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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0131800 |
| Transcript ID | LotjaGi3g1v0131800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase RGLG2; TAIR: AT1G79380.1 Ca(2)-dependent phospholipid-binding protein (Copine) family; Swiss-Prot: sp|Q9SAL0|RGLG4_ARATH E3 ubiquitin-protein ligase RGLG4; TrEMBL-Plants: tr|A0A151QXI5|A0A151QXI5_CAJCA E3 ubiquitin-protein ligase RGLG2; Found in the gene: LotjaGi3g1v0131800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:16530575..16536639) extracted from Lotus japonicus Gifu genome v1.2.
CTGTGTGAATTTTCTGGGAACCACTCTTGCACCTTCGTTCACGTTACGTTTTGAATGAATCACACGGCCACATTTAATTT ATTCTCGTGACCACAAAATCACATACACATATATCTCTTTCTTTGTTGGAGAACTTAATTAGTTGAAGATGCCATGGGCA ACCTCTTTGGTAGAAATAAAAAGCATAACCCTCAATTTTCTAGATTTGATAGAGGAAGAGAGGGAAGAATCTCCTCCTCC GTAAGTGGCAGACCCTTAAGATCACCTTTTCCAACTGAGCTACCCCGGCCACCTCCACCACCGCCACCACTACCGCAAGC GCCACGACTAGCCGTACCACAATCTAAGAAACCAGCTGGTTATTGGACAGGTAATTCTGAAGAAAGTTCAGTAGCCATGA ACAGCAAGAGCAAGCAATCTGCCAAGAAATATGCTCTGATTCGTGATAACTTCAACACCCTTGAGCAGGTACGCAACTAC TCATGCTTCTCTTTCTTTCTTTACTAGATTAAAAATATATATGCATTAGTACTCTTTGGTCTATAGAGGGAGAGGCTGGG CTTTTTTATTTATTTATATGCCCTCAAAAAAAATATTTTATTTATTTACATAATTTATAAAATTCAATTCATTTTAGGAT AGTGCCACTGCTCAAATGTGTTAGTGTTAGACATGGGATTCGAAAATGAGGCAAAGGAAGTTCCCAATATGTAAGGGGGG ATGATGGGCTAAGTCACAGGTCATTTAATTTCCATTCTTATGTTTTATGGTCTTGGTCACGACAGCCACTGATGACAATG AACATAGTTATTAACTGGAAACATTTTAGTTATCGTACTTCATTTTTAATTTGGATTTATTAACATTATAATTATAATTA TAAATATAAAAGAAACTATTTATGCCATACTTTTGTAAAAGGATTTCTACATTAATTGTTTTTTTTTTATAATCATTTCT ACATTAATTGTTATGTTAAAATATTGTTATAATTGCCTGGTTTCAAGTTGTCATGTTTGATTCACATAAAGTAAGATTTT GAATTCGAGCTCTATATATGAAGTAAAAAAGCCTATGTCGGCAAAGCTATATTCATAGTGATTTGATAAGTTGACACGTA AATGAGTCATTTTATTAAATAGATAAAATCCTATATCCATAATCAGAAATTAGAATCTAAATTCTATTAGCTTTATCTAA ATAATGAAAATAAAAATAGCTTTTGAATGACAAGTACATTTAATGTAAGATAAATCACAAGCGAGTGAATGATCAAATAA ATCTTTGAAGCCCACCAACTGAGATTTTATTGACCCATGAGGATTCAAACTCTCAACTTATGAGGAGATGAGAGTTAAAC TCCTAAAGCCAGTTATGCCAACTCATGTTAACATGAGAAAATGGACCAACACACATTTTTTTTTTTTGTAGTTTCTCAAA TTTGAGAAGAATTCCCATGAACTCGTCTATATTTTTTTTTTCTATAACATTGTAAATTAATTTTGAAGCTCAATAAATAA TTAAATAATATAGAAATTAAAAAAATAGGAAAATTATATTATGAATTAAAAAAATTAAAATATGTTAAGCTTTGGACTGT ACCTATCGCGCGTGATTTGTTAGCGCCGTAGTTGTGTTGGTTTTCTTCCCATGCACAAAAAAAAAATTATATAAAAAATT TAAAATCAATTTATCATATTTATATTTGAAATATTAATGTTATCTGCATAAAAAAATCAAACTTCTCTCTTTTAATTTTC