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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0090300 |
| Transcript ID | LotjaGi3g1v0090300.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.2 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|G7LF48|G7LF48_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0090300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:10211803..10217378) extracted from Lotus japonicus Gifu genome v1.2.
TAAAGGAAAAAAAAAATTCTATTTATGCTGCAGCTGCCACCAGCAACTAGGAAATTTCTAAGACAAAATGAATGGTCAGA AAAAAAGTGGATAAGCAAAAGTTTGACTCAAAAGACTATAGTAGCTTGATTTCCATTCTCTTCTTCTCTTCTGTAGTAGC TTGATTTTCTTTGATCCAATCCATGGCTTCTTCGTCCAGCAATGATCAATGGATATACGACGTGTTCATCAATTTCAGGG GAGAAGACACCCGTCAAAGCTTCGTTTCTCATCTCTATGCTGCCCTTTCAACCGCTGGAATCAACGCATTCCTTGACGAT GAGAAGCTTAAAAAGGGATTCGAACTTGGACCAGAACTGTTGCGAGGAATTGAAGGTTCTCGTATATCCTTAGTTGTTCT TTCCCCAAACTATGCTTCATCTAGATGGTGTCTTGATGAACTCATCAAAATCATGGAATGTCGCAGAAAATATGGGCAGC TGGTAATTCCTATATTTTACAACGTTGATCCATCGCACGTGCGACGTCAGGTGGGTGCTTTTCATTTGACAGCAAGAGAT GCATACGTTGGCTTGAGTTGGAAAAACGCGCTCACAAAAGTTGGAGGTTTGTCTGGTTGGGACTTGAGCAAATTTAGGTA AATCAATATCCCCTCCGTTTCTATATAACTGTAACTATTTTGATGTTTCTTCTGTTTCTATTTACTACTTGTCACTTTTA CAATTTGAAAAGAGCATTAATTATGTTTTACTAATTGTACCCTAACTTATTAGTGGTAGGAAAATTGAAAATAGAGAATT AGTAAGAGAGATAAGAGATATATTACAAAGTTTAATAATAATTTTAATAAAACTAGAACATTATATGATATTCCTTAATA CATGTAGCACAACATTAAAATGACAGATATTAAGTTCAAAAAAGTGACAGATATTAAGGAACGGAGCGAGTACTTTCTGC TTGCTAGATAGTTTCTTTTATTTGAAAATAAAGCCTATATGCTCATTTCTATCTGTTCTGTACTTGTTTATTGTTATCAT TATTATTATTGAAGGAGTCAAGCTGAAGCTGTTGAGGTAAGTTATGGTAGGGATATGGGGAATGGGGGGATGGGGTAAAA CAACCACAACCAAAGCCATCTTCAATAGAATCCATCGCAAATTTGAGAAAGTGATAGAACTAGAGGGTATATTCATCTAC AAGAACAATTTTTCTTTCTGATGTGATGTAATAAGAAGTTAGAGATTGTGAGAAAAGTGATGTGTATATGAGGTGTATTG TTTGGTAGAGAGCTTATAATCTTTAATAATCTTTGCTGAGTCTGTGTGCTTCATGACTGTTACATATTTGTAGGAATGAA GGTGATCTAGTGAAGATAATTGTTGAGGATGTTTGGTCAAAACTCGACTATACATTCTTGTCTATTACCGAATTCCCAGT TGGATTGGAATCCCGTGTGCAAGAAGTGACTAGGCTGGTTGGGAACCAAACAAGAATAGTTCGTATGGTAGGGATCTGGG GGATGGGAGGGTCAGGTAAGACAACCACAGCCAAAGCAATCTTCAATCAAATCCATCTTAAATTCATGTGTAGAAGTTTC ATTGAAAACATTAGAGAAGTTTGTGAAAGCGATAGTACCAGAGGACTTATTAATTTACAAGAACAACTTCTCTCTGATGT CCTGAAAACAAAGGAGAAGATACATAGCATTTCCATGGGGACAGCTATGGTCGAGAAAAGACTCAAGTCGAAAAGGGCTC TCATCATACTTGATGATGTTACCACATCTAAGCAGTTGAAAGCCTTGTGTGGAAATCATCAATGGTTTGGATCAGGAAGT