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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0124100 |
| Transcript ID | LotjaGi3g1v0124100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|A0A0S3SJH4|A0A0S3SJH4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0124100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:15156376..15163693) extracted from Lotus japonicus Gifu genome v1.2.
AAGGCCATTCAGCTTTTGGGGGTGAAATTCAGCTTTTCCAGATTACCTCAAACACATCAACAACACAACATCATAAGGTC AGTCTCTCATGTTTCTGCCACCGATCCACCACTATCTTGTTGTCGGAAATCATTATCCTTTCGGTTTTTCAATTTTTGTT CCTCAATTGATGCGAAGCAATAGAGAATTTGTTGGAATTCGATTCAGAATTAGGGTTTGTAATTTGGGATCGTTTTCCAT TAGGAGGAGTTTTAGCCGATTTGATTCCTTGTTTTTCGAATATTTTCTGTCAATTTTTCATGATCGATCCATCAATAGCA TCATATCAAGTCCTTGATATTGAGGAATTATTTGGCCATAATTGTGGACTTGATGTGGCCGCAAAGACCTCAAAATCCAT GTTATGGCGGCCACAATCGCGGTTGCGGACCATGATTTAAAACCTTTATATGGTTGTGTTTATTGTCAATGATATCAGGT TGGCATTGAATTTAGACTGTCATTTAGTTTGGGTCCTATATTCTCTTTTTGGTCTTAACCAAGGCATTCCCACAGCCGAG GCTTTGAGATCACATTTGAAGTGGGTTGGCCTCTCCCAACAAATCATTCTCCATACACACGGCCCAGAGACACACAATTA TTTGTCTTTAAATTTTAGATTTAGATTTTACCATGTACTAAAAAATAGCATATTCAAGTTTAATCTACTGCTTCATCTAA AAAGCTTTGAAGTTTGCTTGTCAAACAGTTTGTTGCTGTAAACTACATAGTTTGGCTGTTAGCTAATGGACAAGGGGGTG CCACCTGCCATCTTCGCAAATGATGGTTCATTTATGGAAAGGTTCAAGCAACTTCAACAAGAGCAGGGAAAGGGGAAGAA TGTCAACATCAAGGATTCTAAACCAATTAAAGTTATATCAGGGTCTTTGTCTTCTAATCCTTCCATTAGTAAAATGTCAG TGGACTTGAAGGCAAGTGATGCACATAAAACACCCCAAGCTGGTTCCAGTGGCAAGCTAGCTTTCAGTTTAAAACAAAAG TCTAAGCTGGTGCCACCACCTGTTAAGTTAAGTGCTGATGAGGATGAAGAAGAAACAGATGTTGCGGATGTTCCAAATGA TGCACCACAGAAACGGCAAAAGTTAGGCCAGGAGAAGGGCACTGAGAAGTCATCAAGACAAGTTGATGTTGGTAATTGCT TCTTAAACTTTTTGGTTTCTATTGATAGATTGCCTGTGGTTGGTAGTCCTGCTGAATGCTGGGTTCTCATTAGAATTATC AATTATGAAGTAGTAAGGTAAATAATTATTTCATATTTAGCATTTGACTTGTTGTGCCAAGCCTTTCTATGTCATGCTTA TTTTTTCATTAAGATCTTACTGTATCCTTGTTATTTCTTGAGTAATTTATTTAGTTCATTTAGGCATGCTCTATATCTTC TAGCTGTATCTCATTATGATCATGATTATTTGTGTTAATATGTCATAGTTTCTAACCTACCTTCTAATTCACTTCCCTTC TCGACATCTCTCTTGTTGATTTGTTGGAAGTCCAAATATATCTGTTGTCACTTGTTACTTTTCATTAGATATAAAAATTA TACATGAGTCTTTTCCTAACAACTTCAGCTTTTGGGAGAGATAGGCCTTGGCATGATATTAGAGTCTCTGAATCAATTGA