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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0140400 |
| Transcript ID | LotjaGi3g1v0140400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G20230.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230; TrEMBL-Plants: tr|K7MDX1|K7MDX1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0140400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:18566816..18569900) extracted from Lotus japonicus Gifu genome v1.2.
AAGGGGGAAGGCATTCGGGTACGCACTATTTTAAAATAACAATAATAATAAGGGGGAAGGCATTCATGCACCCGCCCCGA AGGTATAATCCGAATACAAAATGGATCCAACGGTCTCGAGTCTTGACTTCACTGCACTGCTTATGAACTTGGATTTGCCA CCATTCTTCCTCACTCACACACACACACTCTCCTCTTCATCTCGACGCTGATACTCCACCATCATCATTCATCACTGCCC TGAAGCAAAGGTGGCTCCCTCTGTACCCACCAACATCCCACCTCACCTGGCTCTCAGGCTCCTCAAGACAGCCTTAAATG TAGGTGATTTCAAGCGTGCCCACCAACTGTTTGACAATATTCCTCAACCAGACCCAACCACTTGTTCAACTTTGATTTCA TCTCTCACCACTCATGGACTTCCCAATGAGGCCCTCAGGCTCTATGCTTCGCTGCGGGCACGCGGGATCAAACCGAACAA ACCGGTCATCTTGGCTGCCACCAAGGCCTGTGCTGCCTCTGGTGATGCCTTGAGAACCAAGGAAGTTCATGATGATGCCG TTCGATGTGGGATGACGTCTGATGTCTTCTTGAGCAATGCACTGATTCATGCCTATGGTAAATGTAAATGCATCGAGGGC GCGAGGCGTGTGTTTGATGATTTGGTTGGCAGAGATGTGGTTTCTTGGACCTCGTTGTCGTCATGCTATGTTAACTGTGG ATTGCCCCGGCAAGGCCTGGCTATTTTTCATGAAATGGGATGGAATGGGGTGAAACCGAATGCAGTAACAGTATCTAGCA TCTTGCCTGCGTGCTCAGAATTGAAAGATTTGAACTCAGGTAAGGCGATTCATGGATTTGCAGTGAGACATGGGATGGTA GAAAATGTTTTTGTTTGCAGCGCACTCGTGAGCATGTATGCAAGATGTTTAAGTGTAAAAGAAGCTCGAGCGGTGTTTGA TTTGATGCCTCATCGAGATGCTGTGTCTTGGAATGGAGTTTTAACAGCATATTTCACAAACAAAGAATATGAGAAGGGTC TTGCTTTGTTTTCCCGGATGAGCAGAGAAGGAGTCAAAGCAGATAAAGCTACATGGAATGCTGTTATTGGCGGATGCATG GAAAATGGGCAAACAGAGGAGTCTTTGGAGATGCTTAGGAAGATGCAAAAGATGGGGTTTAAACCTAATGAGATAACAAT TAGTAGTATTTTACCAGCTTGCTCAATTTTAGAAAGCTTGAGAATGGGCAAGGAGGTACACTGCTATGGCTTAAGACATC GGATTGGGGACTTATCAAGCACAACGGCTCTAGTATATATGTATGCTAAATGCAGTGACTTGAATCTTTCAAGGAATGTC TTTGATATGATGCCCAAAAAGGATGTTGTTGCTTGGAACACAATGATCATTGCAAATGCAATGCATGGGAATGGAAAAGA AGCGCTTTTGCTCTTTGAAAACATGTTAAGGTCAGGGGTCAAGCCCAATTCTGTTACTTTTACTGGTGTTCTGTCTGGTT GTAGTCACTCAAGGTTAGTAGATGAAGGACTTCAAATCTTTAATTCAATGGGTAGGGACCATCTGGTAGAACCTGATGCT AATCATTATTCATGTATGGTTGATGTCTTTAGCCGTGCTGGTCGCCTTGATGAAGCATATAAATTTATACAAAGAATGCC TCTGGAACCAACTGCTAGTGCCTGGGGGGCACTGCTTGGTGCCTGTAGAGTTTTTAAGAATGTGGAGCTGGCAAAAATTG CAGCCAAAAAACTATTTGACATTGAGCCTAACAACCCTGGGAACTATGTTTCGTTATTCAACATCCTTGTCAGTGCCAAA TTGTGGAGTGAAGCTTCACAAATCAGAATATTAATGAAAGATAGGGGAATTACAAAAACTCCAGGCTGTAGTTGGCTTCA AGTGGGAAATAGAGTTCATACTTTTGTTGTTGGAGACAGAAGTAACACGGGAAGTGATAAAATCTACGAGTTCTTGGATG AGTTGGGCCAGAAAATGAAATTGGCTGGATATAAGCCTGACACTGATTATGTTCTGCAAGATGTGGATCAAGAGGAAAAA