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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0096800 |
| Transcript ID | LotjaGi3g1v0096800.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT5G54520.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q64LD2|WDR25_HUMAN WD repeat-containing protein 25; TrEMBL-Plants: tr|A0A072TR58|A0A072TR58_MEDTR Transducin/WD-like repeat-protein; Found in the gene: LotjaGi3g1v0096800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12036649..12042474) extracted from Lotus japonicus Gifu genome v1.2.
CCATTAACTTAATACTGCGCTGAATCGATGATCGAGCCAAAGATGGATGGACCCTTGTTATAAACCAAAAGGAAAAACAA TATAACCCCCGAGAAGAAGAGAAGAAGGAGGTGAGAGGCAGCAGCCAAGAGGAGCAAAGATGGATCTCCTGTGCGACGCG TATTCGAATGCTTCAGACGAAGAAAGAGAGGAACAACCCAAACGACACAAGCCATCATCAAACTCTTCTTCAAACCCACC AAAACCCCATCTCTTCATTCCTAATCCTCACTACCCTCAAACACCACAACCTCCAATCCCTGGAACCTACGTCTCCAAAC GACAACGCGCGTCGATGGGAAACCTCGCCGCTTCTCTCCCTAACCCTGATCCCGCTCCTTCTTCATTCATACGAACAGGT ACATCATCAATTTTGCCAACTACTGAAACTGTTTCAATTTTGATGAAGAATTTAGTTTTCGTGTTTAACTTGTTACTCTA TTGTCTAATCTTGTGTTGATTTGATGAGGGTTAAAATTATTACCTGAGATGTTAAAATGATGTGATGGTGCTACCTTTAT TTGTTGTATGTATAGATGTTATATATTATATTTCTAACATGCCCCCTCACGCGAGAGCCCATTTGGGCTTGAAGCGTGGA TAATGCACAGACCCACCTACCATGTGCAGATGTGCTACATTCATTAAACTTTTTAATAATGGGGGCAACATGGGCATAGA GGCTCTGATACCAGGTCAATAGAAAAGTTGCAGCTTAATTTTGAATCATGCAACGTTATCATTTCAATATCATATGATGA GTGATGAGCTTGCATAATTTACAATGTCTTTGTGTCATCTTACACAGACTTTTCTCGTCGTAGGTTTTTTGGACATAGGT GTGTTGGATGTTTTAATGCTTTTATTTACTCTCCAGCTTATGTGTTCTACTTTTAGTCATAGGTAGTGACCACTACTCTT ACCTTATTCTTGTTCATAAATAGGGAGTATCTTGGATGTTGATACACCCCATAGCATTTTATCATTGCTGAAAAGCAAAT CAAAGGGTCATCAAAACCTAAACCCAAGATCTGAAAAGCTATCTGCAACTCTATATGGCCATACAAAAGCTGTCAGTGCT ATACATTGGTCATCAACTCATGGTAATTTTCTTTAACTGTTTCTGGATGTATTGTGTTACATTTAATGTATAAAGCAGGT ATTTATTCAAAGCTAGAATATTTTCGAAATCAAAATATTTAAGTGCTTACACTCCCACAATGGAGAAGAGAGACAGAGCA AGAGATATATGCTTGTTGTATATGTTACTAGTATTGATCTGTTCATTAAAGTTAGCTTGCAGCTCACCTCCTTGCATCTG CTGCGATGGATCATTTGGTTTGCATATGGAATGTATGGAGTAGAGATCAGAAGAAAGCATGTGTGCTAAACTTCCATAAT GCTGCCGTGAAAGATGTCAAATGGTCTCAGCAAGGGCTCTTTCTACTTTCTTGTGGATATGATTGCACATCAAGGTTAGT TGATGTTGAAAAGGGGATAGAAACCCAAGTTTTCAGAGAAGATCAAATCATTGGAGTTATAAAGTTCCACCCCGATAATT