Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0109900 |
| Transcript ID | LotjaGi3g1v0109900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G62930.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic; TrEMBL-Plants: tr|A0A0R0IGR1|A0A0R0IGR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0109900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13573573..13577032) extracted from Lotus japonicus Gifu genome v1.2.
TATTAGTGTTTTTTTAACAAAATTTGTTATCATATATAGCATTTACACAGAAAACTTACATGACACCCCTAGTTTAAGGT TGAGTTTGATTGGTAGACATGTTGAATGCAGCAATGTCACGGTCAAGATTAAGGTATGCTGTCTCTGTTTCCATTCTCAA GCTTCCTCCTTTTCTATACACTCGCTCTCACTCTCACTCTCAGTCTCTTCGCCCATCCATTCACGATGCTGATGATAACA CCGTTTCCTTGTTCAATCGCATGCTGTATATGCATCCTACCCCACCCATCTTTGAATTTGGCAAGATTTTAACCTCCCTT GTCAAGATGAAGCGTTACACCACTGCCGTTTCCCTTTTTCACAAAATGGAAACCAGGGGAATTAATCCAGACTTTATTGC TATGAACATCTTGATCAATTGTTTCTGCAACATGGGTCATATCCATTTCGCCTTTTCTGTATTGGGCAAGCTTTTTAAGA GGGGTTACCAGCCAAATACCATAACCTTGAATGCACTCATGAAAGGTCTATGTCTTAGTGGTCAGGTCAATAAAGCTTTG CAATTTCATGACCATGTGGTAGCACATGGATTTCTGCTCAACCAAGTTAGTTATGGGACCTTGATCAATGGATTGTGTAA AATGGGAGAAACAGGTGCTGCCTTGCAGTTGCTGAGGAAGATCCAGGGGCTAATGGTTAAGCCTACTGTGGTAATGTATA ATTCTATCATTGACTGCTTGTGCAAAGATAAACTTGTAACCGATGCCTATGATCTATATTCTGAAATGGTTGTCAAGGGA ATTTTGCCTGATGTTCTCACTTACAATTCTCTATTGTATGGCTTTTGCATTCTGGGTCAGTTGAAAGAAGCAGTTGATTT GTTAAATGAAATGTTTCAGAAAAGCATCAACCCAAATAATTATACTTTTAATATATTAATTGATGCTTTAGGTAAGGAAG GGAAGATGAAAGAAGCTAAAAATGTGTTAGCTATGATGATAAAAGAAGGCGTGGAACCGAATGTGGTTACTTATAGCTCT TTAATGGATGGTTATTGCTTAGTTAATGAAATGAACAAAGCAAAGTATGTATTCAACACTATGACCCAAATAGGATTGAG TCATGATGTCCGCAGCTATAGTATCATGATTAATGGTTTATGTAAGACTAAAAAGGTGGATGAAGCTGTGGATCTCTTTG AAGAAATGTATTCCAAAAATATCATTCCTAATACGGTAACATACAATTGCCTTATTGATGGTTTGTGCAAGTCAGGAAGA ATGTCTGATGTTTGGAAGCTTATTGATAGGATGCATGATAAAGGTATACAAGCTGATATAGTCACTTACAATTGCATAGT AGACGCTTTATGCAAAAGCAATCATCTTGACAAGGCACTTGCATTATGTAGAAAAATTCAAGGCCAGGGTATTCAGCCTA ATGAGTTCACGTACACTATACTTATTGATGGACTATGCAAAGGTGGAAGAGTTAAGGACGCACAGGATATTTTTCAGGAA CTTTTGATTAAAGGCTACAATCTAAATGTCCAAACATATACTGTTATGATCAATGGGCTTTGTAAAGAGGGCTTACTTGA TGAAGCATTGGCCTTGCGATTCAAAATGGAAGACAATGGTTGCGTCCCTAATGCTGTCACTTTTGAAATAATTATCCGGG CTCTCTTTGAAAAAGGCGAGAATGATAGGGCAAAGAAACTTCTTCATGAAATGGTTGCTAGAGGCCTGCTACTAAAATAA