GCTGAGAGTCTTTGCAACCACAGTGAGAAGCTGGCTGTTGCCTTTGGGATACTTAATTTGAATGGACAATCATCTATACG GGTTTTTAAGAATTTGAGAATATGTGGTGACTGTCACAATGCAATTAAGTATATGTCCAATGTTGTTGGTGTGACAATTA TTGTAAGAGACTCCTTGAGGTTTCATCACTTCAAAAATGGAAATTGTTCTTGTCAAGACTTATGGTGATTATATAATCAG GTTATTAAGATTAAGTGGTGATAGATCCTATTCCTATCTGAATCTGTCTTACCCAAATTTCAGTAGATTGAGTTTTATGC TGTATAAACAATTGGAAAGTACAATTCCTTTGATTTTGGGGAGTTGGAGTCATTAACAATAACATTGTTGGGTTTGAGCT TTGAAATCCTTTTAGATCCAAAAGCATGTCTCTGTAGGCTGCAACACTCAAACAGGTTTGGATCATGTACAGGTCTTCCT GTTTTGATTTGTAGAAGAAAACTTAACTAGATTCAAAGAAATGAAGCCCTCAAAGGATGGATGGAGGAAGATTTCAACAG AATAAAAAACCATGGTTTTTGGCTGCTATTACATCAGTAACTGCTGACTTATTGTGCTTCTGTCATTGGAAACAGAACAA ATTAATTTTTACTCTTCTACAATTGACTCAGTGCTGGAAAGATCGAGAAATTTTGCATGAGTGGCTTGAATAAGATAACT CTAAAGTGATCAAGGAAGTATTTATCTACTCTTGACTTGATTTGAAGTATAAAATATTGGGATGATTACAATTTTTCTTA CTTCAGGGGAGTTTTTTCCTAGTTATTCTCAGGAATTTGTGACAGAAATATGCTGGATGAGTAGGCTGTACGAATAGAAT AGAATGTATTCATGTAAGTTAATCTTAACTTTTTTTTGTTTGAAAATTTTCATTGTACTTACCTTTGTATTTCTACCATG AAATATGGCAAGCAAGAAATCATTTTGTGTAAAGATCGTGTAAAC
CDS sequence (LotjaGi3g1v0140400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGTCTGATGTCTTCTTGAGCAATGCACTGATTCATGCCTATGGTAAATGTAAATGCATCGAGGGCGCGAGGCGTGT GTTTGATGATTTGGTTGGCAGAGATGTGGTTTCTTGGACCTCGTTGTCGTCATGCTATGTTAACTGTGGATTGCCCCGGC AAGGCCTGGCTATTTTTCATGAAATGGGATGGAATGGGGTGAAACCGAATGCAGTAACAGTATCTAGCATCTTGCCTGCG TGCTCAGAATTGAAAGATTTGAACTCAGGTAAGGCGATTCATGGATTTGCAGTGAGACATGGGATGGTAGAAAATGTTTT TGTTTGCAGCGCACTCGTGAGCATGTATGCAAGATGTTTAAGTGTAAAAGAAGCTCGAGCGGTGTTTGATTTGATGCCTC ATCGAGATGCTGTGTCTTGGAATGGAGTTTTAACAGCATATTTCACAAACAAAGAATATGAGAAGGGTCTTGCTTTGTTT TCCCGGATGAGCAGAGAAGGAGTCAAAGCAGATAAAGCTACATGGAATGCTGTTATTGGCGGATGCATGGAAAATGGGCA AACAGAGGAGTCTTTGGAGATGCTTAGGAAGATGCAAAAGATGGGGTTTAAACCTAATGAGATAACAATTAGTAGTATTT TACCAGCTTGCTCAATTTTAGAAAGCTTGAGAATGGGCAAGGAGGTACACTGCTATGGCTTAAGACATCGGATTGGGGAC TTATCAAGCACAACGGCTCTAGTATATATGTATGCTAAATGCAGTGACTTGAATCTTTCAAGGAATGTCTTTGATATGAT GCCCAAAAAGGATGTTGTTGCTTGGAACACAATGATCATTGCAAATGCAATGCATGGGAATGGAAAAGAAGCGCTTTTGC TCTTTGAAAACATGTTAAGGTCAGGGGTCAAGCCCAATTCTGTTACTTTTACTGGTGTTCTGTCTGGTTGTAGTCACTCA AGGTTAGTAGATGAAGGACTTCAAATCTTTAATTCAATGGGTAGGGACCATCTGGTAGAACCTGATGCTAATCATTATTC ATGTATGGTTGATGTCTTTAGCCGTGCTGGTCGCCTTGATGAAGCATATAAATTTATACAAAGAATGCCTCTGGAACCAA CTGCTAGTGCCTGGGGGGCACTGCTTGGTGCCTGTAGAGTTTTTAAGAATGTGGAGCTGGCAAAAATTGCAGCCAAAAAA CTATTTGACATTGAGCCTAACAACCCTGGGAACTATGTTTCGTTATTCAACATCCTTGTCAGTGCCAAATTGTGGAGTGA AGCTTCACAAATCAGAATATTAATGAAAGATAGGGGAATTACAAAAACTCCAGGCTGTAGTTGGCTTCAAGTGGGAAATA GAGTTCATACTTTTGTTGTTGGAGACAGAAGTAACACGGGAAGTGATAAAATCTACGAGTTCTTGGATGAGTTGGGCCAG AAAATGAAATTGGCTGGATATAAGCCTGACACTGATTATGTTCTGCAAGATGTGGATCAAGAGGAAAAAGCTGAGAGTCT TTGCAACCACAGTGAGAAGCTGGCTGTTGCCTTTGGGATACTTAATTTGAATGGACAATCATCTATACGGGTTTTTAAGA ATTTGAGAATATGTGGTGACTGTCACAATGCAATTAAGTATATGTCCAATGTTGTTGGTGTGACAATTATTGTAAGAGAC TCCTTGAGGTTTCATCACTTCAAAAATGGAAATTGTTCTTGTCAAGACTTATGGTGA