CAAGTCTCTTCCTTTCTGGAGGATCAAAGGGCCACATCAAACTATGGGATATTAGAACTGGCAAAGTAGTGCATAACTAT GATCGGAATTTAGGACCGATTCTTGATGTTGAATTTACAACGAATGGGAAGCAATTCATTTCTTCTAGTGATGTATCTGG GAGCAATCTCAGTGAGAATTCTATTATTGTTTGGGATGTGTCACGACAGGTACCATTGTCTAATCAGGTGAGTAAATTCT CTACAATTTTTTATATTTTAATTTGTAGATATCATGAATAATTATGTTTTAGTATTAACTTTACTATTTTGCGTTGACAT GAAGTGTGAATATTTAATATTTTAAGCTACTTTTATATTTATTTTAAACTAAAGCATTATCATGTCAAAACATGAAATTA AAAAAATATTGGAAATTAGTGTGAAAATTGCTTTTCTGAGACTAGGTTTGAGTCTTACATCTCACGCTCATTTTATAATA GATGAACCACCTCAAGCAATGGATGGTGATTGGTTCAAATGGTTTGACTAGTTTGACACTGTTTAAATCAATGATTCTGA GATGCCCTCAGGTTCTATAGGCTTGACCAGACCATCTATAGATCTGTTTGGTGGTTGAACCAGACCAACCAGTCCTATCT GGTTTCGAAACAATGATTCTATCAATGTTGGAGTAAACCCTCATTTTCATCTCCAATGTTTGTAAGGGTCATCAAATCAA TCTCTATACTAAAGGAATACAAAAAATGTCCTTAACCTATTCTTTTGAAGACTGATGTGACAGACAAAAAAAGTTGAGAA CTAGTATGAATGATGAGAGTGTAGTTTGGGGGATAAATTCTATCATGTTAAGTCTTGGGATAAATTTGATGTCCATTACA CATTTTAGGGACGAATCGGGTGATTCACTCATGTTTGCCGAAGAGAGTTGATGAAGAAAGTAGTATGAATAAACCACCAA ATTTGTCCATATCGTACCACTGACTTAAGAGTCGTCCTTAGCCTCAAGAAAGTCATGTTAGTCCCAAATTGACTCATTGC AAAGACTAATGTAATGGATGTTTTTAAATGTTGGGGACTTAAAATAGATTTTCTTTATGTTAGGGGCCAATTCAAAGTTT GTAGGAAATTATGGAATGAATTGGGTTATTTACTCTAGTATTATTCAGTACTTAGTCAATCCCAGATAGTGGTGCACAAC GGCTGACACCAAAAGTGCTAGTGTTATAGCGCATATTAGGATGGTCGCTATGCTGAATTTTTTATGTTGTTTCTGTAATT TATACTATATACAAAAATAGATACTCAAATGATGAAAAATACTCAAAATTCATAGCATTGACAATTAACAATTAAAATTC ATTGGTGTCTTAAGAAAAGATCACCCCTTTAGCGGTCCTGACTCCTGACACCAAACAGCATATCAACCTGGAAGAGCGGC CAAGGGCGATTATGTGCCGTGATGCTAAACCCTGATAAGCCATTCAAAGATTTGCCTCAAATGTTTTTTTCTTTTCTCCG ACATGTATTTGACAACACAACAATTATAATAATAATTGAATCAACATCTAAGGAGGTGTAATGTACTAAACACCTTTGGA AGGAATACTTCAGCAGAAAAGGCACAATGTTCTTACATCTGAAGTTCCTCCTCAAAGTCCATGTTTGTTTCTTTTCTAAT TTATGAAAATAACTGCCTTTTTTAGGTTTAATTTGAGATTATTGGCTTCTTTACCCTCCCTTTTATTGGCACCAAAAATT ACCCACCCACCAGAGCCCTTATTGCAATGCAAGTTAAACTTTCCAGACTCAATTCTTCCCAATCAAGAATCTTGCAGCTC CCATCAGGGTTCTTGGATTTTCCTCTCTGCCTTTAATTCTCTGTTCCAGCTCCTGAACCCTTTCTTCTGAACCCTCCATT CTTGAGAGAACCGTGAATAGCTCCTAGTATCTTCAGAGCTCTAATGCCAACAGCTAACGAAATAAGCTCTGATAACCCGC TTGTTCTTCATAAGATTAAAAATAGAGTGGTTCTGTGTTGTAGTTATTTTTATATCTTTCTCACATAAGCTACTAATTTT GGCTGATGAGAAAAGCACTAAACTTATTGTGAAGTTTCTGTATTTTTATTAACTTGTCATAATTATTTAAAAAGAATTCA TCTAATTAAAAAACACAAACAAACGGACCCCTAATTGGGGTAGCTGCTACACCTTTCTACTCTCAAAACACCCATGAAAC