AACAAGGTATGGTGCTTTCTAGTTACATATTATATTTTGAATTTTGACGACAACCATCCACTCATGTTTATGGTTATGCA TAAAAAAGATAGTATATGTCATGTGCTTACTCTCACTCTAGATTTGGTTAAAATTCTGTCATTGGGTTCATTTTTATGTT CTAATCATAACAATGGTTGATTATTGCATCTTGACATAACTTTCCTTTTTCTTTGAAGTACAATGACGAACACCTCCTCT ACTTTAAAATATTTATTCAATCTGTGGTCATTGTTGAATATGGCACAAATTATTTGCAATATAACTTTCATCATTGTCCT CTATTTTTTCATCGGATTTCCTCATTTGTCTGTCGTCTGAAGCCTTCCCTTTCCCGAATACCACATAACTTTTGACTCCT GTTTCATCCACTGCTTTCTGATTTAATCCTATACCCTTCTGCTCAACTTTGCCGAATATCATATGCCCACAAATTCTAAC TGTCAATGTTCGTGGTTTTCGGCTATAGCCAATTTAGTTGGAAGATTAACTAACAAGATAACAGCAACATAACCGTTCTG TAACAGAATCAACTAACTCCTAACACACTAATGTAAAGACTTCATTAGTGTGAACCCGAGCTATATAATATCTCTATATA ACAGTTCTGGATAGCCCTCCTCTATGTTTTGTCTTTTTCTTAAGTCCATAATCTAATATGATTTTTACCATCATGTGAGC TGTCCTGGCTGTTACATTCTCCTCTTTTGACTTATGTGTTGTGAGGAAGTCACTCATCTTTTGTCTTTGGGCTCAGTTGG TGTCTCTTCCTCGTACTGTAAACATAGGCTAACAGCATATCAACTGTTATGGGAGAAGTTCTCTTGAGATTTCATGTTTT ACAAGTAGTACATTCTAACTACTTATGCAACTAATCTAACTGTTGAACAAGCAACACAATATATGAGTAATCTTGGTATT ACTCTTATAGATGAATATGAGGCAAGGTACAAAAATATATCGTTTGAATTTTTTGAAAACCAAGAGGCTTGAATTTTTTG ACAACTTTGCTTTTCATTTCCATGACCCCCGTCTGAGGAACACATTAGACAGTAGAATTTAATTTAACTTTGTTATTAGT TTTAAATGGTTTAGAATTTTATGTTGCTACAATGAAGAAACCAAAATTTCCCTTTTGTGGGGATAAAAGGATAGATAATA AGCTCTCATGTCCTCTTCTGTTTTTACTTTTTCAGGGGGAGGTGAGATTGAGGGACTTTAAATGTTATGAAAATTTATTG AGATATCCATTGCAGTTCTCCTCTTTCATGTTTTCATTTTGATAATAGTATTGTTAATAAGGTCATGGATTCAGCAAAAT CTGCACAAAAGTTACAGCATATTGTGTTGTAAAATAAACCAAGATGTTGTTCAGGACTATGATGTTGATTCATGAAATAA TTGGGTTTTATTATTATTTTTTTCATGTAGGTTGTAAGATCTGGAGATTTGATTTCTAACTGTGCTGAAGAAGGGGTAAG GCTATGAGATGGTTGTCCAGAAAATTATAAGTGTGTGGTAGTATGGAGAGATCAGGCTCTCGAATTCCTGCTGTATTGTA CTATTTCCAGTAGAGATTCTTCATCTTTGCAGTATCAATAATAACTATCCATTTCTCTATCTCTTTATCTTATCATTACT CTACAGTCTACTAATGCATA
CDS sequence (LotjaGi3g1v0109900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAATGCAGCAATGTCACGGTCAAGATTAAGGTATGCTGTCTCTGTTTCCATTCTCAAGCTTCCTCCTTTTCTATA CACTCGCTCTCACTCTCACTCTCAGTCTCTTCGCCCATCCATTCACGATGCTGATGATAACACCGTTTCCTTGTTCAATC GCATGCTGTATATGCATCCTACCCCACCCATCTTTGAATTTGGCAAGATTTTAACCTCCCTTGTCAAGATGAAGCGTTAC ACCACTGCCGTTTCCCTTTTTCACAAAATGGAAACCAGGGGAATTAATCCAGACTTTATTGCTATGAACATCTTGATCAA TTGTTTCTGCAACATGGGTCATATCCATTTCGCCTTTTCTGTATTGGGCAAGCTTTTTAAGAGGGGTTACCAGCCAAATA