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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0109900 |
Transcript ID | LotjaGi3g1v0109900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G62930.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic; TrEMBL-Plants: tr|A0A0R0IGR1|A0A0R0IGR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0109900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13573574..13576954) extracted from Lotus japonicus Gifu genome v1.2.
GTTGAGTTTGATTGGTAGACATGTTGAATGCAGCAATGTCACGGTCAAGATTAAGGTATGCTGTCTCTGTTTCCATTCTC AAGCTTCCTCCTTTTCTATACACTCGCTCTCACTCTCACTCTCAGTCTCTTCGCCCATCCATTCACGATGCTGATGATAA CACCGTTTCCTTGTTCAATCGCATGCTGTATATGCATCCTACCCCACCCATCTTTGAATTTGGCAAGATTTTAACCTCCC TTGTCAAGATGAAGCGTTACACCACTGCCGTTTCCCTTTTTCACAAAATGGAAACCAGGGGAATTAATCCAGACTTTATT GCTATGAACATCTTGATCAATTGTTTCTGCAACATGGGTCATATCCATTTCGCCTTTTCTGTATTGGGCAAGCTTTTTAA GAGGGGTTACCAGCCAAATACCATAACCTTGAATGCACTCATGAAAGGTCTATGTCTTAGTGGTCAGGTCAATAAAGCTT TGCAATTTCATGACCATGTGGTAGCACATGGATTTCTGCTCAACCAAGTTAGTTATGGGACCTTGATCAATGGATTGTGT AAAATGGGAGAAACAGGTGCTGCCTTGCAGTTGCTGAGGAAGATCCAGGGGCTAATGGTTAAGCCTACTGTGGTAATGTA TAATTCTATCATTGACTGCTTGTGCAAAGATAAACTTGTAACCGATGCCTATGATCTATATTCTGAAATGGTTGTCAAGG GAATTTTGCCTGATGTTCTCACTTACAATTCTCTATTGTATGGCTTTTGCATTCTGGGTCAGTTGAAAGAAGCAGTTGAT TTGTTAAATGAAATGTTTCAGAAAAGCATCAACCCAAATAATTATACTTTTAATATATTAATTGATGCTTTAGGTAAGGA AGGGAAGATGAAAGAAGCTAAAAATGTGTTAGCTATGATGATAAAAGAAGGCGTGGAACCGAATGTGGTTACTTATAGCT CTTTAATGGATGGTTATTGCTTAGTTAATGAAATGAACAAAGCAAAGTATGTATTCAACACTATGACCCAAATAGGATTG AGTCATGATGTCCGCAGCTATAGTATCATGATTAATGGTTTATGTAAGACTAAAAAGGTGGATGAAGCTGTGGATCTCTT TGAAGAAATGTATTCCAAAAATATCATTCCTAATACGGTAACATACAATTGCCTTATTGATGGTTTGTGCAAGTCAGGAA GAATGTCTGATGTTTGGAAGCTTATTGATAGGATGCATGATAAAGGTATACAAGCTGATATAGTCACTTACAATTGCATA GTAGACGCTTTATGCAAAAGCAATCATCTTGACAAGGCACTTGCATTATGTAGAAAAATTCAAGGCCAGGGTATTCAGCC TAATGAGTTCACGTACACTATACTTATTGATGGACTATGCAAAGGTGGAAGAGTTAAGGACGCACAGGATATTTTTCAGG AACTTTTGATTAAAGGCTACAATCTAAATGTCCAAACATATACTGTTATGATCAATGGGCTTTGTAAAGAGGGCTTACTT GATGAAGCATTGGCCTTGCGATTCAAAATGGAAGACAATGGTTGCGTCCCTAATGCTGTCACTTTTGAAATAATTATCCG GGCTCTCTTTGAAAAAGGCGAGAATGATAGGGCAAAGAAACTTCTTCATGAAATGGTTGCTAGAGGCCTGCTACTAAAAT