Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0127600.4

Overview

Field Value
Gene ID LotjaGi3g1v0127600
Transcript ID LotjaGi3g1v0127600.4
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description GTP 3',8-cyclase; TAIR: AT2G31955.1 cofactor of nitrate reductase and xanthine dehydrogenase 2; Swiss-Prot: sp|Q39055|CNX2_ARATH GTP 3',8-cyclase, mitochondrial; TrEMBL-Plants: tr|I1KTQ5|I1KTQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0127600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:15687722..15691685) extracted from Lotus japonicus Gifu genome v1.2.

TATTTATTACTATTGAAGGATTAATTGTATCAATTCAACAATACCCATTTGCATGCAGGTGAGGATTGTTAATTTTTTCC TTTCAAGGGATTGTGTCTAATAATGTTAGTTAACTAATAGCTAGATCTCATGCTGTGTGTATTAATCTGGGTTCAAATTG TTCTTATGATAACAAATTTTCTTAAAGCAGGTGAATTGTGAGATGGGGTCTTACTTTGCTGCCAGAAATTGTAATCTTCA AGGTTTATTGAATGGAAGCTTGCATGAGTATTCCACAGGGACTTTTGCAGCATCTAGTGCTTCATTGTCTGAAGATCAGC CAAAAGATAGTTCTGTTTCTGATATGTTAGTGGATTCATTTGGAAGGCTTCACACTTACTTGAGAATATCTTTAACCGAG AGGTGCAATTTAAGGTGTCAGTATTGTATGCCAGCAGAAGGTGTGGAACTCACTCCTACCCCTCAGATTTTAACAAAGGC CGAGATTCTGCGGTTGGCGGATCTGTTTGTAAGCTCTGGTGTGAATAAAATACGTTTGACGGGTGGCGAGCCGACTGTCA GAAAGGATATTGAGGACATATGTTTGGAATTGTCAAACTTGAAGGGACTTAAGACATTGTCCATGACTACAAATGGTATT GTTCTGGCAAGAAAACTTCCAAAGCTTAAAGAATGTGGTCTTACTTCTTTGAACATTAGTTTGGACACTCTGGTGCCAGC AAAGTTTGAGTTAATGACGAGGCGCAAAGGGCATGAAAAAGTAATGGATTCGATTAATGCTGCGATAGATCTTGGATATA ATCCGGTTAAGGTATTTTTTTGGTCTTCTTGCCAAATTAAGTTATTCAAATGAGATGTACAGCATGTGAATTTTTCATGT TTAAGGGTTATCCTCTATGGTGAAATTCAGACGTTAATCATGGATGCATTTTAAGGTGACTTGTATGTTCCTGTTGCATT TCAGGTCAATTGTGTTGTAATGCGTGGATTCAATGATGATGAAATCTGTGACTTTGTTGAGTTGACTCGTGAAAAGCCAA TTAATATTCGGTTTATAGAGTTCATGCCTTTTGATGGAAATGTTTGGAACGTCAAGAAGCTTGTACCCTACGCAGAAATG TTGGATACAGTGGTAAGGTAGAATTCACACTTGAAAACTCACTCATATAGTTATATTCTCTTATAATAGAGACCCTTCAT AATCATTGTTACCAAACAGGTGAAACAGTTTCCAAGCTTAAAAAGACTGCAGGATCACCCAACAGAGACTGCAAAGAATT ATACAATAGATGGGCATGCCGGTAGAGTTTCATTTATCACATCAATGACTGAGCATTTTTGTGCTGGTTGCAATAGATTG CGACTACTAGCTGATGGAAACTTTAAAGTCTGTTTATTTGGTCCTTCAGAGGTAATTTATGTTCTAACCATCAAAGTTCA GTATATTATGCATGTCACCTAAATTTGGTGATACAAATTCGGCTAGAATCAGTGATGTTTGATATATTTGGAATACTTAA TGCTTTGGGTGAATCAGCGAGGTTATAGTTGATGATGATAATTGCAAGCTTTCTAAATCCAAATAGGTAAATGAATTGAA TAATTAGTTCATATGGCTAAAGTAGGATTTAAGGAAATGGTATTTTAAGGCCTATAAATGTTCTTGATGAGGACAATTCG AACCAATGCAATTACAAACGTACAGTTTACAGAATAAAAGATTCCTTGGAGTTAGCTACTGCTGTTGGGTATGGTTCTGA GAGTTGTTTTCTACTGGTGATCATCACTGGCTTTACGGATTAAGGGGTTCCAGAATGAGCAGCACCAGATCAGGAATTTG AACCTGAAATTTCTGTTGCCAGGCCTGATTTCTTGATTTGATATATTCTCAAATTTTGGGAAAAAGGGAAAGTATCTGAT AAAGGCTTACTAGGCGAACATAAATTTCAGAAATTAATATGCACATTAAGAAGTATAAAATAATAGCCTTCAGTAAGTGG