TACAACTAACATATGAATCTACTTTATTTCGCACGTGTTTTTTTCTACTCATATTCTCTCTTCTGTTTTGTATCTTCTCA ATCTCTATTCCCCGGCAAACTGTAAAGCTTGGAAAGTATACGCAGCATTTGTCTTGCAATGAACATTGGTAACGGTGTTA CACAAATCAGAGCTATAAAAATAGTTGTTATCAGTGAATTGTAAGCTACCATGTGATTGACAATGTGTATTTTGCAGGGG ATTTCATGAAATTTTTATTCTCCGTGTATACTTATGCAGGTTACAGAGGCCTTGAGGAAAGAAGGTTTGGAATCATCAAA TCTCATCCTTGGAATTGATTTCACAAAGAGCAATGAATGGACTGGTAAGTGGCAGTACATGAATCCATTATTGAGAGCTA AAATTGGCTAAAGATGATTTCTGGTTTGACACTAAATTATGGATTTTGGTTATAATTTCTTTTTGCAATGATTTCTTTCG GATTTTTCGCCTAAGAATCCAATTCATCCATTTTTTATTGTAGGCAAAACATCATTCAATAATAGAAGCCTGCATGCTAT TGGAGATACACCTAACCCTTATGAGAAGGCCATCTCAATAATTGGCAAGACAATGGCTCCCTTTGATGATGACAACTTGA TTCCATGCTTTGGCTTTGGTGATGGTAAGGCCTAGTCCTTAAAACAGAACATGTATAAAAGTGAGTTATAGTTTTTCCAA TTGAGCATGTGACTGGACTTTTACCATTGCACAGCTACCACACACGATCAAGAAGTGTTCAGTTTTCACAGTGATCATTC ACCTTGCCATGGCTTTCAAGAAGTTTTGGCTTGCTACCAAAAAATAGTTCCGAACTTGAAACTTTCAGGTCAGTAGTGCC ATATTTTTATTTTGTTCTTATTAGTAATTCAACATGTTGTAACGGCTAGATGAAGTGCATTTTTTAATACACGGTGGCAA ATCATGGCAATGCCAAATTCATGGTGGACAGTCACAAAAACTAAGGGAAGTTGTTTCTGTCTACCGTGATAAGGACTTTA CTTGTGTATCAAGGCTGCTCTTATGTTGACAAACTTTCATGTATTTCTAGTCTTTTCCTTTAGATTCATTTCTGATGTAA TAATTGCATTTTTACTTGAAGGACCAACTTCTTATGCTCCGGTGATTGAAGCTGCAATAGACATAGTTGAGAAAAGTCGT GGCCAATTCCATGTGTTGGTTGTCATTGCAGATGGCCAGGTACATGAAATGTTACCTCTACTTGTATGCATGTTATTCAA ATCTTGTTCTTAATGAATTTGTTTCTTTTAAAGGTTACAAGAAGTGTTGACACAGAAGATGGAGAACTCAGTCCTCAAGA GGAAAAGACAATCAAAGCAATCGTTGATGCAAGGTATATAGCTCATTGATTCTAATAAGTTGAGAACTCAATTCAAAGTC TCTTATGCTTTTCAGACAAATTCGACAAAATAAAAGTGAATCCTCAACTCATCTCCAAAGTTTATGAGGGTCTTTAATCT GTTTTTTGTAGGTCATGTTTGTCTCCTTAATTCTTGATTAAAGACTAATTTGACGGAAAAAGTAACGGTGACGCACTAAA TTGACCTGCAAAAGTAGATTAAGGACTCTTGCTATTTTTTTCAGTTTAAAGTACTACATGAGTATAGGACCATCACAATT AACATGGGGAACAAATTTGGGGATTCATTCACAAAATTAACTATTAACATATTCATCTGCTAAAGAACATTTATATCATA TGTTTATTCTTTGTTTCTGGTTTCAGTGCATATCCGCTCGCGATAGTTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGA CATGAGAAAGTTTGATGACAAGATACCGGCCCGTGATTATGACAATTTTCAGGTTTGGCAATAATACCTAGCAAATTAAG AGGCATACATGCATTCTTTTCCATCATTTGGTCTATTTGATTTGAAGCATATTTTCCCTTTTGTGCAGTTTGTTAATTTT ACAGACATCATGTCTAAAAACACAAGCCCCTCAGAGAAAGAAACAGCTTTTGCTCTGGCTGCTCTCATGGAGATCCCCTT CCAATATAAAGCAACCATGGAATTTGGAATACTTGGGTATTTATGATCCTCATCATACATTAGCCTAAGTTTTGTATGCA AAAAAATGAAGGGAGCTATAATATTCTTTTGATTCATTATTCTGGTCACAACTTTCGTTTAAACAAGGTAGTTTTCTTTT TAAGTGAGAATTTGCTGGATGATGATTAAAATCATATTTGTTACAGTTTCTTTATCTGTTAAAATCAATTCTCCTGCGTA GAAGCTACTCATATAAGCTTATCTCAGAATTGAATTTGGCTTAGTCATGATTTCAGAACTCGTTTCCAAACATGCAATAA