AAAACAAGGTATGGTGCTTTCTAGTTACATATTATATTTTGAATTTTGACGACAACCATCCACTCATGTTTATGGTTATG CATAAAAAAGATAGTATATGTCATGTGCTTACTCTCACTCTAGATTTGGTTAAAATTCTGTCATTGGGTTCATTTTTATG TTCTAATCATAACAATGGTTGATTATTGCATCTTGACATAACTTTCCTTTTTCTTTGAAGTACAATGACGAACACCTCCT CTACTTTAAAATATTTATTCAATCTGTGGTCATTGTTGAATATGGCACAAATTATTTGCAATATAACTTTCATCATTGTC CTCTATTTTTTCATCGGATTTCCTCATTTGTCTGTCGTCTGAAGCCTTCCCTTTCCCGAATACCACATAACTTTTGACTC CTGTTTCATCCACTGCTTTCTGATTTAATCCTATACCCTTCTGCTCAACTTTGCCGAATATCATATGCCCACAAATTCTA ACTGTCAATGTTCGTGGTTTTCGGCTATAGCCAATTTAGTTGGAAGATTAACTAACAAGATAACAGCAACATAACCGTTC TGTAACAGAATCAACTAACTCCTAACACACTAATGTAAAGACTTCATTAGTGTGAACCCGAGCTATATAATATCTCTATA TAACAGTTCTGGATAGCCCTCCTCTATGTTTTGTCTTTTTCTTAAGTCCATAATCTAATATGATTTTTACCATCATGTGA GCTGTCCTGGCTGTTACATTCTCCTCTTTTGACTTATGTGTTGTGAGGAAGTCACTCATCTTTTGTCTTTGGGCTCAGTT GGTGTCTCTTCCTCGTACTGTAAACATAGGCTAACAGCATATCAACTGTTATGGGAGAAGTTCTCTTGAGATTTCATGTT TTACAAGTAGTACATTCTAACTACTTATGCAACTAATCTAACTGTTGAACAAGCAACACAATATATGAGTAATCTTGGTA TTACTCTTATAGATGAATATGAGGCAAGGTACAAAAATATATCGTTTGAATTTTTTGAAAACCAAGAGGCTTGAATTTTT TGACAACTTTGCTTTTCATTTCCATGACCCCCGTCTGAGGAACACATTAGACAGTAGAATTTAATTTAACTTTGTTATTA GTTTTAAATGGTTTAGAATTTTATGTTGCTACAATGAAGAAACCAAAATTTCCCTTTTGTGGGGATAAAAGGATAGATAA TAAGCTCTCATGTCCTCTTCTGTTTTTACTTTTTCAGGGGGAGGTGAGATTGAGGGACTTTAAATGTTATGAAAATTTAT TGAGATATCCATTGCAGTTCTCCTCTTTCATGTTTTCATTTTGATAATAGTATTGTTAATAAGGTCATGGATTCAGCAAA ATCTGCACAAAAGTTACAGCATATTGTGTTGTAAAATAAACCAAGATGTTGTTCAGGACTATGATGTTGATTCATGAAAT AATTGGGTTTTATTATTATTTTTTTCATGTAGGTTGTAAGATCTGGAGATTTGATTTCTAACTGTGCTGAAGAAGGGGTA AGGCTATGAGATGGTTGTCCAGAAAATTATAAGTGTGTGGTAGTATGGAGAGATCAGGCTCTCGAATTCCTGCTGTATTG TACTATTTCCAGTAGAGATTCTTCATCTTTGCAGTATCAATAATAACTATCCATTTCTCTATCTCTTTATCTTATCATTA CTCTACAGTCTACTAATGCAT
CDS sequence (LotjaGi3g1v0109900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAATGCAGCAATGTCACGGTCAAGATTAAGGTATGCTGTCTCTGTTTCCATTCTCAAGCTTCCTCCTTTTCTATA CACTCGCTCTCACTCTCACTCTCAGTCTCTTCGCCCATCCATTCACGATGCTGATGATAACACCGTTTCCTTGTTCAATC GCATGCTGTATATGCATCCTACCCCACCCATCTTTGAATTTGGCAAGATTTTAACCTCCCTTGTCAAGATGAAGCGTTAC ACCACTGCCGTTTCCCTTTTTCACAAAATGGAAACCAGGGGAATTAATCCAGACTTTATTGCTATGAACATCTTGATCAA TTGTTTCTGCAACATGGGTCATATCCATTTCGCCTTTTCTGTATTGGGCAAGCTTTTTAAGAGGGGTTACCAGCCAAATA