACACGAAAGAAGGG CTTATTTTGGGCAAAGTCTAGCAAGGAATAG
Protein sequence (LotjaGi3g1v0062100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAACCVAAKDKTIQSGPTSEILQRNIRCSPTWSFRWDHRGRVAGEDTSINWFSDGINRNDRLENKNESSYASEDGSPLQ NYQRNRWQKSPISEGTAGHGINYSSDQSISRNVSMDVSIEQGKQLVEPSSVSCSSPTKHSHSLPSTSLSVSPLPSPSHLP PSSSTSLKPCHSSGHQFLRQASDSRVLGFKTPSKFDVSEERAVLPSWSNESRMHTLGGSSENWSRPGFSELMAISHMERW SVDRQSFGLNCGRLGKSSGRFSTSPVDLQTCGICSNLLTEKSSWSTQKIIASNDLSVVSVLVCGHTYHSECLESMTPDIS KYDPACPVCTYGEKQTLKLSEKALKAEIELRARNKKSRNRIVDSDIDDDYVVFDNFKDRGCQSKGPRMECSSSGRSSTGK PFLKRHFSFGSKGSKCMLDNHPTRKKGLFWAKSSKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 433 | 433 | 8.5E-230 | – | |
PANTHER | 1 | 433 | 433 | 8.5E-230 | – | |
MobiDBLite | 64 | 83 | 20 | - | – | |
MobiDBLite | 123 | 153 | 31 | - | – | |
MobiDBLite | 123 | 175 | 53 | - | – | |
MobiDBLite | 160 | 175 | 16 | - | – | |
Gene3D | 259 | 331 | 73 | 1.9E-10 | ||
SUPERFAMILY | 270 | 331 | 62 | 8.64E-9 | – | |
SMART | 271 | 329 | 59 | 1.7E-5 | ||
ProSiteProfiles | 271 | 330 | 60 | 10.955 | ||
Pfam | 271 | 329 | 59 | 1.7E-4 | ||
CDD | 271 | 329 | 59 | 1.1394E-4 | – | |
MobiDBLite | 384 | 403 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi3g1v0062100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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