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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0103200 |
| Transcript ID | LotjaGi3g1v0103200.8 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC transporter C family protein; TAIR: AT2G34660.3 multidrug resistance-associated protein 2; Swiss-Prot: sp|Q42093|AB2C_ARATH ABC transporter C family member 2; TrEMBL-Plants: tr|V7BS39|V7BS39_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0103200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12779988..12783398) extracted from Lotus japonicus Gifu genome v1.2.
CAGAGCACAGCTCGAGAGGTGAAGCGCTTGGATTCCATTACAAGATCTCCTGTTTATGCGCATTTTGGGGAATCATTGAA TGGTTTGTCAAGCATTCGCGCTTACAAAGCATATGATAGGATGGCACAGATCAATGGAAAATTCATGGATAACAACATAA GATTCACTCTTGTCAACATTAGTTCGAACCGGTGGTTGACCATAAGGTTAGAATCATTAGGAGGCCTCATGATTTGGTTG ATAGCAACATTCGCTGTCCTGCAAAATGGAAGAGCTGAAAACAAGGCAATGATTGCGTCTTCAATGGGCCTACTTCTCAG TTACACTTTGAACATAACAAATCTCTTGAGCGGTGCCCTCAGACAAGCAAGCAGAGCTGAGAACAGTCTAAATGCGGTTG AGCGCGTTGACACCTATATAAATTTAGAATCCGAGGCTCCAGGTATAGTTGAGGAAAACCGTCCACCACCAGGATGGCCG ACAACTGGATCGATTGAGTTTGAGAATGTTGTTCTCACATACAGGCCTGAACTTCCTCCAGTTCTGCATGGAGTGTCTTT CACAGTATGTCCAACTGAGAAGATAGGGGTAGTTGGAAGAACTGGTGCAGGAAAGTCTAGCATGCTTAATGCGTTATTCC GGATTGTGGAACTACAAAGAGGAAGAATCACTATTGATGGTTGTGATGTTTCGACAATTGGACTAGCAGATCTGCGAAAA GTTCTCACCATCATACCGCAATCGCCAGTTCTGTTCTCTGGTATGCACTATATAACCTGAAATATTGTTCTGTCATATCT AGATAATCAAGCATGAGTTTAGTTTTAATCCACTTTCAGCAAGGCTTTTAATCAAGTCGCATTACAGGCCAATCCAGACA AAAAATGTTGTAGACTTGTAGTACCTAGATGTCTACGATACATCAAGTGACACTAACTGAGATTTAAAATTTAACTGTCT ATGTATAATTTTTACACTATCATCTAATCACACATTAGCACATTATTATAAAACAAGTTTCAAGCAGTTATTTTTGTATT CAAACTCTCTTAGTAATGAAGCAATAATTGAGATGATGATAGTGTAAAATATGACATTAAAGATCAAGGTTAAATCCTAG AAAACTTATGTTCTAGCTCACTAATAATCCTGGTTATTAGTCCTATTCTTGGCCAAAATAGAATACAAGAATTATGGCAT TTTTTATTGTAGTGTTTTAGGTTTTCACTTAAGTTGTGGATAAGCGTTTTCCAATAACTGGCAACTGCACTATACCTTTT CCGTTCTGAAAATCGTTAATCTTTCTCTTAGGAACTGTTCGCTTCAATCTTGATCCATTTAATGAACACAATGATGCTGA CCTATGGGAATCTTTAGAAAGGGCGCATTTGAAGGATGTAATTAGAAGAAATCCACTTGGCCTAGATGCTCAGGTATTAT GGTATAATTTTAGTCATTGAAGTTTCCCATATATACAAGAAGTATAAGTAGATATATAATATTTGAACATGTTTTGCATA TATAGGAGTCATCATAACTTTATGAAGTGAATTTTATTCAAACAGTCTAGTTTTCTGAACAATAGTTGGAAATATATGAT ATGTTTTGTGTAAATTGGTTTTTCTTGGAGTGTTTTTGAGTTCTCAATTGAAAAGATGAAATTGACAATGTAGTCTCTTC TACACTTAATTAAGGTTTCAGAGGGAGGAGACAATTTCAGTGTTGGACAGAGGCAACTCATAAGTCTAGCAAGAGCATTG