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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0100100 |
| Transcript ID | LotjaGi3g1v0100100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal rna small subunit methyltransferase; TAIR: AT2G47420.1 Ribosomal RNA adenine dimethylase family protein; Swiss-Prot: sp|O22268|DIM1A_ARATH Ribosomal RNA small subunit methyltransferase; TrEMBL-Plants: tr|A0A1J7H0M5|A0A1J7H0M5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0100100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12447780..12451158) extracted from Lotus japonicus Gifu genome v1.2.
TTGTGAGTGGAAGCTACAACATTTTGAGTCCAAAGTAGTTTATCTTTCGAATGTAAAAAAAATGAGGTATACAATTTAAT TATAATATTTACCTTATATCATTTTAAAGGGAGAAAGAGTCGAAGGGTGACCGGGTACCATATGTTTATACCAAAAAAAG GGAGAAAGAGCTGTGTGAGAGAAGAGTCGACAGAGACCACACAAAAACACATTTTCCTTCTAGAGACCAACACCGCCTCC TCTTCCCCCAAAACCGTTCGTTACCACCGCTTCCTCATCTTTCTCTGAAACACGCGTGCCGCTAGCACTTCTCCTTCTCC GCATCTTTCTTGATTCCGCCACTTGTTATCTCCTTCTCATGAAGATCCAGAGCCGACGAGGTTCCTCTTCAAACGAACAA GCTACATTATAAATGTTTTGGTTTTAAGTTCCATTATTAATTTTAATTTTTCTTTCGGTAAAAAAAATTAATTTTCATTA ATTTCTAAAAATATTAATTTATGTTAAAATTTCAATTTTAAGCATATTTTCCAAAAGCAACAAAAACAAAATCCAATTTA AAAAAAAAACTTTTACTAATAGTTGCATCTATATATAAAGTTAGGGTTTAGCACTTCATACTTCATTGTCGTCGGTGATT CTCTGCCTCCGCCGCCGCCGACGTTCAACCAATCTCGTCGTTCGCGCTCCTTCACTGCGCTGCTCTGCTCTTCATCCCGC CGTCAGCAGCCCAGACCTCCACCACCTCCCACCGGTATATCTTTAGCTTCTCTTGCTCTGCTCAGTTCAGTTCCTTTCCT CCCTTCAACTCCCTATTATTGTGCTCTGTCCAATTTTAGGGTTTTCCATGCATTTAGTATCTTGTTATTTGAAGGTTAAG CAATGCTGAATTTTCATTGGAAACGAAAGTTAGTCAAAATGATGCAGATTTTTCATGAACTTCATTTGTTGTTTTGTTAA TGAAGGACATGACTGTGGAAGTAGAAATAAAAATTGATTCAATTGCATTAATTTTCACATACATCCAAGTGTGCAATTCA ATTAGTTTTTAATATTTATTCAGAATTCAGAATATTAAGAATCCATTGCACAAAGCAACTGAGTACTAGGAATTAAATTG AATTTCATGTGGATTTAATTTCAAACAGGGAACCTATCTGTGTTTCTGAGAGAGAGTTAGACTTGAATCGACAATGGCGG GAGGCAAGATGAAGAAGGAAAAGGGCAAGTCCCAACAGAGCACTCCTTACCAAGGCGGAATATCGTTTCACAAATCGAAG GGTCAGCATATACTCAAGAACCCCTTGCTTGTGGATGCTATAGTGCAGAAATCTGGTATCAAAAGCACTGATGTGATCCT TGAGATTGGTCCCGGTACTGGAAACTTGACGAAGAAGCTTTTGGAAGCGGGGAAGAAGGTTATTGCTGTTGAGATTGACC CTCGTATGGTTCTTGAGCTGCAGAGACGATTCCAGGGGACACCTTACTCCAGCCGCCTCACGGTATGCGTTTGTCCATTT TGTTTGTTTTCTGTTTTAGCAGATTGGATGTTGGTGAGAAATATTGAATAGAAAAAGTGCCAAACCATCTATATTGTATT CATGTAAATAGTAATTTGAAATTATTATTATGCTTGTTTGATTCTGGTTGAATGGTATGGATTTAAAAACCTTTGTGATT