ATTTTCTTCTTCTTCTCTGCCTTTGCATTACAGGCGTGTAACAGGAAGAGCAAAGAGAATAGTACCAAGACCTCCACCTG TTCCTTATTCTCGGCCTGCACCACCACCACTACCTCGTGTACCAAGCAACATACCAGCATCTACACCAGAAGAACAAAAC CAAGCTGTATGTATAACTTAGAGTGCTTCAATATATTATATTCTCTATTAGACTGCTTCCTATGTCTGGAAATCCTTCTA CAATTGAATTTGATTTTTTGATTACAAGTAAAGAGCAAGTTTTGCCTTTTCTGTCATCTTTGAAGTTGATTGATGATTTA TTCAATAAATATGCAGGCTTGCCCTGTTTGTCTGACCAATGGAAGAGATTTGGCATTTGGATGTGGGCACATGGTAAGCT AGCCTCATTTACTCATTGTAAATAATCAAAGAATCCCCAAAGATATAACAGTTTATACTCATATTAGTTCCTGGTAAAAG ATTGAATCCCACATTGATGACCTTAAGTATTTTTAGATCTAAGTATACTCACATCTAGCCTATAACATAACCTTTTGAGC CTGTTTGCTTCCAAACTGATAGGTGGTATCATAGTCCAAACACAGCCCAAGGTCCAAAGAAAAAAGAGCGAAAAAATCAC ATAAAAAAGACAAAAAAAATAGCTCAATAGAAAAATACTACCACTAATATGATAAGTCATGAGCATTTGAAACTCAAGGA TAAGACGACGCACCATAGGTCCATCGATGAATTTTGAGGTTCCACTTGAATTTAAATCCTAACAAGAGCAAGTCTAACAA GAGAGTGTTAGAAGACCAAGTCGCACATCGGTGGACTCAAGAACTAAATCATAGTAAGCCAGAGTGTTTGACCAAAAAAA GAAACTAGAGTATGGTAAGTTCATAGAATCTTAAGACATTTTCAGACCAACCTCACATCTAGCCCATCAACTCACCCCAA TTTAGAGCAATATTTTGGGTCTGTTTTTCCAAGTTAAATAGTTCCTAAATGTTAAGATTATGTTAAGTCCAATAGGTGTT TTGTAAGTCAAGTTAATATTTACTACATTAAGTATTTTTATTTAATTTGACTCATGAAATGCACATGTAGAAATTTATTC GACGGACAGAATATTTAGCATAATTTCTATTGTTTAACGACTCTAGAACTAATTAGAGTATCTGCTTATTTTTTTTGTCA AAGAGTATTATCTTTTCATTTTTCAATCTCTTGTTGGTTTTTAACTATTTTTAACTTTTAAAATTATTTTGGAACTCAGA CTTGCAGAGACTGTGGATCCAGATTAACTAGTTGTCCCATATGTCGCCAGAGGATCACCAGTCGTCTTAGAGTGTACAGT GGGTGATTGTAGAATGAAAAACTATGCACATTACATGGTTTGCATCAAATACTTCTTCTCTTTAGTGTTCATCGTGTTGC TTAAGAGTTTTAGAATTGGACATGGATTTGTTGTAAAAAAGATGGCTTGTGTAATTTGTTTGAATATTTTAAGAGTGTTG AAAAGTGGAGATGAATTTGTACATGTTTTTATGTATTTGGCTCATGTCATTGATGCGTTTGAAGTTGTATATTAGATGGA TTTTGAATCGGATTGTAATCGCGGGAAGAACAGTTCATTAATCCATTTATAATGAATTAAAATTGTTTTGAAAAATTCAA TCCATCTATGTCTTGTTCACAGCCACTCGGTTCACCCACATCCTGGTTGGCCTAAAAGCCTCACAGAACGTGAATGCCAA GCTGGTCGGCTAGGACGATCAAGACAATATCTTCAATCGTCCAAACAACTAGTTAAACAGATGACTAAGTAGTTGGAGTT AATGATGCGAGACCATTAAAACAAGACTAAATACTTTGAAAGCCAGCTACATAACAACCTAAGTA
CDS sequence (LotjaGi3g1v0131800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAACCTCTTTGGTAGAAATAAAAAGCATAACCCTCAATTTTCTAGATTTGATAGAGGAAGAGAGGGAAGAATCTC CTCCTCCGTAAGTGGCAGACCCTTAAGATCACCTTTTCCAACTGAGCTACCCCGGCCACCTCCACCACCGCCACCACTAC CGCAAGCGCCACGACTAGCCGTACCACAATCTAAGAAACCAGCTGGTTATTGGACAGGTAATTCTGAAGAAAGTTCAGTA GCCATGAACAGCAAGAGCAAGCAATCTGCCAAGAAATATGCTCTGATTCGTGATAACTTCAACACCCTTGAGCAGGTTAC AGAGGCCTTGAGGAAAGAAGGTTTGGAATCATCAAATCTCATCCTTGGAATTGATTTCACAAAGAGCAATGAATGGACTG