ATTTATTTAGTCAGTCCCAAAGCTTGTTTGTAAATAATGCAAAATTAGATATACATGAGGACATGATCTTTAAAATCATC TATGGCATTGCTTTATCAGATGCAGGATTTTGACTTGACAGGTAAAAATTAAACATGCATTTAGTAAAATCATTTTGTCA AAAATGAGAGCTTGTTTGATCCTTTCCTTGTGCTGCATGAAGATTTTTAAGCCACAAATTGGTTATGTCTTTGCTTTCTC TGTCTCTAGATTACCAATCTGTAAAATAATGTGATGCTTGGTTTTCTTCCAAGTATATTATAATTTGCTATTGGTTTGTG AGTGACTGAACTACAAATTCCGTAGGACTTTAGGTGACATTGAGTTCAGTGATATGAAAATAATTAGGCAAATAAGTCCA CAGCATTGACTTATTAAGCAATTGAATGATCTCTTTCTGTATTGAAGTATTGTGTTCAGATTTTGGGATTGAATAGGCAA TTTCTAGCCCCTTCCTCTTTTACATCCTCATTCTAGTGCATATGCTATTTCATTTGGTATATTCCATTTAGTTGATGTCT TATAATTTCTTAGATATATCATCTGGATTCTTAATCTTATACATATCTGCTTGTTAATGTTGTTTGCTTTATCTAGCTAA GACTTGAGAACCAGCTCATTTTTCTATTTTGGAATGGTGTTGAAAGTAAAGTGCATCTTATAAACCTATTCCATTTGTTA ACTTGATAAGCATTCTCGTTTTACAAACATACTGGTGGTTACTTTCTTATTGATATTATATGTACCGTTAATATGTTCTG GTTAAATGTGCATTATGTATGGATATTCAGGAATCGAGGAATTTGAAAATGTTATTCACTGAATTGCTCGAGTCAATTGA ACCTGGTGTGTAAGGTTTATATATACATTATAATCTACTATTTACAAGAAGAAGAATACAACAACGACAATAACCAAGCC TTTTCCCACTAGGTAGGGTCGGCTGCATGGATTACATGACACCACAATGCCTTGTTATGTATTAAATTTTAAAGATAGAT CATTAACCTCTAAATCTCTTTTAATGGTTTGGCTTATGGTTTTCTTTTCTCCCTCTACCTATGGCTTTTTAACCACCCTT CATCTCATCCCTCTCGCCAACCTTCCTTATGGGTGCTTCTGCAAGTCTTCTTCACACATGCCCAAACCACCTAAGATGAG ACTACAACCTCTTTTACCTTAAGAACTACAAGAAGAATAATAAGTAGGCTGAAACATTTCCTAAGAAATGAGGGTTCCAA AGCTGTTTGGAACAGGTTACTCATTGAATAATTAGTTAATTACTATATCTTGTGTTTCCAATGCCACCTGAAGCTAATTT GAACAGTAAATAATACCCTTGGTATGAGAATTCCATCAGATACTGGCATGGACAGTGAAAACCAGTAATTAAATACATGT AGCATCTTTCACGTGTAACTTCACCTTCTTACCTGGGATCATTGTCTTGCAGGTTAGCTTAAGAGATCCCTTGCGACAAG GTGCAGAGGATCATGAGCTTAGGGAGATAATCGGGGCAGCGGTACGCACTTCTGGTTATTAATGCTAAGACTAAGAATTT CATTGTGATTATTCAGTAACTTTGTTAATATCTCAGGCAGATTTATTATGCTCTTCAATATGATGATAGATAGACTTCGT TTACATGCCATTTTAATGTAGTTTGTTAAATTCTTCCCTAGTAGATAGTTATGTCATCACCTTCTATATGGCTATAGTAT GTAGTAAAATAGTCAAGAAGTTCAATTACCACTTGAAACTGTATAGCTATGTTTAAATTAGGCTACTCTATGGGGTGTTG TACTATTACGTTTTTAAGTGTTTCCTTTTCTTTGCTCTAGGTGAAGAGGAAGAAACGTTCACATGCTGGTATGTTTGACA TAGCAAAGACAGCAAATAGGCCTATGATACATATTGGTGGATAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0127600.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGGTGAATTGTGAGATGGGGTCTTACTTTGCTGCCAGAAATTGTAATCTTCAAGGTTTATTGAATGGAAGCTTGCA TGAGTATTCCACAGGGACTTTTGCAGCATCTAGTGCTTCATTGTCTGAAGATCAGCCAAAAGATAGTTCTGTTTCTGATA TGTTAGTGGATTCATTTGGAAGGCTTCACACTTACTTGAGAATATCTTTAACCGAGAGGTGCAATTTAAGGTGTCAGTAT TGTATGCCAGCAGAAGGTGTGGAACTCACTCCTACCCCTCAGATTTTAACAAAGGCCGAGATTCTGCGGTTGGCGGATCT GTTTGTAAGCTCTGGTGTGAATAAAATACGTTTGACGGGTGGCGAGCCGACTGTCAGAAAGGATATTGAGGACATATGTT TGGAATTGTCAAACTTGAAGGGACTTAAGACATTGTCCATGACTACAAATGGTATTGTTCTGGCAAGAAAACTTCCAAAG