Protein sequence (LotjaGi3g1v0140400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSDVFLSNALIHAYGKCKCIEGARRVFDDLVGRDVVSWTSLSSCYVNCGLPRQGLAIFHEMGWNGVKPNAVTVSSILPA CSELKDLNSGKAIHGFAVRHGMVENVFVCSALVSMYARCLSVKEARAVFDLMPHRDAVSWNGVLTAYFTNKEYEKGLALF SRMSREGVKADKATWNAVIGGCMENGQTEESLEMLRKMQKMGFKPNEITISSILPACSILESLRMGKEVHCYGLRHRIGD LSSTTALVYMYAKCSDLNLSRNVFDMMPKKDVVAWNTMIIANAMHGNGKEALLLFENMLRSGVKPNSVTFTGVLSGCSHS RLVDEGLQIFNSMGRDHLVEPDANHYSCMVDVFSRAGRLDEAYKFIQRMPLEPTASAWGALLGACRVFKNVELAKIAAKK LFDIEPNNPGNYVSLFNILVSAKLWSEASQIRILMKDRGITKTPGCSWLQVGNRVHTFVVGDRSNTGSDKIYEFLDELGQ KMKLAGYKPDTDYVLQDVDQEEKAESLCNHSEKLAVAFGILNLNGQSSIRVFKNLRICGDCHNAIKYMSNVVGVTIIVRD SLRFHHFKNGNCSCQDLW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 88 | 88 | 5.2E-19 | ||
| ProSiteProfiles | 4 | 34 | 31 | 7.969 | ||
| PANTHER | 7 | 91 | 85 | 1.8E-105 | – | |
| TIGRFAM | 9 | 37 | 29 | 4.9E-4 | ||
| Pfam | 9 | 35 | 27 | 0.0042 | ||
| ProSiteProfiles | 35 | 69 | 35 | 10.72 | ||
| Pfam | 37 | 67 | 31 | 5.5E-4 | ||
| ProSiteProfiles | 70 | 104 | 35 | 5.952 | ||
| PANTHER | 89 | 174 | 86 | 1.8E-105 | – | |
| Gene3D | 89 | 228 | 140 | 1.5E-31 | ||
| ProSiteProfiles | 105 | 135 | 31 | 7.662 | ||
| Pfam | 108 | 134 | 27 | 0.16 | ||
| ProSiteProfiles | 136 | 170 | 35 | 10.479 | ||
| TIGRFAM | 138 | 171 | 34 | 1.0E-5 | ||
| Pfam | 138 | 168 | 31 | 7.5E-4 | ||
| ProSiteProfiles | 171 | 205 | 35 | 12.934 | ||
| Pfam | 172 | 217 | 46 | 1.3E-10 | ||
| PANTHER | 174 | 218 | 45 | 1.8E-105 | – | |
| TIGRFAM | 174 | 207 | 34 | 3.6E-9 | ||
| PANTHER | 222 | 436 | 215 | 1.8E-105 | – | |
| SUPERFAMILY | 234 | 429 | 196 | 2.58E-5 | ||
| ProSiteProfiles | 240 | 270 | 31 | 6.84 | ||
| Gene3D | 242 | 457 | 216 | 1.3E-38 | ||
| Pfam | 270 | 318 | 49 | 2.3E-12 | ||
| ProSiteProfiles | 271 | 305 | 35 | 11.455 | ||
| TIGRFAM | 273 | 307 | 35 | 3.8E-5 | ||
| ProSiteProfiles | 306 | 340 | 35 | 8.824 | ||
| TIGRFAM | 308 | 342 | 35 | 4.4E-4 | ||
| Pfam | 339 | 369 | 31 | 1.1E-5 | ||
| ProSiteProfiles | 342 | 372 | 31 | 8.955 | ||
| TIGRFAM | 346 | 369 | 24 | 8.2E-4 | ||
| ProSiteProfiles | 408 | 442 | 35 | 7.267 | ||
| Pfam | 444 | 568 | 125 | 6.1E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0140400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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