GCAAAACATCATTCAATAATAGAAGCCTGCATGCTATTGGAGATACACCTAACCCTTATGAGAAGGCCATCTCAATAATT GGCAAGACAATGGCTCCCTTTGATGATGACAACTTGATTCCATGCTTTGGCTTTGGTGATGCTACCACACACGATCAAGA AGTGTTCAGTTTTCACAGTGATCATTCACCTTGCCATGGCTTTCAAGAAGTTTTGGCTTGCTACCAAAAAATAGTTCCGA ACTTGAAACTTTCAGGACCAACTTCTTATGCTCCGGTGATTGAAGCTGCAATAGACATAGTTGAGAAAAGTCGTGGCCAA TTCCATGTGTTGGTTGTCATTGCAGATGGCCAGGTTACAAGAAGTGTTGACACAGAAGATGGAGAACTCAGTCCTCAAGA GGAAAAGACAATCAAAGCAATCGTTGATGCAAGTGCATATCCGCTCGCGATAGTTCTGGTTGGAGTTGGTGATGGACCTT GGGAAGACATGAGAAAGTTTGATGACAAGATACCGGCCCGTGATTATGACAATTTTCAGTTTGTTAATTTTACAGACATC ATGTCTAAAAACACAAGCCCCTCAGAGAAAGAAACAGCTTTTGCTCTGGCTGCTCTCATGGAGATCCCCTTCCAATATAA AGCAACCATGGAATTTGGAATACTTGGGCGTGTAACAGGAAGAGCAAAGAGAATAGTACCAAGACCTCCACCTGTTCCTT ATTCTCGGCCTGCACCACCACCACTACCTCGTGTACCAAGCAACATACCAGCATCTACACCAGAAGAACAAAACCAAGCT GCTTGCCCTGTTTGTCTGACCAATGGAAGAGATTTGGCATTTGGATGTGGGCACATGACTTGCAGAGACTGTGGATCCAG ATTAACTAGTTGTCCCATATGTCGCCAGAGGATCACCAGTCGTCTTAGAGTGTACAGTGGGTGA
Protein sequence (LotjaGi3g1v0131800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNLFGRNKKHNPQFSRFDRGREGRISSSVSGRPLRSPFPTELPRPPPPPPPLPQAPRLAVPQSKKPAGYWTGNSEESSV AMNSKSKQSAKKYALIRDNFNTLEQVTEALRKEGLESSNLILGIDFTKSNEWTGKTSFNNRSLHAIGDTPNPYEKAISII GKTMAPFDDDNLIPCFGFGDATTHDQEVFSFHSDHSPCHGFQEVLACYQKIVPNLKLSGPTSYAPVIEAAIDIVEKSRGQ FHVLVVIADGQVTRSVDTEDGELSPQEEKTIKAIVDASAYPLAIVLVGVGDGPWEDMRKFDDKIPARDYDNFQFVNFTDI MSKNTSPSEKETAFALAALMEIPFQYKATMEFGILGRVTGRAKRIVPRPPPVPYSRPAPPPLPRVPSNIPASTPEEQNQA ACPVCLTNGRDLAFGCGHMTCRDCGSRLTSCPICRQRITSRLRVYSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 84 | 84 | - | – | |
| MobiDBLite | 12 | 26 | 15 | - | – | |
| MobiDBLite | 39 | 58 | 20 | - | – | |
| MobiDBLite | 68 | 84 | 17 | - | – | |
| PANTHER | 77 | 446 | 370 | 3.3E-212 | – | |
| PANTHER | 77 | 446 | 370 | 3.3E-212 | – | |
| SMART | 117 | 320 | 204 | 6.1E-8 | ||
| SUPERFAMILY | 118 | 301 | 184 | 9.34E-12 | ||
| Pfam | 142 | 354 | 213 | 3.4E-74 | ||
| Gene3D | 168 | 328 | 161 | 5.0E-5 | ||
| MobiDBLite | 367 | 394 | 28 | - | – | |
| MobiDBLite | 367 | 388 | 22 | - | – | |
| Gene3D | 387 | 447 | 61 | 4.0E-14 | ||
| SUPERFAMILY | 397 | 442 | 46 | 1.7E-6 | – | |
| Pfam | 400 | 440 | 41 | 2.7E-9 | – | |
| CDD | 402 | 445 | 44 | 2.84016E-21 | – | |
| SMART | 402 | 434 | 33 | 0.0038 | ||
| ProSiteProfiles | 402 | 435 | 34 | 11.132 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0131800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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