CTACGAAGATCAAAGGTTCTTGTCCTGGATGAAGCTACTGCTGCTGTAGATGTTAGAACAGATGCCCTTATCCAGAAAAC TATCCGACAAGAATTCCAGTCTTGCACCATGCTCATCATTGCACACAGATTAAATACAATTATTGACTGCGATCGGATTC TGTTGCTTGATGCTGGCCGGGTAAATTCAATTAGCATAATTTACAGATGTTTAATTTCTACATGCTGTAATTATCATTGT TCTATCTGACCATGAAGGAGATCTAGAAATCAATTGGTTAAAATATGTTTCTGACTGTATATGACACTTATAACTGGTTC TCATACAAAAAGAGTTTTCAATGTAGTGCCTATATGTACAACCCCCATCTTTGGTATTGTCCCAGCCGTCTATGGCTGTT ATACCACTACGAGATTGGCATTGAACTACCAAGAAATACAGGGACCAAATTGAAAATGATTGTTACATGTAAGGACCAAG ATATTTCTAGTCCCAACACCTGATACTGATCTTCAATTTTCTCCCTTTGCACTCTTCTAGGATGGTATATAATTTCTCAA TATGGAAATATGGATCGTGTTTAAAACAGTTTTTCTTACAATTTGGATTAGGCCTAACTCTACCTCAAAAGCTAGTTTAG GAGTGAGGATTGTTCTACCCTTTATAAGAACTAGCCATATCTCTAGTCAATGTGAGACTTTTCATCACGCCTCTCACACC CAAGGCTAGACATGGAATGAACATTTGCGGTGGCCCATATATGAGAGGTCTCCAATAAGTTGATGTAGGATAGACACTGA TATCATCTTAAAATTTGGGTTAGATATGACTCTATCCCAAAAGCTAGCTTAGGAGTGAGGTTTGCTCTACCTTTATAAGG ATTATTTTGATCATATCTCTAGTCAATGTGAGACTTCTAAACAATTTTACATGCCATAAAGATTTGACAAAGTTTTTTAC TTTGACTTTATCTTTTCTGAGTTTGGTACTGGCTATGTTTAATTCCTAAAAACTTAGTTATAATTATGCATATAGGACTA AATTGAAAACTTTTTCACACAAGGACCAAATTAAGAATTAGTGTCATGAAAAAGGACTCAAAGTACATCACCAAATGAGT TTAAGCATTCTACATGGAGTGGATTCTTTTTTCCCAATCAAATTAGTCAACATTTGATAATCCAATATTAAGATTCGTCT TTCGTATACTTTCCAGGTTCTTGAATATGGTTCACCAGAGGAGCTCTTAAAAAATGAAGAAAGTGCATTCAATAAGATGG TTCAAAGCACTGGACCTGCAAATGCTGAGTATTTATGTAGCCTAGTGTTTGGAAGGACAAAGAACAATTCTGGTGAATAT AACAAGGGGCAAGAAAGCCACACGAGACAGTTAGCTTTTACCCATTGGGCTGCTGCTACCAAGTTTGCCATAGCTTCTAC CCTTTCTTCTGTACACAATAACCTTCAAAAGCCTAGTTCTAAGGAGAATAAAGATTTCCTTGATGAAACAAAGGATGCAG TGACAACACTTCAGGAAGTTCTAGAGGGGAAGCATGATGAAGCCATAGAAGAGACACTGACTAAATTCCATGTTCCAACA TATAGATGGTGGTCCACCCTCCATCAAGTTATTGAAGGTAAACATACATAA
CDS sequence (LotjaGi3g1v0103200.8) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACAGATCAATGGAAAATTCATGGATAACAACATAAGATTCACTCTTGTCAACATTAGTTCGAACCGGTGGTTGAC CATAAGGTTAGAATCATTAGGAGGCCTCATGATTTGGTTGATAGCAACATTCGCTGTCCTGCAAAATGGAAGAGCTGAAA ACAAGGCAATGATTGCGTCTTCAATGGGCCTACTTCTCAGTTACACTTTGAACATAACAAATCTCTTGAGCGGTGCCCTC AGACAAGCAAGCAGAGCTGAGAACAGTCTAAATGCGGTTGAGCGCGTTGACACCTATATAAATTTAGAATCCGAGGCTCC AGGTATAGTTGAGGAAAACCGTCCACCACCAGGATGGCCGACAACTGGATCGATTGAGTTTGAGAATGTTGTTCTCACAT ACAGGCCTGAACTTCCTCCAGTTCTGCATGGAGTGTCTTTCACAGTATGTCCAACTGAGAAGATAGGGGTAGTTGGAAGA ACTGGTGCAGGAAAGTCTAGCATGCTTAATGCGTTATTCCGGATTGTGGAACTACAAAGAGGAAGAATCACTATTGATGG TTGTGATGTTTCGACAATTGGACTAGCAGATCTGCGAAAAGTTCTCACCATCATACCGCAATCGCCAGTTCTGTTCTCTG GAACTGTTCGCTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACCTATGGGAATCTTTAGAAAGGGCGCATTTG AAGGATGTAATTAGAAGAAATCCACTTGGCCTAGATGCTCAGGTTTCAGAGGGAGGAGACAATTTCAGTGTTGGACAGAG GCAACTCATAAGTCTAGCAAGAGCATTGCTACGAAGATCAAAGGTTCTTGTCCTGGATGAAGCTACTGCTGCTGTAGATG TTAGAACAGATGCCCTTATCCAGAAAACTATCCGACAAGAATTCCAGTCTTGCACCATGCTCATCATTGCACACAGATTA AATACAATTATTGACTGCGATCGGATTCTGTTGCTTGATGCTGGCCGGGTTCTTGAATATGGTTCACCAGAGGAGCTCTT AAAAAATGAAGAAAGTGCATTCAATAAGATGGTTCAAAGCACTGGACCTGCAAATGCTGAGTATTTATGTAGCCTAGTGT TTGGAAGGACAAAGAACAATTCTGGTGAATATAACAAGGGGCAAGAAAGCCACACGAGACAGTTAGCTTTTACCCATTGG GCTGCTGCTACCAAGTTTGCCATAGCTTCTACCCTTTCTTCTGTACACAATAACCTTCAAAAGCCTAGTTCTAAGGAGAA TAAAGATTTCCTTGATGAAACAAAGGATGCAGTGACAACACTTCAGGAAGTTCTAGAGGGGAAGCATGATGAAGCCATAG AAGAGACACTGACTAAATTCCATGTTCCAACATATAGATGGTGGTCCACCCTCCATCAAGTTATTGAAGGTAAACATACA TAA
Protein sequence (LotjaGi3g1v0103200.8) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQINGKFMDNNIRFTLVNISSNRWLTIRLESLGGLMIWLIATFAVLQNGRAENKAMIASSMGLLLSYTLNITNLLSGAL RQASRAENSLNAVERVDTYINLESEAPGIVEENRPPPGWPTTGSIEFENVVLTYRPELPPVLHGVSFTVCPTEKIGVVGR TGAGKSSMLNALFRIVELQRGRITIDGCDVSTIGLADLRKVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWESLERAHL KDVIRRNPLGLDAQVSEGGDNFSVGQRQLISLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRL NTIIDCDRILLLDAGRVLEYGSPEELLKNEESAFNKMVQSTGPANAEYLCSLVFGRTKNNSGEYNKGQESHTRQLAFTHW AAATKFAIASTLSSVHNNLQKPSSKENKDFLDETKDAVTTLQEVLEGKHDEAIEETLTKFHVPTYRWWSTLHQVIEGKHT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 398 | 398 | 5.7E-198 | – | |
| PANTHER | 1 | 398 | 398 | 5.7E-198 | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| SUPERFAMILY | 5 | 105 | 101 | 3.14E-7 | ||
| CDD | 5 | 99 | 95 | 7.4256E-22 | – | |
| TMHMM | 25 | 47 | 23 | - | – | |
| Phobius | 26 | 47 | 22 | - | – | |
| Phobius | 48 | 58 | 11 | - | – | |
| Phobius | 59 | 80 | 22 | - | – | |
| Phobius | 81 | 480 | 400 | - | – | |
| Gene3D | 109 | 361 | 253 | 7.6E-91 | – | |
| SUPERFAMILY | 115 | 357 | 243 | 2.24E-75 | ||
| CDD | 123 | 343 | 221 | 6.92071E-139 | – | |
| ProSiteProfiles | 125 | 359 | 235 | 18.441 | ||
| Pfam | 142 | 290 | 149 | 4.9E-28 | ||
| SMART | 151 | 344 | 194 | 1.2E-11 | ||
| ProSitePatterns | 262 | 276 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. |
Expression pattern of LotjaGi3g1v0103200.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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