TCAGGGATTCAGTTATTCCAGTTTTTAATAAAGTTCAATTTCAGCTCGTAATGGGGTAGGCCTTTATACTGTCTGTGCTT CAAACTCAAAGGGCTCTTGGATGAGTGAGTGTGTTAGTATCCTAAGCATTATGGGCCTTCATTTTGGAGAGTTGGTCCTG GACTCTTCTGTCACTGTTTCCCATCTCAATTTTTTTGAATTCTATATCTTTTTTTTCCTTTAGTAAGAATGCGGTGTTGT TTGTATCTTTAATGATTTTATGAAAAATTTGTCTCTAAATTTTCCTTTAATGAGGTCCAAGAGCATGATGAAGGAATGGA GGAAGTACTCTACTTCCTATTTCTAAAAGTAAAGGTGATATATAGTTGTACTGCGAAACTTTGGGAGAGAGTAATTGAAG AGAGAGTAAGACTAGATTCCCATATCTCAATGAACCAATTCGATTTTAAGCTGGGATGATCAACTATGGAAATGGAAGCT GTATATTCGATACAAAAGCTCATGGATAGATATTGGCATAACAAAAGAACTTACTTATGGTTCTATTGATTTGGAAACGA CATATGATGAAGTACTTAGAAAGGTTTTGTAGAAGGTTCTAGGGAAGAAGTTAGAGTTCCTTACATTCATGTAATAAAAG ATATGCATGAGGGGGTCACAGCTAGTGTGAGGACACGAGGAGAGTAAACGATTTTCCATATAATTAGAGGTGTGGTGTGC ACCAAGGGTCAACTCTAAGCCCTTATCTTTATACTTCGTTCTAGACGTGCTTATTGAAGAAATCCGAGAGCAGTACCACA GTTCATGCTGTTTGCAAATAATATTTGTCTTAGTTGGAGATTTGAGAGTGGAAATAAATGAAATTTCAGAGAGGTTTCCA ACATGATTAGTGATCACGATAGAAAAGCACCACTCAAACTTAAAAGATAATTCTACCGCATAGCTATAGGACTTAAATTC TGTATGGTGAATACTAGGCGATAAAAAGATAACAAGAAATAAACTTACTCTAGCAAAGATGAGAATGTTAAGATGGTTGA GTGGTTACAAAAAGTTTGATGGGATTAGAGATTTAATTCTCAGAGAAAAACTTTCCTGTTGTAGAAAAAATGATAGTCTC GTCTTTAGTTGGTTTGAGCTTGTATGGTGAAGAACTGGAAGGAGGGTTGATCAGATGTAAGAATTCCACTAGTTAGGGTT AGAGGGGGATCTAGGAAAACTATAGTCCAAGTCATCAAGAGAGATTTATAATGTACATGTAAACTTAATGTACGGAAAAG TATTAGGGCTAGACCTAGCTGACCCCACCTAGTGGGAAAAGGTTTAGATGATGATGATTAAATTTTCTGTTTCAGTGTGG TTTATCTTTTCCACTTGGGATTGGAAGGAAGGAGGAGATAAGTGCAAGACAATCGAAAATAAACTCAGCCCTTTCATTTA TAGTCATACTTTGGGTCACATAGAGGAAGTGTATGAGTCGGAAGAAAGGTGCAAACTTGGGTTGTTTGTGAAACTTGTTC AAAAATTTCCCCTTACAGAATTTAGGTGAACGAAGATGCCTTTATAGGCATACTATTGCAATTACTCTACCCCTGCCCCC TTTTTTTTCCGCATGAAAGGGTCATCCTCTGCATTAAACGCAGTTTCATTATTGAAGGGGGCATCTCGGTATATACCTTC TTTGCTCATTAAAGTCACTTGCAGCAAAGAGGAGAAAAATGTCTTGAATATTTCTGTCTCATGAATGCAGCTTATTCCTC AAGTACCTATCAAGAATGGTGTATTGGCAAGCCTGCTACAAGACTAATTTGCATTCCCTTGTTCATGCTCTCGGTATTAA TCAGTTTTATAAGTGATATGCAGTACCTCCTTCTCCAAGTGATCCTACAGTGAAGAAAGTAGCTGACAAACTGGCAAGTT TTGTGGCTAGAAATGGAAGGCGATTTGAGGATGTCACACGTTCAAAAAATCCTGGGGATACACCTTTCAAGTTAGTATAG GGTGAACTTTTAATCCTTTAAAATTGATGTTGATGATGCTTCCTACTTTATGATTATCTTTGATCATGTTTTAACTTGCA GGTTTTTATTTGATGAGAGATGTGCTGACTACAAGTATTATGAATATCAACTTGCTCAAGAGGAAAAGGCTCATATGCAG