CTTTAGTTTTGCTTGCAACTTAGAAAGTCAAAGTCTCTTACAGTTTTACTACTATCGAGCTGATGCTTCTTATTCATCAC AGTGTTCACTGTTATAGAAGTATTACTCAAGTTACATGTTACAAGCTGTGAAATGCCTATATGTTTATATTGTAGGCACT TACAATTTACAATTTTTACATTGTCATTGCCTACACATCAGATTCAGTTACCATCTGTTTTTTCGAGTCTGGCTCCTCTG AAGTGAGTGACTCACTTTAGATTGTAAAGTAAGTCATAATGACCATTGATGAGTGGCTTTATTGACTTTTCAAAGTAGGT AATCACTATTAATGTTTGTGATGAGTTACTTTACCCTCTAAAATGATCTCTCAATTTAGAGGAGCCAAAACCCTGTTTTT TATCTAAATTTTATTCATGTAAACTTGTTTTCACTCTAGCGACCTATCATTTGGTAAAATATCGGTTTTCTTGATGGTTG TTAGGCAATAATATTAATGCAGTAAATGAATGTTTCAAAGAGGACAATAGTTTGTAAAATACAACATTGTTTTCAGTAAC AAATAATTTTAAAGATCTCATTTTCCTCTTCCAATGACTTATCCCTGAAATAGCTGAGATAAAATTGAAGCCAAATGCAC TGCGGTGCGTTGGCTGGAATATCTTCGATGCTTAAAATCTTCCATTACATTAATTATGTTTGATTATCCCTGAATTTTCC TTTCCTTCTTTCCCTTTATTCTGAGTAATATAGTTTCTTTATATAGAACACATTCGGCTGTAATGCGTCTCTCTCTGAAA GTTTTAGGGATTTCTGATTTATGTACATGGTTTAGATATATGTTATAACATTATTCAGGTCATTTCTGGTGCTACATGCA TTTTGGGAGTGTATCACTTTGGTCCTTTGGTCCTCTGCATCTACAAACTTTGTTATGAGGGCGTGAATTTAGATTTCAAC TGACAACATATTCTGCTTCTGAATCAGGTTTATGTAGAAGCTTATACCTGTCCCTGTGTAAGGTGCCACCCATTTGATCC TGTTTTTGTCGCCCAATCAAATGGGAATTATGTTGCAATCTTTGGTACCACGCCGCCTTACAGACTCAACAAATACAAGA GATATGAGAACCATGGGGTTTCTGGGTTCCCAATTAAGTGTAATTTCAGCAGGGATGGCAAGAAACTTGCATCTGGCTCT TCAGATGGTTCTGTTTACCTTTATGATTATCACTCATCTAAAGTTGTGAAGAAAATCAAGGCCTTTGACCAAGCATGCAT AGACGTTTCGTTTCACCCAGTTATCCCTAATGTTATTGCTTCATGCTCATGGGATGGAGGTATTTTGGTATTTGAGTAGA GTTACCTATTGTCATCCCAATTCCAGGGTAGTGAAGGGTTATGCATTTAGTTACCTGCAAGAAAATGGTTTGGAATCCGA AAGGAAAGGAAAAGAGCTTTCCCTCAGTTTATGTAGGCTGTTTCTGTGTTGTTAGTTGTTACGGATACTTAATGATTATG AAAACATGTGTATTCGTTGCCTAAATGTTTGCTTAACACTTTTTAATTTTAGTTACTATGAGAGAAAATGATTTGTAGGG ATCAGCGTAATGTGTTTGGGTTATCCCTCCTAAGTGGGGCCCAACTTTATTTTTTTCTTTTTTTGGTCACTGGCCCAACT TTATTTTATGAAAAGAAAAAAATGATTTAGTTTTTTGGGCCAAGCCCATGTTTCTTTTTATTTAAAGGGTTAAAACCCTT GATTTTTTGAAGGAGCAGCAACGATTGTCCAAAAAAAAAAGGAGCGTGAATCAGATTCACCTATTTGGCTGCAGCCGTTT TTGAGAAGAATTTTATTTCCTTGACAGATTTTTTGTTACATCATTTGTTTTCCGTTTTGGTAGAAATTTTAGTATGTGCT CTCTGTCTTTGAGCTTTTTATTTTAACCATTTCATTTGGGATTTATCTTCTCTATTTTGTTTGGAT