GTAATAATTGTTACAACTAGAGATGTGCGCCTACTTAAATCACTTAAAGTCGATAACGTTTATAAAATGGAGGAAATGAA CCAAACAGAATGCCTGGAGCTTTTTAGTTGGCACGCTTTTGGAGAAGCAAGTCCAAGAAAAAACTTGATTGGACTCTCAA CAAATGTAGTTGCTTATTGTGGAGGGTTACCACTAGCTCTTGAAGTCCTTGGGTCTTACTTAAATGAGAGGGAAGAACTA GAATGGAAAAGTGTATTGTCAAAACTAGAGAGAATTCCAAATGATCAAGTGCAAGAGAAACTCAGAATAAGTTATGACGG CTTAAAGGATGAGCTGGAAAAGGATATATTTCTTGACATATGTTGTTTCTTTATTGGTAAAGGCAGAGTCAATGTTACAG ATATACTAAATGGTTGTGGACTTCACGCTGATATTGGAATAACTATCCTCATAGAGCGTAGCCTCATAAAAGTTGACAAG AACAACAAGCTTCGAATGCATGATTTGGTACGAGACATGGGAAGAGAAATTGTTCGTGAATGTTCGACAAAAGATCCTGG GAAGCGTAGTCGGTTGTGGTTTCATGAGGATGTCCATGATGTTTTGACCAAATATATAGTAAGAATACATATTAAAACTT TTGATTATCCCCCACAATCTTTTCAGGATCATAAAACTCTTTGAGTGTTTGACTTATCATGTTCATTGCAAGTGTGGTTA AGCTATGCTGCTGGAGCTTTATGTATAGAAGATAAAAACTGTTTCCCTTACTTTTTCTCTGTTTATTTATTCTTCACATG CAGGGAACAGAAACAGTTGAAGGATTGATTTTGAAGTTGCAAAACACCGGCAGAGTTTGCTTCAGTGCTAATGCTTTCAA GGAAATGAGAAAACTGAGACTCTTACAACTTGATTGTGTTGACCTCACTGGAGACTTCGGGCATTTGTCCCATGAACTGA AATGGGTCTATTGGAAAGGATTTACTTCCACATATCTGCCCAATCACTTTTATCAGGGAAATCTAGTTGTTCTAGAATTA AAGTACAGCAGTATTAAAAGAGTTTGGAAGGAAACCAAGGTATAGAACTCAAAGGTTGATGACTGTAGATAGTTTGTTGT TTTCCCATTTTCTCCTAATTTTTCTTATAATCATTTATCTTCTTGCAGTTACTTGTGAAGCTAAAAATTCTCAATCTCAG TCATTCAAAGTACTTGGTAAACACCCCTGATTTTTCAAAACTACCGAATCTAGAAAAGCTCATTCTAAAGGATTGTCCAA GTTTGTTCGAGCTACACCATTCCATCGGAGATCTCAGGAACCTTCTTCTAATAAATTTGGAGGACTGTACAAACCTTAAC AATCTCCCAGGGAAGACCTATCAGTTAAAGTCAGTGAAAACTCTCATCCTTTCAGGTTGTTCAAAAATTGACAAGTTGGA AGAAGATATAGTGCAGATGGAATCCTTGACAACACTCATTGCAAAAGATACGGCTATAAAGGAAGTGCCCTATTCAATAC TTGGATTGAAAAACATAGGGTACATATCTCTATGTGGATATGAAGGATTATCACGTGATGTTTTTCCTTCTCTCTTTCGG TCTTGGATTTCACCAACAATGAATCCCCTATCCCGTATTCCCCTATTTGCGGGCATGTCATTGCCTCTAGTTTCTATGGA TATACAGAATTATAGTTCAGGCAATTTATCTTCATGGCTTGGCAGCCTATCAAAACTTAGAAGTGTTTGGATACAATGTC ACTCAGAGATTCAACTAACTCAAGAGTCAAGAAGAATTCTTGATGATCAATATGATGTAAATTCTATGGACTTGGAAGCA TCATCATCATCATCATCATATGCATCACAAATCTCAGATTTTTCCTTGAAATCACTTTTGATTAGATTGGGAAGTTGCCA CACAGTCCTTGATACTCTTGCCAACAACATATCACAGGTGTCTTCTCTACCTTCTCACCTTGTACTGATCTTTATTATTA ATTAGGGAAGTCTTTTCTATTTGCATTTGTTTGCTTAAAGCTGAAAATTTCCATATGATACGACTTTATTCAAGTATCTG CGCGATAAACTAATTTTAGTGTGATCATAAAATTTCAGTGATGGTAAATTTATGTGTATGTTATAATGGTAGGAGCTATA CAATTAATCAAAATAAACTCTAATGAAGGTGATGATTCACATTCTCAATAGAGTCTAATGTTGTCAAGAAAGAAATGACT