TCCCAGGAATCACAGGCGCCTCCTAATGGTTAGTATCTTGATAGACATTGGTCCAGAAATGCAAATATAGAAAATTTATT AACGTGATCTATGTTAGTCCTAGGCCAACGGAAAACCAAATACGAGGAGAAAGAATGAGTACAGAACTGTTTTCCCTAGA AATTCAAGAGTCAGGTCTTTCTCACCCAAAACTATGTGATGAACTAACTGCCCTCACTTACATTCTCTATCTCTGCTACT GCAGTTTGAGGCCTGACTAACACACTTGACAGCTTTAGCTAACATGGTTTAACTAACAAAAGTTGGCTCACTTGGCTCTT TTAATCCTTCCTTATTTTCTAACACATTGCAAACGTATTTCAATATATTTTCATGTTTTTTTAAAAAAGTCATTAAGGTG TCTTAGCTGCTATTTTGGTCAAGAAGTTATAACTGGCTTTTTCATTTGAAGTTTTTGGCCTTTTGAATAGAAATCTTTGG TCATGTTTATTGCTGCTGATGTTAAAATATCTTGCATGTTTGTTTTTCAATTCAATGCTCTTCAGCTCTTGTATTGATAA GTTTTAAAAGAGAAGGCAATTGATTGACCCAGTATGTTTTTACTTTTGCAACTACTCAAACATACATTTGCTCCACTAAA ACAAATTGTTGCTTCTGTGTTGGTGAGTTGGAATTCATGCCTGCATATTCCCAACTTCCAAGCACAACTTTAGTTGCCGA CGTGAGTGGGTGGGATTTTGTGCAAATAAAAAGTTATCCCCAAAACTAATCATAGTGAATAATATTCCCATTTTAGAGTT TCTTATTTACTTAGACCCCAATACAGACCAGTGTTGATGTGTAAGAATTGTATCTAAAATGGATTTTTATTTCATTGTAA GTTAGAAATCTCATTGCTACCGCAAAATACCATATTTAACCCATACACTAATAGTCCTCTTCTCAGCAGTGAGAGGATGA AAACTAATGTATGAGAATGATAAGAACCATACGACAAAAGTTAGTTCTTCTAGTTGAAGAGCCCAAGGCCTTATAAACCC CAGACCAGAATCTTATTCTTCCAACATGGGAGTATGGGACTGAAGTCTCATACCTTGTAAATGGATTCTAACATCCCATC ACGCTCCTCAGAGCCTCACATCGACAGGCTGTGCATTAGCCCTTTGACTCATCACATGAGAACATTGCAATGGTAGTGTC ACCTCCAGCGGTGTTTGTTTGTAGAAAAGAGGTGTAAATATCCGATACCAATTGATAAGAACCTTTGGAGAATCATATAA CAAAATCAAGCTATTGTTGTTGAAGAGCCCAAGGTCTTATAAACTCCACACCAGAATCTCACACTTCCATCATGGGACTA AGTCTCATGCATTACAATTGGATCTTAACATACACTTGCTGGTTTTCCTTGTGCATTATGAGACTTGTAAGTCATATAGT CCGTCATATTCTCAATCTAATAGAGAGAACAACTATATTACAAGTCATTTTATTGATCTTAATGAAGTAATATATTATTC TCTAAGCAAGCTTGGAGATAAAGATATAGTTTTGAATTCTTTGGAGGTCGTGCAATAAAGATGTGTGACTGCAATGGTTA TATAAGTTAAACTGAAATTGGTTCGTCATGCCTGCTCATGTCTTTATTCTGATTTTGCATTTGAACCACGGTTATGTAAG TTACTCTAAAAGCACTAGTCTTGTGATATGTCTCATAGTAGTGGTGCTTCATTCACCAACTAGCCTGTGGATTTGAGAAA TCTTGCTCTCTTTGATTTGTGGATATGCCTTCTCTTTTACATCCCATGGTTTATTTTAATTTGGCATTTCATGATGGAAT CTCAATATTCAGGGTGTACAAGCACTTCGTCTTCCATACAGACAAATGGTCCTCAAAAATCATCTCAGCAGCGTACAGCC TACCAAATCCCTGCATCTGCTTTATATGAAAGTGGTGGCAATTCAAGGGCTTCTGTATCTTCAATTCAAACATTATCAGC AGGAAGCATTGGTATTTGTCATACACTGTGTTTTTGGTTGTATTAACAATTTCTATGTTTCATCTCCATTTGCCTCTCAA