GAAAATGAGTTAAGTCATTGGAAACAGCGAGTTTTCTGTGTGCTGCAAGCTCTTGGGATACAGGTTAATGACTACTGTAC TGTGTAGAATCAACTGCTTGGGTTGTTGTCTCCTTAACCAAAAGTCCAGACTTTGGGTTTAATGCATTGTGCTTTAATGC TTGAAACAGTACTTGAATTAGACATTATGGTGTCAAATTCTGGAGCTACGGGCTTCAATAGGACAGTCATTATTTAGTGT TTGTTACTTTTTCTTTGACTGGATGTTGTCAAAGTAGTTGGTGTCTAGTTGAAGATTCATATCCAGATTGGTTAAATGTT TGAAATTTTTGTATGTTTTCTATCTCAATGCACTTTCTGTCGTGATCTGTTTAAGGAAAAAGAATTAACTTTAAGTTTGT TTCTTTTTAATGTGATTTGTAAATAATTGGCTATTTGGAAAAATAGTGTTGTCAAAGTATGCATAAAGTTAGGTATGACG TGAGGCACTTGTATTATGTTGTAAATATTCAATGTTGCTTTGAGTCAAGTGACTTTGACATTTTGTAACCTATAGCTTGT TTCTTTGCCCACAACTTCCTCAGAGCAAAAGATAATTTTCCTTTTCCTTTGTTGTTTCAACTTAATTTCAATATAACTTT CTTTTATTGTTACAGGTTATTCAAGGTGATGTCCTGAGGACTGAACTTCCTTATTTTGACATATGCGTGGCGAATATTCC TTATCAAATATCTTCCCCTCTCACATTCAAGTTACTAAGCCACCAGCCTGCATTTAGGTGTTCCATCATTATGTTCCAGA GAGAATTTGCAATGAGATTGGTAGCTCAGCCAGGTGATAAACTCTATTGTCGACTTACTGTGAACACACAACTCCATGCT CGAATCTTCCACCTCCTCAAAGTTGGAAGAAACAACTTTAGGCCTCCACCTAAGGTTGATTCCTCTGTAGTACGAATCGA GCCTAGAAAGCCCCGCATTGAAGTTAAGCAGAAGGAATGGGATGGGTTTCTGCGGATATGTTTCAACCGAAAGAACAAGA CTCTTGGCTCGATATTCAGGCAAAAGAATGTGATCTCTTTGCTCGAGAAAAATTACAAGACTGTGCAGGCACTGAAACTC TCACAAGAAGGTCCACTTGAGGAAACAGACACTAAAGTAGACTTCTCTAGTTTTGGTGATGATCAAGGTATGGATGTGGA TGACGATGGAATGGATGATGATGAAATGGAAGTTGAGGATGGGGGCATAGATGAAGTGCAATCTGAATTCAAAGACAAGG TTTTGAGTGTTTTGAAAGAGGGAGATTTTGAAGAGAAGAGGTCATCCAAACTCTCACTTCAGGAGTTCCTCTACCTGCTT TCTCTATTTAACAAAGCTGGCATACACTTCTCCTGATTTTCGATTTTATCATTTTCTTAGTATTTGTTTTCACTGTTTAA ATCGATTATAATATTTTGAATGAGTTCAGATGTTATCAGATAATAACTATTTAGTATTTAGGCGTTGTATTTTGTTGAGC TCCTACATAGATTTACAACTATAATTTTGTCAAGTCAGATTAAATGTTATTCTTTTAATGCTATATGAGGATCTGCATTT TGATTGAACAAAGTTGTTCCCTTTTGTTACATGCTATTATTTTGGTGATTTGAGGCAAAAGGTGTTTGATAAGGTCATCA AATTGAAGATCATTTTGAG
CDS sequence (LotjaGi3g1v0100100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGAGGCAAGATGAAGAAGGAAAAGGGCAAGTCCCAACAGAGCACTCCTTACCAAGGCGGAATATCGTTTCACAA ATCGAAGGGTCAGCATATACTCAAGAACCCCTTGCTTGTGGATGCTATAGTGCAGAAATCTGGTATCAAAAGCACTGATG TGATCCTTGAGATTGGTCCCGGTACTGGAAACTTGACGAAGAAGCTTTTGGAAGCGGGGAAGAAGGTTATTGCTGTTGAG ATTGACCCTCGTATGGTTCTTGAGCTGCAGAGACGATTCCAGGGGACACCTTACTCCAGCCGCCTCACGGTTATTCAAGG TGATGTCCTGAGGACTGAACTTCCTTATTTTGACATATGCGTGGCGAATATTCCTTATCAAATATCTTCCCCTCTCACAT TCAAGTTACTAAGCCACCAGCCTGCATTTAGGTGTTCCATCATTATGTTCCAGAGAGAATTTGCAATGAGATTGGTAGCT