CCATAACCTTGAATGCACTCATGAAAGGTCTATGTCTTAGTGGTCAGGTCAATAAAGCTTTGCAATTTCATGACCATGTG GTAGCACATGGATTTCTGCTCAACCAAGTTAGTTATGGGACCTTGATCAATGGATTGTGTAAAATGGGAGAAACAGGTGC TGCCTTGCAGTTGCTGAGGAAGATCCAGGGGCTAATGGTTAAGCCTACTGTGGTAATGTATAATTCTATCATTGACTGCT TGTGCAAAGATAAACTTGTAACCGATGCCTATGATCTATATTCTGAAATGGTTGTCAAGGGAATTTTGCCTGATGTTCTC ACTTACAATTCTCTATTGTATGGCTTTTGCATTCTGGGTCAGTTGAAAGAAGCAGTTGATTTGTTAAATGAAATGTTTCA GAAAAGCATCAACCCAAATAATTATACTTTTAATATATTAATTGATGCTTTAGGTAAGGAAGGGAAGATGAAAGAAGCTA AAAATGTGTTAGCTATGATGATAAAAGAAGGCGTGGAACCGAATGTGGTTACTTATAGCTCTTTAATGGATGGTTATTGC TTAGTTAATGAAATGAACAAAGCAAAGTATGTATTCAACACTATGACCCAAATAGGATTGAGTCATGATGTCCGCAGCTA TAGTATCATGATTAATGGTTTATGTAAGACTAAAAAGGTGGATGAAGCTGTGGATCTCTTTGAAGAAATGTATTCCAAAA ATATCATTCCTAATACGGTAACATACAATTGCCTTATTGATGGTTTGTGCAAGTCAGGAAGAATGTCTGATGTTTGGAAG CTTATTGATAGGATGCATGATAAAGGTATACAAGCTGATATAGTCACTTACAATTGCATAGTAGACGCTTTATGCAAAAG CAATCATCTTGACAAGGCACTTGCATTATGTAGAAAAATTCAAGGCCAGGGTATTCAGCCTAATGAGTTCACGTACACTA TACTTATTGATGGACTATGCAAAGGTGGAAGAGTTAAGGACGCACAGGATATTTTTCAGGAACTTTTGATTAAAGGCTAC AATCTAAATGTCCAAACATATACTGTTATGATCAATGGGCTTTGTAAAGAGGGCTTACTTGATGAAGCATTGGCCTTGCG ATTCAAAATGGAAGACAATGGTTGCGTCCCTAATGCTGTCACTTTTGAAATAATTATCCGGGCTCTCTTTGAAAAAGGCG AGAATGATAGGGCAAAGAAACTTCTTCATGAAATGGTTGCTAGAGGCCTGCTACTAAAATAA
Protein sequence (LotjaGi3g1v0109900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNAAMSRSRLRYAVSVSILKLPPFLYTRSHSHSQSLRPSIHDADDNTVSLFNRMLYMHPTPPIFEFGKILTSLVKMKRY TTAVSLFHKMETRGINPDFIAMNILINCFCNMGHIHFAFSVLGKLFKRGYQPNTITLNALMKGLCLSGQVNKALQFHDHV VAHGFLLNQVSYGTLINGLCKMGETGAALQLLRKIQGLMVKPTVVMYNSIIDCLCKDKLVTDAYDLYSEMVVKGILPDVL TYNSLLYGFCILGQLKEAVDLLNEMFQKSINPNNYTFNILIDALGKEGKMKEAKNVLAMMIKEGVEPNVVTYSSLMDGYC LVNEMNKAKYVFNTMTQIGLSHDVRSYSIMINGLCKTKKVDEAVDLFEEMYSKNIIPNTVTYNCLIDGLCKSGRMSDVWK LIDRMHDKGIQADIVTYNCIVDALCKSNHLDKALALCRKIQGQGIQPNEFTYTILIDGLCKGGRVKDAQDIFQELLIKGY NLNVQTYTVMINGLCKEGLLDEALALRFKMEDNGCVPNAVTFEIIIRALFEKGENDRAKKLLHEMVARGLLLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 45 | 196 | 152 | 4.7E-33 | ||
PANTHER | 49 | 238 | 190 | 1.7E-180 | – | |
PANTHER | 49 | 238 | 190 | 1.7E-180 | – | |
ProSiteProfiles | 63 | 97 | 35 | 8.67 | ||