CCATAACCTTGAATGCACTCATGAAAGGTCTATGTCTTAGTGGTCAGGTCAATAAAGCTTTGCAATTTCATGACCATGTG GTAGCACATGGATTTCTGCTCAACCAAGTTAGTTATGGGACCTTGATCAATGGATTGTGTAAAATGGGAGAAACAGGTGC TGCCTTGCAGTTGCTGAGGAAGATCCAGGGGCTAATGGTTAAGCCTACTGTGGTAATGTATAATTCTATCATTGACTGCT TGTGCAAAGATAAACTTGTAACCGATGCCTATGATCTATATTCTGAAATGGTTGTCAAGGGAATTTTGCCTGATGTTCTC ACTTACAATTCTCTATTGTATGGCTTTTGCATTCTGGGTCAGTTGAAAGAAGCAGTTGATTTGTTAAATGAAATGTTTCA GAAAAGCATCAACCCAAATAATTATACTTTTAATATATTAATTGATGCTTTAGGTAAGGAAGGGAAGATGAAAGAAGCTA AAAATGTGTTAGCTATGATGATAAAAGAAGGCGTGGAACCGAATGTGGTTACTTATAGCTCTTTAATGGATGGTTATTGC TTAGTTAATGAAATGAACAAAGCAAAGTATGTATTCAACACTATGACCCAAATAGGATTGAGTCATGATGTCCGCAGCTA TAGTATCATGATTAATGGTTTATGTAAGACTAAAAAGGTGGATGAAGCTGTGGATCTCTTTGAAGAAATGTATTCCAAAA ATATCATTCCTAATACGGTAACATACAATTGCCTTATTGATGGTTTGTGCAAGTCAGGAAGAATGTCTGATGTTTGGAAG CTTATTGATAGGATGCATGATAAAGGTATACAAGCTGATATAGTCACTTACAATTGCATAGTAGACGCTTTATGCAAAAG CAATCATCTTGACAAGGCACTTGCATTATGTAGAAAAATTCAAGGCCAGGGTATTCAGCCTAATGAGTTCACGTACACTA TACTTATTGATGGACTATGCAAAGGTGGAAGAGTTAAGGACGCACAGGATATTTTTCAGGAACTTTTGATTAAAGGCTAC AATCTAAATGTCCAAACATATACTGTTATGATCAATGGGCTTTGTAAAGAGGGCTTACTTGATGAAGCATTGGCCTTGCG ATTCAAAATGGAAGACAATGGTTGCGTCCCTAATGCTGTCACTTTTGAAATAATTATCCGGGCTCTCTTTGAAAAAGGCG AGAATGATAGGGCAAAGAAACTTCTTCATGAAATGGTTGCTAGAGGCCTGCTACTAAAATAA
Protein sequence (LotjaGi3g1v0109900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNAAMSRSRLRYAVSVSILKLPPFLYTRSHSHSQSLRPSIHDADDNTVSLFNRMLYMHPTPPIFEFGKILTSLVKMKRY TTAVSLFHKMETRGINPDFIAMNILINCFCNMGHIHFAFSVLGKLFKRGYQPNTITLNALMKGLCLSGQVNKALQFHDHV VAHGFLLNQVSYGTLINGLCKMGETGAALQLLRKIQGLMVKPTVVMYNSIIDCLCKDKLVTDAYDLYSEMVVKGILPDVL TYNSLLYGFCILGQLKEAVDLLNEMFQKSINPNNYTFNILIDALGKEGKMKEAKNVLAMMIKEGVEPNVVTYSSLMDGYC LVNEMNKAKYVFNTMTQIGLSHDVRSYSIMINGLCKTKKVDEAVDLFEEMYSKNIIPNTVTYNCLIDGLCKSGRMSDVWK LIDRMHDKGIQADIVTYNCIVDALCKSNHLDKALALCRKIQGQGIQPNEFTYTILIDGLCKGGRVKDAQDIFQELLIKGY NLNVQTYTVMINGLCKEGLLDEALALRFKMEDNGCVPNAVTFEIIIRALFEKGENDRAKKLLHEMVARGLLLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 45 | 196 | 152 | 4.7E-33 | ||
| PANTHER | 49 | 238 | 190 | 1.7E-180 | – | |
| PANTHER | 49 | 238 | 190 | 1.7E-180 | – | |
| ProSiteProfiles | 63 | 97 | 35 | 8.67 | ||
| TIGRFAM | 70 | 98 | 29 | 7.1E-5 | ||