CAGCCAGGTGATAAACTCTATTGTCGACTTACTGTGAACACACAACTCCATGCTCGAATCTTCCACCTCCTCAAAGTTGG AAGAAACAACTTTAGGCCTCCACCTAAGGTTGATTCCTCTGTAGTACGAATCGAGCCTAGAAAGCCCCGCATTGAAGTTA AGCAGAAGGAATGGGATGGGTTTCTGCGGATATGTTTCAACCGAAAGAACAAGACTCTTGGCTCGATATTCAGGCAAAAG AATGTGATCTCTTTGCTCGAGAAAAATTACAAGACTGTGCAGGCACTGAAACTCTCACAAGAAGGTCCACTTGAGGAAAC AGACACTAAAGTAGACTTCTCTAGTTTTGGTGATGATCAAGGTATGGATGTGGATGACGATGGAATGGATGATGATGAAA TGGAAGTTGAGGATGGGGGCATAGATGAAGTGCAATCTGAATTCAAAGACAAGGTTTTGAGTGTTTTGAAAGAGGGAGAT TTTGAAGAGAAGAGGTCATCCAAACTCTCACTTCAGGAGTTCCTCTACCTGCTTTCTCTATTTAACAAAGCTGGCATACA CTTCTCCTGA
Protein sequence (LotjaGi3g1v0100100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGGKMKKEKGKSQQSTPYQGGISFHKSKGQHILKNPLLVDAIVQKSGIKSTDVILEIGPGTGNLTKKLLEAGKKVIAVE IDPRMVLELQRRFQGTPYSSRLTVIQGDVLRTELPYFDICVANIPYQISSPLTFKLLSHQPAFRCSIIMFQREFAMRLVA QPGDKLYCRLTVNTQLHARIFHLLKVGRNNFRPPPKVDSSVVRIEPRKPRIEVKQKEWDGFLRICFNRKNKTLGSIFRQK NVISLLEKNYKTVQALKLSQEGPLEETDTKVDFSSFGDDQGMDVDDDGMDDDEMEVEDGGIDEVQSEFKDKVLSVLKEGD FEEKRSSKLSLQEFLYLLSLFNKAGIHFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| SUPERFAMILY | 20 | 252 | 233 | 7.72E-66 | ||
| PANTHER | 22 | 343 | 322 | 2.2E-132 | ||
| PANTHER | 22 | 343 | 322 | 2.2E-132 | – | |
| TIGRFAM | 24 | 338 | 315 | 5.3E-75 | ||
| Pfam | 24 | 251 | 228 | 1.6E-62 | ||
| Gene3D | 25 | 209 | 185 | 4.4E-67 | – | |
| ProSiteProfiles | 25 | 274 | 250 | 65.205 | ||
| SMART | 39 | 208 | 170 | 2.3E-86 | ||
| CDD | 55 | 138 | 84 | 1.3492E-9 | – | |
| ProSitePatterns | 55 | 82 | 28 | - | ||
| Gene3D | 211 | 287 | 77 | 5.2E-17 | – | |
| Gene3D | 292 | 349 | 58 | 1.4E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | RRNA modification | The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | RRNA (adenine-N6,N6-)-dimethyltransferase activity | Catalysis of the dimethylation two adjacent A residues in the loop closing the 3'-terminal stem of the 18S rRNA, using S-adenosyl-L-methionine as a methyl donor. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Molecular function | RRNA methyltransferase activity | Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule. |
Expression pattern of LotjaGi3g1v0100100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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