TIGRFAM | 70 | 98 | 29 | 7.1E-5 | ||
Pfam | 71 | 95 | 25 | 0.23 | ||
SUPERFAMILY | 73 | 372 | 300 | 5.31E-6 | ||
Pfam | 97 | 145 | 49 | 2.7E-10 | ||
ProSiteProfiles | 98 | 132 | 35 | 9.975 | ||
TMHMM | 99 | 121 | 23 | - | – | |
TIGRFAM | 103 | 134 | 32 | 8.3E-5 | ||
ProSiteProfiles | 133 | 167 | 35 | 9.942 | ||
TIGRFAM | 135 | 168 | 34 | 3.5E-4 | ||
PANTHER | 142 | 339 | 198 | 1.7E-180 | – | |
PANTHER | 142 | 339 | 198 | 1.7E-180 | – | |
Pfam | 164 | 194 | 31 | 1.5E-7 | ||
ProSiteProfiles | 168 | 202 | 35 | 10.227 | ||
TIGRFAM | 170 | 196 | 27 | 7.8E-5 | ||
Gene3D | 197 | 267 | 71 | 3.0E-21 | ||
Pfam | 199 | 231 | 33 | 6.3E-9 | ||
ProSiteProfiles | 203 | 237 | 35 | 11.751 | ||
TIGRFAM | 205 | 239 | 35 | 1.4E-9 | ||
PANTHER | 222 | 448 | 227 | 1.7E-180 | – | |
PANTHER | 222 | 448 | 227 | 1.7E-180 | – | |
Pfam | 237 | 285 | 49 | 1.1E-16 | ||
ProSiteProfiles | 238 | 272 | 35 | 12.233 | ||
TIGRFAM | 241 | 273 | 33 | 5.4E-7 | ||
Gene3D | 268 | 338 | 71 | 1.2E-21 | ||
ProSiteProfiles | 273 | 307 | 35 | 12.671 | ||
TIGRFAM | 275 | 309 | 35 | 1.9E-9 | ||
Pfam | 307 | 356 | 50 | 1.0E-14 | ||
ProSiteProfiles | 308 | 342 | 35 | 10.019 | ||
TIGRFAM | 310 | 335 | 26 | 1.9E-5 | ||
Gene3D | 339 | 406 | 68 | 2.8E-24 | ||
ProSiteProfiles | 343 | 377 | 35 | 13.439 | ||
TIGRFAM | 346 | 379 | 34 | 7.8E-11 | ||
Pfam | 377 | 426 | 50 | 4.7E-18 | ||
ProSiteProfiles | 378 | 412 | 35 | 13.263 | ||
TIGRFAM | 380 | 413 | 34 | 8.7E-11 | ||
PANTHER | 407 | 550 | 144 | 1.7E-180 | – | |
PANTHER | 407 | 550 | 144 | 1.7E-180 | – | |
Gene3D | 407 | 476 | 70 | 1.5E-23 | ||
ProSiteProfiles | 413 | 447 | 35 | 12.101 | ||
TIGRFAM | 415 | 449 | 35 | 4.0E-8 | ||
Pfam | 444 | 474 | 31 | 4.0E-12 | ||
ProSiteProfiles | 448 | 482 | 35 | 11.783 | ||
TIGRFAM | 450 | 483 | 34 | 2.5E-6 | ||
Gene3D | 477 | 553 | 77 | 9.5E-20 | ||
Pfam | 483 | 529 | 47 | 2.5E-13 | ||
ProSiteProfiles | 483 | 517 | 35 | 13.099 | ||
TIGRFAM | 486 | 519 | 34 | 3.7E-10 | ||
ProSiteProfiles | 518 | 552 | 35 | 10.019 | ||
TIGRFAM | 520 | 550 | 31 | 0.0027 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0109900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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