| Pfam | 71 | 95 | 25 | 0.23 | ||
| SUPERFAMILY | 73 | 372 | 300 | 5.31E-6 | ||
| Pfam | 97 | 145 | 49 | 2.7E-10 | ||
| ProSiteProfiles | 98 | 132 | 35 | 9.975 | ||
| TMHMM | 99 | 121 | 23 | - | – | |
| TIGRFAM | 103 | 134 | 32 | 8.3E-5 | ||
| ProSiteProfiles | 133 | 167 | 35 | 9.942 | ||
| TIGRFAM | 135 | 168 | 34 | 3.5E-4 | ||
| PANTHER | 142 | 339 | 198 | 1.7E-180 | – | |
| PANTHER | 142 | 339 | 198 | 1.7E-180 | – | |
| Pfam | 164 | 194 | 31 | 1.5E-7 | ||
| ProSiteProfiles | 168 | 202 | 35 | 10.227 | ||
| TIGRFAM | 170 | 196 | 27 | 7.8E-5 | ||
| Gene3D | 197 | 267 | 71 | 3.0E-21 | ||
| Pfam | 199 | 231 | 33 | 6.3E-9 | ||
| ProSiteProfiles | 203 | 237 | 35 | 11.751 | ||
| TIGRFAM | 205 | 239 | 35 | 1.4E-9 | ||
| PANTHER | 222 | 448 | 227 | 1.7E-180 | – | |
| PANTHER | 222 | 448 | 227 | 1.7E-180 | – | |
| Pfam | 237 | 285 | 49 | 1.1E-16 | ||
| ProSiteProfiles | 238 | 272 | 35 | 12.233 | ||
| TIGRFAM | 241 | 273 | 33 | 5.4E-7 | ||
| Gene3D | 268 | 338 | 71 | 1.2E-21 | ||
| ProSiteProfiles | 273 | 307 | 35 | 12.671 | ||
| TIGRFAM | 275 | 309 | 35 | 1.9E-9 | ||
| Pfam | 307 | 356 | 50 | 1.0E-14 | ||
| ProSiteProfiles | 308 | 342 | 35 | 10.019 | ||
| TIGRFAM | 310 | 335 | 26 | 1.9E-5 | ||
| Gene3D | 339 | 406 | 68 | 2.8E-24 | ||
| ProSiteProfiles | 343 | 377 | 35 | 13.439 | ||
| TIGRFAM | 346 | 379 | 34 | 7.8E-11 | ||
| Pfam | 377 | 426 | 50 | 4.7E-18 | ||
| ProSiteProfiles | 378 | 412 | 35 | 13.263 | ||
| TIGRFAM | 380 | 413 | 34 | 8.7E-11 | ||
| PANTHER | 407 | 550 | 144 | 1.7E-180 | – | |
| PANTHER | 407 | 550 | 144 | 1.7E-180 | – | |
| Gene3D | 407 | 476 | 70 | 1.5E-23 | ||
| ProSiteProfiles | 413 | 447 | 35 | 12.101 | ||
| TIGRFAM | 415 | 449 | 35 | 4.0E-8 | ||
| Pfam | 444 | 474 | 31 | 4.0E-12 | ||
| ProSiteProfiles | 448 | 482 | 35 | 11.783 | ||
| TIGRFAM | 450 | 483 | 34 | 2.5E-6 | ||
| Gene3D | 477 | 553 | 77 | 9.5E-20 | ||
| Pfam | 483 | 529 | 47 | 2.5E-13 | ||
| ProSiteProfiles | 483 | 517 | 35 | 13.099 | ||
| TIGRFAM | 486 | 519 | 34 | 3.7E-10 | ||
| ProSiteProfiles | 518 | 552 | 35 | 10.019 | ||
| TIGRFAM | 520 | 550 | 31 | 0.0027 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0109900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…