CTTAAAGAATGTGGTCTTACTTCTTTGAACATTAGTTTGGACACTCTGGTGCCAGCAAAGTTTGAGTTAATGACGAGGCG CAAAGGGCATGAAAAAGTAATGGATTCGATTAATGCTGCGATAGATCTTGGATATAATCCGGTTAAGGTCAATTGTGTTG TAATGCGTGGATTCAATGATGATGAAATCTGTGACTTTGTTGAGTTGACTCGTGAAAAGCCAATTAATATTCGGTTTATA GAGTTCATGCCTTTTGATGGAAATGTTTGGAACGTCAAGAAGCTTGTACCCTACGCAGAAATGTTGGATACAGTGGTGAA ACAGTTTCCAAGCTTAAAAAGACTGCAGGATCACCCAACAGAGACTGCAAAGAATTATACAATAGATGGGCATGCCGGTA GAGTTTCATTTATCACATCAATGACTGAGCATTTTTGTGCTGGTTGCAATAGATTGCGACTACTAGCTGATGGAAACTTT AAAGTCTGTTTATTTGGTCCTTCAGAGGTTAGCTTAAGAGATCCCTTGCGACAAGGTGCAGAGGATCATGAGCTTAGGGA GATAATCGGGGCAGCGGTGAAGAGGAAGAAACGTTCACATGCTGGTATGTTTGACATAGCAAAGACAGCAAATAGGCCTA TGATACATATTGGTGGATAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0127600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQVNCEMGSYFAARNCNLQGLLNGSLHEYSTGTFAASSASLSEDQPKDSSVSDMLVDSFGRLHTYLRISLTERCNLRCQY CMPAEGVELTPTPQILTKAEILRLADLFVSSGVNKIRLTGGEPTVRKDIEDICLELSNLKGLKTLSMTTNGIVLARKLPK LKECGLTSLNISLDTLVPAKFELMTRRKGHEKVMDSINAAIDLGYNPVKVNCVVMRGFNDDEICDFVELTREKPINIRFI EFMPFDGNVWNVKKLVPYAEMLDTVVKQFPSLKRLQDHPTETAKNYTIDGHAGRVSFITSMTEHFCAGCNRLRLLADGNF KVCLFGPSEVSLRDPLRQGAEDHELREIIGAAVKRKKRSHAGMFDIAKTANRPMIHIGG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22960:SF26
50 378 329 3.1E-156 –
PANTHER
PTHR22960
50 378 329 3.1E-156 –
Gene3D
G3DSA:3.20.20.70
51 379 329 1.1E-108
IPR013785
SFLD
SFLDS00029
52 379 328 0.0
IPR007197
SFLD
SFLDG01383
52 379 328 0.0 –
SUPERFAMILY
SSF102114
55 343 289 6.02E-74 –
TIGRFAM
TIGR02666
55 379 325 1.4E-110
IPR013483
Hamap
MF_01225_B
55 379 325 36.537
IPR013483
SMART
SM00729
64 267 204 4.3E-11
IPR006638
Pfam
PF04055
68 229 162 6.9E-33
IPR007197
CDD
cd01335
68 266 199 3.09136E-19 –
ProSitePatterns
PS01305
70 81 12 -
IPR000385
Pfam
PF13353
71 183 113 1.0E-6 –
Pfam
PF06463
235 361 127 5.1E-38
IPR010505
CDD
cd05644
255 322 68 0.00710761 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0006777
Biological process Mo-molybdopterin cofactor biosynthetic process The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands.
Subterm of
GO:0019008
Cellular component Molybdopterin synthase complex A protein complex that possesses molybdopterin synthase activity. In E. coli, the complex is a heterotetramer consisting of two MoaD and two MoaE subunits.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of
GO:0051536
Molecular function Iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
Subterm of
GO:0051539
Molecular function 4 iron, 4 sulfur cluster binding Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0127600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…