GGTATCCATTCTACAGCTTGAGGAGTGTTGGAAGTCAATCTTTTGAACATTTTGAGAATTATATATCATAGTTAGAGGGA TTGTGGTAATCTTTTGCTTTCGGTAAAAGTTTTGCAGCCATTATACTAAATTTATTGATGCATGGAATTGGTTCTAACTT TCTAGTGTTAATGATTGCGTTACAAAACTATCTTTCCTTGTCTTAGTTTTTCTACATGCAACATACTATCATTTTATTTA ATATTCACCTTTTGAAATTAAGAATGACATATTACATGGAACGGAAAGTCCATTTGAATGATTAAATAACCGAATGTATG TTCTTGATACAGGGACTGACAACCAACGATTCTAGTAATTTTTTCCTTCCGGGTGGTAATTATCCTTCTTGGTTAGCCTA TAAAGGTGAAGGACCTTCAGTGCATTTTCAAGTTCCTGAGGATTGTGATTGTTGCTTGAAGGGAATAGTTTTATGTGTTG TTTATTCATCAACACCTGAAAATATAGCGACTGAATGTCTTACAAGTGTCATGATAAATAATCGCACAAAATTCACCATT CAAATCTACAAGCAAGATACTGTAATGTCCTTTAATGATGAAGATTGGGAGAGTGTAAAATCAAATCTTGATCCTGGTGA CAATATGGAGATTGTTGTTTCTTTTGGGCGTGGATTGACTGTTAAGGAGACAGCTGTGTATCTAATAAATGCTCAGTCAA TTACTATGGAAATTGAGCCATCACCAGAAGTGAACATGCAGCCATCACCTAGCATGAAAATGGAGCCATCACCAAAGCCA ACAAAACATATCTTTACAAGACTTGCAAAGAGAATCAGAAAATGTTCATGTTTGAACCAGAATTGAGATTTCAACAATTT CTGATTGACCAAGGCTTTGTCATAATAAGGGATTTCCTTGTTTTATGTATGTGTTTTGCAAAATTTTCTAGGAGGGAGGA GGGACAGTGCCATGTTTTATGAACATAGTGGAGAATTCATGTGGTTGTTGTGTGTTTAAATGAATATGGTTCTGAAAACG TTAAGAGTTCATTTCTTGTTTTTCTGGCCCTCAAGATTGCTGGACTAGATGTTATGCAACAGCTAGATAAAAGATGATAT TAATGTGCAAGTCTAGAGAAGGTTGCTGGGTATTATTAGTATACAGCAGTTTTATGTTTGGAGTGGAGAAGTTTGAAGTA TTGGATTTTGAGGGCATCATGTGAATAATAATGTATGCACACTACAGGAGGATATTGTTTCATTTAATTTTTATGAAATG GAAGATTGTGCAGTCAATTTCATGGTGTATGTTGCTCTATTATATTCACTGCCTAGCTTGTGCTGATGTGATACGTTTTA TATTATCTCTATTACCATTTTTATGTCTGTAACTCTGTATTACTGTGCTCATGCTTCATTCAATATCAGATGGTAATTAG TTGTAAACATGTTATTATAACACATGCCTTTAAAATTTAAATAGGATACCAGCGAG
CDS sequence (LotjaGi3g1v0090300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTCGTCCAGCAATGATCAATGGATATACGACGTGTTCATCAATTTCAGGGGAGAAGACACCCGTCAAAGCTT CGTTTCTCATCTCTATGCTGCCCTTTCAACCGCTGGAATCAACGCATTCCTTGACGATGAGAAGCTTAAAAAGGGATTCG AACTTGGACCAGAACTGTTGCGAGGAATTGAAGGTTCTCGTATATCCTTAGTTGTTCTTTCCCCAAACTATGCTTCATCT AGATGGTGTCTTGATGAACTCATCAAAATCATGGAATGTCGCAGAAAATATGGGCAGCTGGTAATTCCTATATTTTACAA CGTTGATCCATCGCACGTGCGACGTCAGGTGGGTGCTTTTCATTTGACAGCAAGAGATGCATACGTTGGCTTGAGTTGGA AAAACGCGCTCACAAAAGTTGGAGGTTTGTCTGGTTGGGACTTGAGCAAATTTAGGAATGAAGGTGATCTAGTGAAGATA ATTGTTGAGGATGTTTGGTCAAAACTCGACTATACATTCTTGTCTATTACCGAATTCCCAGTTGGATTGGAATCCCGTGT GCAAGAAGTGACTAGGCTGGTTGGGAACCAAACAAGAATAGTTCGTATGGTAGGGATCTGGGGGATGGGAGGGTCAGGTA AGACAACCACAGCCAAAGCAATCTTCAATCAAATCCATCTTAAATTCATGTGTAGAAGTTTCATTGAAAACATTAGAGAA