CDS sequence (LotjaGi3g1v0096800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATACAAAAGCTGTCAGTGCTATACATTGGTCATCAACTCATGCTTGCAGCTCACCTCCTTGCATCTGCTGCGAT GGATCATTTGGTTTGCATATGGAATGTATGGAGTAGAGATCAGAAGAAAGCATGTGTGCTAAACTTCCATAATGCTGCCG TGAAAGATGTCAAATGGTCTCAGCAAGGGCTCTTTCTACTTTCTTGTGGATATGATTGCACATCAAGGTTAGTTGATGTT GAAAAGGGGATAGAAACCCAAGTTTTCAGAGAAGATCAAATCATTGGAGTTATAAAGTTCCACCCCGATAATTCAAGTCT CTTCCTTTCTGGAGGATCAAAGGGCCACATCAAACTATGGGATATTAGAACTGGCAAAGTAGTGCATAACTATGATCGGA ATTTAGGACCGATTCTTGATGTTGAATTTACAACGAATGGGAAGCAATTCATTTCTTCTAGTGATGTATCTGGGAGCAAT CTCAGTGAGAATTCTATTATTGTTTGGGATGTGTCACGACAGGTACCATTGTCTAATCAGGTTTATGTAGAAGCTTATAC CTGTCCCTGTGTAAGGTGCCACCCATTTGATCCTGTTTTTGTCGCCCAATCAAATGGGAATTATGTTGCAATCTTTGGTA CCACGCCGCCTTACAGACTCAACAAATACAAGAGATATGAGAACCATGGGGTTTCTGGGTTCCCAATTAAGTGTAATTTC AGCAGGGATGGCAAGAAACTTGCATCTGGCTCTTCAGATGGTTCTGTTTACCTTTATGATTATCACTCATCTAAAGTTGT GAAGAAAATCAAGGCCTTTGACCAAGCATGCATAGACGTTTCGTTTCACCCAGTTATCCCTAATGTTATTGCTTCATGCT CATGGGATGGAGGTATTTTGGTATTTGAGTAG
Protein sequence (LotjaGi3g1v0096800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIQKLSVLYIGHQLMLAAHLLASAAMDHLVCIWNVWSRDQKKACVLNFHNAAVKDVKWSQQGLFLLSCGYDCTSRLVDV EKGIETQVFREDQIIGVIKFHPDNSSLFLSGGSKGHIKLWDIRTGKVVHNYDRNLGPILDVEFTTNGKQFISSSDVSGSN LSENSIIVWDVSRQVPLSNQVYVEAYTCPCVRCHPFDPVFVAQSNGNYVAIFGTTPPYRLNKYKRYENHGVSGFPIKCNF SRDGKKLASGSSDGSVYLYDYHSSKVVKKIKAFDQACIDVSFHPVIPNVIASCSWDGGILVFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| SMART | 2 | 35 | 34 | 390.0 | ||
| Phobius | 6 | 17 | 12 | - | – | |
| Gene3D | 15 | 303 | 289 | 2.9E-63 | ||
| Phobius | 18 | 25 | 8 | - | – | |
| PANTHER | 18 | 303 | 286 | 2.5E-161 | – | |
| SUPERFAMILY | 20 | 302 | 283 | 1.6E-50 | ||
| ProSiteProfiles | 21 | 303 | 283 | 18.326 | ||
| ProSitePatterns | 22 | 36 | 15 | - | ||
| Phobius | 26 | 303 | 278 | - | – | |
| SMART | 40 | 79 | 40 | 9.7E-4 | ||
| Pfam | 46 | 77 | 32 | 0.027 | ||
| SMART | 82 | 121 | 40 | 0.003 | ||
| ProSiteProfiles | 88 | 130 | 43 | 10.876 | ||
| Pfam | 98 | 121 | 24 | 0.015 | ||
| SMART | 124 | 170 | 47 | 0.83 | ||
| SMART | 221 | 260 | 40 | 0.024 | ||
| Pfam | 227 | 260 | 34 | 0.0049 | ||
| ProSiteProfiles | 240 | 269 | 30 | 9.239 | ||
| SMART | 263 | 303 | 41 | 0.0077 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0096800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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