TTGAATAAAGTTCAGGATGTACTGAACATGAATCATAAACTTGTTCACTTGCATTGTAATTAGTCCCCGAAGGGGGGAAA AGTCTGAACCACATACTGGACTATTATTACTCTTCTCATTGACTTGGTGTGCGACTTTTGTTGCTTTATGATGTGTGTAT TTTCACTGCAGAGGAACCCAGTGTTTCATCAAGTGCTGATTCCTTAGCACTGATGGAGTTCTACATGAAGAAAGCTGCAC AGGAAGAAAAGTTTAAACAACCTAAGCAGTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCAAGGTTAAAAGTTTGAT TGTTAATGGCTTTCTATTGGTCTTAATATACACTTTTCAAATAGTTCCTTTTGTGCACTTCTTTTCATGGCATAATCTTT TGTTTCCTTTCTGGGGACACACATCTCCAGGTAAGAAAGGCCATCACATGGATGATTTCATTCCACCGGAAGAACTTAAT AAGTTCTTGGCTAGCTGTAATGATGCTGCAGCACAGAAAGCTGCCCTGGAGGCTGCAGAGAGGGCTAAAATCCAGGCTGA TAACGTTGGTCATAAGCTCTTGTCAAAAATGGGTTGGAAAGAAGGTTCTCTTCTTTGTCCCTTTCCCACTCTTATTGTCA AGCCCTTGAGTGTATTTTAAAGATTTGTCTCGAAGTAATCTGCTTCAAGATTTTGTGTTGTCTGAGTACTATATTTTTAT TATTGAATTTTATTTTGTAAAACATAAGTTTGATATTACATTTGGATACACTTGGAAAACCAGTGAGCCAGAATCACGGT ATAGAAGCAACTTTCCTTAGCTTTGTGGCTGTCCACCGTGATTCTGGCTTCACCGTGTATCCGAACATGCACATTAATGT TTATGATATTTAAATTATTGTTGTTCCGGTGTTAACAATCATGACTTCCAGGTGAGGGTCTGGGCGGCTCTAGGAAGGGC ATTTCGGATCCTATCATGGCAGGTAACATTAAGAAGAATAACTTGGGGGTTGGTGCTCACGAACCTGGGGAGGTGACTGC TGAGGATGACATATATGAGCAGTACAAGAAGCGGATGATGCTCGGCTACCGCCACAGACCCAATCCTCTGGTAAGTAATG TGATGGTTCCCTTTTCCGTTTTCTGAATATGTTGGAGTGGCAATGCTTGGGTCAATATAATAACCTGGTTTTCATGTTTT TTGATTGATTTTACAGAACAATCCTCGCAAGGCTTATTATTGAACATCACAGTGGAAGCCCCGGACAACTCTGCTAGGGG TAGTAAACTTTATATCGTTGGATAAATTAGTGTATTGGTTGTGGGATTTTGTGAGATTGTGTGTAGGCTTCACTTGTTTG GGTCTTCTAAACTTCAGACTTGGGGGACGTTTTTTTTA
CDS sequence (LotjaGi3g1v0124100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAGGGGGTGCCACCTGCCATCTTCGCAAATGATGGTTCATTTATGGAAAGGTTCAAGCAACTTCAACAAGAGCA GGGAAAGGGGAAGAATGTCAACATCAAGGATTCTAAACCAATTAAAGTTATATCAGGGTCTTTGTCTTCTAATCCTTCCA TTAGTAAAATGTCAGTGGACTTGAAGGCAAGTGATGCACATAAAACACCCCAAGCTGGTTCCAGTGGCAAGCTAGCTTTC AGTTTAAAACAAAAGTCTAAGCTGGTGCCACCACCTGTTAAGTTAAGTGCTGATGAGGATGAAGAAGAAACAGATGTTGC GGATGTTCCAAATGATGCACCACAGAAACGGCAAAAGTTAGGCCAGGAGAAGGGCACTGAGAAGTCATCAAGACAAGTTG ATGTTGTACCTCCTTCTCCAAGTGATCCTACAGTGAAGAAAGTAGCTGACAAACTGGCAAGTTTTGTGGCTAGAAATGGA AGGCGATTTGAGGATGTCACACGTTCAAAAAATCCTGGGGATACACCTTTCAAGTTTTTATTTGATGAGAGATGTGCTGA