GTTTGTGAAAGCGATAGTACCAGAGGACTTATTAATTTACAAGAACAACTTCTCTCTGATGTCCTGAAAACAAAGGAGAA GATACATAGCATTTCCATGGGGACAGCTATGGTCGAGAAAAGACTCAAGTCGAAAAGGGCTCTCATCATACTTGATGATG TTACCACATCTAAGCAGTTGAAAGCCTTGTGTGGAAATCATCAATGGTTTGGATCAGGAAGTGTAATAATTGTTACAACT AGAGATGTGCGCCTACTTAAATCACTTAAAGTCGATAACGTTTATAAAATGGAGGAAATGAACCAAACAGAATGCCTGGA GCTTTTTAGTTGGCACGCTTTTGGAGAAGCAAGTCCAAGAAAAAACTTGATTGGACTCTCAACAAATGTAGTTGCTTATT GTGGAGGGTTACCACTAGCTCTTGAAGTCCTTGGGTCTTACTTAAATGAGAGGGAAGAACTAGAATGGAAAAGTGTATTG TCAAAACTAGAGAGAATTCCAAATGATCAAGTGCAAGAGAAACTCAGAATAAGTTATGACGGCTTAAAGGATGAGCTGGA AAAGGATATATTTCTTGACATATGTTGTTTCTTTATTGGTAAAGGCAGAGTCAATGTTACAGATATACTAAATGGTTGTG GACTTCACGCTGATATTGGAATAACTATCCTCATAGAGCGTAGCCTCATAAAAGTTGACAAGAACAACAAGCTTCGAATG CATGATTTGGTACGAGACATGGGAAGAGAAATTGTTCGTGAATGTTCGACAAAAGATCCTGGGAAGCGTAGTCGGTTGTG GTTTCATGAGGATGTCCATGATGTTTTGACCAAATATATAGGAACAGAAACAGTTGAAGGATTGATTTTGAAGTTGCAAA ACACCGGCAGAGTTTGCTTCAGTGCTAATGCTTTCAAGGAAATGAGAAAACTGAGACTCTTACAACTTGATTGTGTTGAC CTCACTGGAGACTTCGGGCATTTGTCCCATGAACTGAAATGGGTCTATTGGAAAGGATTTACTTCCACATATCTGCCCAA TCACTTTTATCAGGGAAATCTAGTTGTTCTAGAATTAAAGTACAGCAGTATTAAAAGAGTTTGGAAGGAAACCAAGTTAC TTGTGAAGCTAAAAATTCTCAATCTCAGTCATTCAAAGTACTTGGTAAACACCCCTGATTTTTCAAAACTACCGAATCTA GAAAAGCTCATTCTAAAGGATTGTCCAAGTTTGTTCGAGCTACACCATTCCATCGGAGATCTCAGGAACCTTCTTCTAAT AAATTTGGAGGACTGTACAAACCTTAACAATCTCCCAGGGAAGACCTATCAGTTAAAGTCAGTGAAAACTCTCATCCTTT CAGGTTGTTCAAAAATTGACAAGTTGGAAGAAGATATAGTGCAGATGGAATCCTTGACAACACTCATTGCAAAAGATACG GCTATAAAGGAAGTGCCCTATTCAATACTTGGATTGAAAAACATAGGGTACATATCTCTATGTGGATATGAAGGATTATC ACGTGATGTTTTTCCTTCTCTCTTTCGGTCTTGGATTTCACCAACAATGAATCCCCTATCCCGTATTCCCCTATTTGCGG GCATGTCATTGCCTCTAGTTTCTATGGATATACAGAATTATAGTTCAGGCAATTTATCTTCATGGCTTGGCAGCCTATCA AAACTTAGAAGTGTTTGGATACAATGTCACTCAGAGATTCAACTAACTCAAGAGTCAAGAAGAATTCTTGATGATCAATA TGATGTAAATTCTATGGACTTGGAAGCATCATCATCATCATCATCATATGCATCACAAATCTCAGATTTTTCCTTGAAAT CACTTTTGATTAGATTGGGAAGTTGCCACACAGTCCTTGATACTCTTGCCAACAACATATCACAGGGACTGACAACCAAC GATTCTAGTAATTTTTTCCTTCCGGGTGGTAATTATCCTTCTTGGTTAGCCTATAAAGGTGAAGGACCTTCAGTGCATTT TCAAGTTCCTGAGGATTGTGATTGTTGCTTGAAGGGAATAGTTTTATGTGTTGTTTATTCATCAACACCTGAAAATATAG CGACTGAATGTCTTACAAGTGTCATGATAAATAATCGCACAAAATTCACCATTCAAATCTACAAGCAAGATACTGTAATG TCCTTTAATGATGAAGATTGGGAGAGTGTAAAATCAAATCTTGATCCTGGTGACAATATGGAGATTGTTGTTTCTTTTGG GCGTGGATTGACTGTTAAGGAGACAGCTGTGTATCTAATAAATGCTCAGTCAATTACTATGGAAATTGAGCCATCACCAG AAGTGAACATGCAGCCATCACCTAGCATGAAAATGGAGCCATCACCAAAGCCAACAAAACATATCTTTACAAGACTTGCA AAGAGAATCAGAAAATGTTCATGTTTGAACCAGAATTGA
