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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0068100 |
| Transcript ID | LotjaGi3g1v0068100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein mago nashi like; TAIR: AT1G02140.1 mago nashi family protein; Swiss-Prot: sp|O23676|MGN_ARATH Protein mago nashi homolog; TrEMBL-Plants: tr|I1JMP2|I1JMP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0068100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:7424190..7426581) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGACCGAAGAAGAGAACGCAGAATTCTACCTTCGATACTACGTCGGACACAAGGGGAAGTTCGGCCACGAGTTCTT GGAATTCGAGTTCCGACCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAAAACGACACCATCATCCGCAAAG AAGTTTACCTAACCCCCGCCGTCCTCCGCGAGTGCCGCCGCATCATCGCCGAGAGCGAGGTCGGTCACCAAACCCTAACT CGCCGCCAAACGGTGTCGTATCCTGTTGCTGTTGTTGTTGTTCTCATTTGTGTTTGTGTTGCAGATCATGAAGGAAGATG ATAATAACTGGCCGGAGCCTGACCGGGTTGGGAGGCAGGAGCTTGAGATTGTGATGGGGAATGAGCATATCTCGTTTACC ACTTCCAAGATTGGGTCTCTGGTGGATGTTCAGAGCAGTGCTGATCCTGAAGGGCTTCGCATTTTCTACTATCTTGTTCA GGTGAGCTTTATTCGGTGCTTGCAAAATGTTTTTGATGAATTTTCTGAGCTAGAATTAAGGAGAATGCAATTATAAGGAA AATTATATGATTGTGTTTTGCTCCATTCGCATGAATTTGAAGATTATGAAATTAGGGTTTAAGCTATGACTAAGGTGCAT TTGGAAGACCTATTTTAGTTTATCTTATAGGATAAGTATTTAAGTAGAAGTTTGGTTAAACTTATTAACTATGAGCTCTT TTGAGTTTATTTTGATAAGCTTGCAACTTATGAATACGAGTTTATGGCCCGTTTAGGAGAGTTTATTTGAGTATATCTTT GAGCATAAGCGCTTATGCAAGTGTTTGAGTGAGCTTATTTAAATAGCTTATGACCTACATATAAGTTGTTCTGAGTTTAT TTTCTGTTCAGATTAGCTTGTGAATAAGAGTTTATAACATGTTTTCAGCTTATTTCAATATGTTTCTCAAATTAACTAAT AAATAAATGCTGATGCAATAAACACTTATTTATGTAATAAAGTACTCATTGGATAAGCGCTTATTGTCATAAGTACTTAA TTAAGCTAGCTCTCTTGAGCATATTTCAATAAGCTTCTTAAATAAGCTTATAAATAAATGCTTATGTGAAAAGTGTTTAT TTACGTAAGTATTTAATTAATCTGTTAACCCTTATACACCCTGCACTTCATTAGAGAGAGACTGAGGGAGATAAATAGAG CATATTTCATTATCTTGTTATGGCTCTGGTTCTCATTATAGTTTGTTCAATCTCAAATTGTACATATGTTCAGCAACATA GATTCTGTGAGAAGGTATAGTTCTGAACAGCAATGCAAATTTGTTCAGTAATATAGCTTAGAACTTTAAGAAAGGTTGGC TTAAAGAAATTCTTTTTACCCAACAATTCTCAAGATAAACCCAAAAAGAAAACACTCTTTCTATAATTATTTTGGCAATT GGGCTATTGGCTTTTGGTAAGAAGAAAAAAAATTGTCCGGTTAATTATAAGTGTAGAATTGTTTTTATCATACGAAGATT AGTGGAGATCTGAGATTCTGAATTGAATATTTGGGCGCTGAAAAAGGAAGAGAGGTTGCACAATTATACTGGTTTATGTT CAATCAACAGCATGCCAAATTTCCCAAGGTAATCTGTAAAGAGAATATCCTGAGTTGATCTGGATTCTGGTCTGGTATAG AACATGTAGATATGGCCTAATTCACTTGACTTTACTATGTAAGATTCACATTGCTAACAAAGTCAAGATATTAAGATTGT TAATACTTTATCTGAAATATTTAGGTTGTTTTGTGGAGCAGAAATTTATAAAGAAGTTAATTAGGGTGTTACACTCATAG AGTGTAGGACTTCCCAGTACATGAAGTTATGGATATCAAATCAAGCTAAACCGAATGAGATCCAAAGGAGCTTGAAAAAC AAACAAAATACGAGCCTCGATGAGGCACTGTGATTGTTAGTAAACTAGTATAAAACTCAAGGTAAAAAACAAAACTGAAA ATAAATTGACCTGGCAATTTGTATAATTCAATACCATACTTGGACCTTTAAAACCCTAATAGTTAAGGTAAGCATTTCAA TTTCATAACTCTAATGTCAATTTAACTTATTTGAAATTCCTTTCTTGTTTTCTTGATTGTATTTCATCATGATTCTTAGA TAGTGATGTGTGTCCTCCTTCTTGTGTTATTAAGTGGTTTTACTCTGTATTCATTAGCTCTAGTCAGTATTAGTACATGC CAATTAGTTTGCTGATTGCCACATTTGATTTATGTCTACTAATGCCTGTGTTTTTAATCTTATTATAACTTCTTTTTGCA GGATTTGAAGTGCTTTGTCTTCTCTCTTATTTCACTTCACTTCAAGATCAAGCCTATATAAGATGTTTACAA
CDS sequence (LotjaGi3g1v0068100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACCGAAGAAGAGAACGCAGAATTCTACCTTCGATACTACGTCGGACACAAGGGGAAGTTCGGCCACGAGTTCTT GGAATTCGAGTTCCGACCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAAAACGACACCATCATCCGCAAAG AAGTTTACCTAACCCCCGCCGTCCTCCGCGAGTGCCGCCGCATCATCGCCGAGAGCGAGATCATGAAGGAAGATGATAAT AACTGGCCGGAGCCTGACCGGGTTGGGAGGCAGGAGCTTGAGATTGTGATGGGGAATGAGCATATCTCGTTTACCACTTC CAAGATTGGGTCTCTGGTGGATGTTCAGAGCAGTGCTGATCCTGAAGGGCTTCGCATTTTCTACTATCTTGTTCAGTTTG TTCAATCTCAAATTGTACATATGTTCAGCAACATAGATTCTGTGAGAAGTTTGCTGATTGCCACATTTGATTTATGTCTA CTAATGCCTGTGTTTTTAATCTTATTATAA
Protein sequence (LotjaGi3g1v0068100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATEEENAEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRECRRIIAESEIMKEDDN NWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGLRIFYYLVQFVQSQIVHMFSNIDSVRSLLIATFDLCL LMPVFLILL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 150 | 150 | - | – | |
| PANTHER | 4 | 142 | 139 | 2.6E-84 | – | |
| PANTHER | 4 | 142 | 139 | 2.6E-84 | ||
| Gene3D | 5 | 148 | 144 | 9.4E-71 | ||
| CDD | 9 | 132 | 124 | 4.68223E-98 | ||
| SUPERFAMILY | 9 | 142 | 134 | 2.49E-65 | ||
| Pfam | 10 | 142 | 133 | 8.6E-67 | ||
| Phobius | 151 | 168 | 18 | - | – | |
| Phobius | 169 | 169 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | RNA splicing | The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. | ||
| Cellular component | Exon-exon junction complex | A multi-subunit complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. |
Expression pattern of LotjaGi3g1v0068100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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