CTACAAGTATTATGAATATCAACTTGCTCAAGAGGAAAAGGCTCATATGCAGTCCCAGGAATCACAGGCGCCTCCTAATG GGTGTACAAGCACTTCGTCTTCCATACAGACAAATGGTCCTCAAAAATCATCTCAGCAGCGTACAGCCTACCAAATCCCT GCATCTGCTTTATATGAAAGTGGTGGCAATTCAAGGGCTTCTGTATCTTCAATTCAAACATTATCAGCAGGAAGCATTGA GGAACCCAGTGTTTCATCAAGTGCTGATTCCTTAGCACTGATGGAGTTCTACATGAAGAAAGCTGCACAGGAAGAAAAGT TTAAACAACCTAAGCAGTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCAAGGTAAGAAAGGCCATCACATGGATGAT TTCATTCCACCGGAAGAACTTAATAAGTTCTTGGCTAGCTGTAATGATGCTGCAGCACAGAAAGCTGCCCTGGAGGCTGC AGAGAGGGCTAAAATCCAGGCTGATAACGTTGGTCATAAGCTCTTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGG GCGGCTCTAGGAAGGGCATTTCGGATCCTATCATGGCAGGTAACATTAAGAAGAATAACTTGGGGGTTGGTGCTCACGAA CCTGGGGAGGTGACTGCTGAGGATGACATATATGAGCAGTACAAGAAGCGGATGATGCTCGGCTACCGCCACAGACCCAA TCCTCTGAACAATCCTCGCAAGGCTTATTATTGA
Protein sequence (LotjaGi3g1v0124100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKGVPPAIFANDGSFMERFKQLQQEQGKGKNVNIKDSKPIKVISGSLSSNPSISKMSVDLKASDAHKTPQAGSSGKLAF SLKQKSKLVPPPVKLSADEDEEETDVADVPNDAPQKRQKLGQEKGTEKSSRQVDVVPPSPSDPTVKKVADKLASFVARNG RRFEDVTRSKNPGDTPFKFLFDERCADYKYYEYQLAQEEKAHMQSQESQAPPNGCTSTSSSIQTNGPQKSSQQRTAYQIP ASALYESGGNSRASVSSIQTLSAGSIEEPSVSSSADSLALMEFYMKKAAQEEKFKQPKQSKDEMPPPASLQGKKGHHMDD FIPPEELNKFLASCNDAAAQKAALEAAERAKIQADNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGNIKKNNLGVGAHE PGEVTAEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 437 | 431 | 1.2E-159 | ||
| PANTHER | 7 | 437 | 431 | 1.2E-159 | – | |
| MobiDBLite | 43 | 58 | 16 | - | – | |
| MobiDBLite | 43 | 148 | 106 | - | – | |
| MobiDBLite | 109 | 130 | 22 | - | – | |
| SUPERFAMILY | 128 | 199 | 72 | 2.35E-16 | ||
| Gene3D | 128 | 206 | 79 | 2.1E-22 | ||
| SMART | 146 | 200 | 55 | 1.1E-13 | ||
| Pfam | 147 | 196 | 50 | 1.5E-11 | ||
| ProSiteProfiles | 148 | 191 | 44 | 13.062 | ||
| MobiDBLite | 199 | 250 | 52 | - | – | |
| MobiDBLite | 291 | 315 | 25 | - | – | |
| SMART | 352 | 399 | 48 | 8.7E-14 | ||
| ProSiteProfiles | 354 | 401 | 48 | 16.99 | ||
| Pfam | 355 | 398 | 44 | 3.8E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi3g1v0124100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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