Protein sequence (LotjaGi3g1v0090300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSSSNDQWIYDVFINFRGEDTRQSFVSHLYAALSTAGINAFLDDEKLKKGFELGPELLRGIEGSRISLVVLSPNYASS RWCLDELIKIMECRRKYGQLVIPIFYNVDPSHVRRQVGAFHLTARDAYVGLSWKNALTKVGGLSGWDLSKFRNEGDLVKI IVEDVWSKLDYTFLSITEFPVGLESRVQEVTRLVGNQTRIVRMVGIWGMGGSGKTTTAKAIFNQIHLKFMCRSFIENIRE VCESDSTRGLINLQEQLLSDVLKTKEKIHSISMGTAMVEKRLKSKRALIILDDVTTSKQLKALCGNHQWFGSGSVIIVTT RDVRLLKSLKVDNVYKMEEMNQTECLELFSWHAFGEASPRKNLIGLSTNVVAYCGGLPLALEVLGSYLNEREELEWKSVL SKLERIPNDQVQEKLRISYDGLKDELEKDIFLDICCFFIGKGRVNVTDILNGCGLHADIGITILIERSLIKVDKNNKLRM HDLVRDMGREIVRECSTKDPGKRSRLWFHEDVHDVLTKYIGTETVEGLILKLQNTGRVCFSANAFKEMRKLRLLQLDCVD LTGDFGHLSHELKWVYWKGFTSTYLPNHFYQGNLVVLELKYSSIKRVWKETKLLVKLKILNLSHSKYLVNTPDFSKLPNL EKLILKDCPSLFELHHSIGDLRNLLLINLEDCTNLNNLPGKTYQLKSVKTLILSGCSKIDKLEEDIVQMESLTTLIAKDT AIKEVPYSILGLKNIGYISLCGYEGLSRDVFPSLFRSWISPTMNPLSRIPLFAGMSLPLVSMDIQNYSSGNLSSWLGSLS KLRSVWIQCHSEIQLTQESRRILDDQYDVNSMDLEASSSSSSYASQISDFSLKSLLIRLGSCHTVLDTLANNISQGLTTN DSSNFFLPGGNYPSWLAYKGEGPSVHFQVPEDCDCCLKGIVLCVVYSSTPENIATECLTSVMINNRTKFTIQIYKQDTVM SFNDEDWESVKSNLDPGDNMEIVVSFGRGLTVKETAVYLINAQSITMEIEPSPEVNMQPSPSMKMEPSPKPTKHIFTRLA KRIRKCSCLNQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 2 | 146 | 145 | 1.44E-40 | ||
| Gene3D | 5 | 175 | 171 | 3.1E-61 | ||
| PANTHER | 7 | 1030 | 1024 | 0.0 | – | |
| PANTHER | 7 | 1030 | 1024 | 0.0 | – | |
| ProSiteProfiles | 10 | 146 | 137 | 26.875 | ||
| SMART | 11 | 143 | 133 | 2.2E-43 | ||
| Pfam | 12 | 175 | 164 | 3.2E-43 | ||
| SUPERFAMILY | 171 | 434 | 264 | 3.32E-58 | ||
| Gene3D | 176 | 336 | 161 | 1.9E-27 | – | |
| Pfam | 193 | 413 | 221 | 1.0E-28 | ||
| PRINTS | 203 | 218 | 16 | 2.4E-23 | – | |
| PRINTS | 281 | 295 | 15 | 2.4E-23 | – | |
| Gene3D | 340 | 430 | 91 | 2.8E-7 | – | |
| PRINTS | 374 | 388 | 15 | 2.4E-23 | – | |
| SUPERFAMILY | 479 | 809 | 331 | 1.81E-29 | – | |
| Gene3D | 522 | 850 | 329 | 1.3E-25 | ||
| PRINTS | 683 | 699 | 17 | 2.4E-23 | – | |
| MobiDBLite | 1012 | 1031 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi3g1v0090300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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