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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0143000 |
| Transcript ID | LotjaGi3g1v0143000.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G48810.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810; TrEMBL-Plants: tr|A0A1J7G482|A0A1J7G482_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0143000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:18980133..18984882) extracted from Lotus japonicus Gifu genome v1.2.
CACTCTGCCTCCATCTCCCAGTCTCTCTTCAATCTCACTCCCCTGCCTAGCCAAATCGAAACCCTAATCCCCAAATTCAC ATTGAAGGTTCAATTTTTGCTTATTTTTTGGATCTTGCATTCGCATTTGTGTTTGGCTCACCCTTTTGATCGAAGATTGA ATTCACCTCAGCTTCTTCAGTATAAAGTTTCAAAATTTAATCTTCATTGGAAGATAATCATGTATTTAAGAGATGGGTGT TCGTTATTGTTGAAATTGCGCAAGCCTTCAATCCCATTTGTGCTCAACACCAACCCAATTTTCAATTTTGAGAAACCCCA GATGCAAAATTCTCCTGTTCCAGAGTCTCAGGTGGTGAAAGTGTTGAAACATGAGCAAGATATTGTGTTAGCACTTGAAT ATTTCAAATCTGTGGCCAATTTTGGAGCATTCAAACACACTCATTTGACATACCATGTTATGATTGAGAAGCTTGGAAGG AGCTCTGAAATTGATGGGGTTCAATATCTTTTGCAACAGATGAAGTTGGAAGAGATAGCTTGCTCTGAAGAGTTGTTTAT AGTTGTGATGAATTCATATAGGAGAGCTGGGTTGGCTGATCAAGCTTTGAAGATGTTTTATAGGATCAGGGAGTTTGGGT GTAAGCCTACAGTGAAGATATACAATCACCTTTTGGATGCCTTGCTTGGTGAGAACAGGTTTCAGATGATTAGTCCTGTT TATAACAACTTGAAGGGGGAAGGGTTGGAGCCAAATGTGTTTACATATAACATTCTTCTCAAGGCTCTGTGTAAGAATGG AAAGGTGGACGGTGCGCGCAAGTTGCTTGAAGAAATGCCGAATAAGGGTTGTACTCCGGATGATGTGAGCTACACGACGA TAATATCTTCCATGTGTAAATTTGGTCAAGTGGAGAAAGCAAAGGAGATAGCTATGAGGTTTACACCTGTAGTGCCTGTT TATAATGCTTTGATCAATGGATTATGTAAAGAGTGCAAGGTTAAGGAGGCATTTGATTTGATGAATGATATGGTGGGTAA GGGTGTTGACCCTAATGTTGTCAGTTACTCTACTATTATTAGTTGCCTTTCTGATATGGGGAACATTGACTTGTCTCTTG CAGTTTTTGCCCAAATGCTTATGAGAGGATGCAGCCCCAATATTCATACATTTTCTTCCTTGATAAAAGGTCATTTCTTG GGAGGGAGACCCGGTGATGCTCTTGGCTTGTGGAATATTATGATTCGGGAGGGAGTTAAGCCCAATGTTGTCTCATACAA CACTCTCATATATGGTTTTTGCTCCAATGGGAGTATGACTGAGGCAATATCTATTTGGAATCAGATGGAGAAAAATTTTT GCCATCCAAATGTGACCACATATAGCACTCTTATAAATGGGCTTGCGAAATCAGGGAACTTGTTCGGTGCTTTGGATATA TGGAACAAGATGATTAATTGTGGCTGCTGTCCTAATGTTGTGGCATACACCTGCATGGTGGATGTCCTTTGTCAGATGTC AATGTTTGACCAAGCTTATCGTCTTATTGATAATATGGCTTCTGAGGGTTGTCCTCCAACTGTTGTTACATTTAACACAT TTATCAAAGGCTTGTGTGGTGGTGGAAGAGTTCAATGGGCAATGCATGTGCTTGATCAGATGGAGAAATATGAGTGTGTG CCTAATATCAGAACATATAATGAATTGTTGGATGGTTTGTTTAGAATGAACAGATTGGGAGAAGCTTGTGGACTTATAAG GGAGATGGAAGAAAGGAAAGTGGGGCTAAATTCTGTCACTTACAACACTCTCATGAATGGATTTTCTTGTCTTGGGATGC AAGAAAGGGTTTTGCAGCTTTTGGGGAAAATGACAGTAAATGGAGTAAAGCCTGATGCCATTACAGTTAATATAATTATT ACCGTATACTGTAAGTTGGGTAAGGTTAGAACTGCGATCCAGCTTCTTGATACAATTACTGCAGGAAAGGAATTGTGTCC AGATATAATAGTGCATACTAGTCTTTTGTGGGGCATCTGTAATTGGTTAGGCATTGAAGAGGCAATTCTGCATCTTCAGA AAATGTTAAGCAGAGGAATCTTTCCCAATTTTATCACTTGGAATGTGTTAGTTCGAGGCTTCTTTAACAGCTTGGGTCAT ATGGGACCAATCCGCATCTTGGATGATATTTTAGGAAAGGGATAGTATGCAATTTCAAACGTCCTGAAAGGTAGCTCTGT GCGAGAAAACCAGCTTTTTGAGCCAAACCAAAAACTGGTTCAGGACTCCAGGTACAGTTTTTTTTTTATCCAAACCTAAT CTTCTTCCCCTAGTTGACTCACCCATGAAAACACTTCACCTTTGTCTCTCCAGGCTCCCTTAAATAGCTGAATTGCAACT ATATAATCCCAAATTGTGAGACTCAAATTCTAATTCATTCATTCTCTCAATTCGAACCTAGTCTTGGCTCGCCCTCTCAA TCACAAACCTAATTGCGACTTGTTCTTTGTGAATCTCTCAGACTCTCTGTTCATCTTAATCTTGGTCAAAAGACTGTGAG GAACCATTGTCTTCACTGTGTTCATGAATCTTCATGTTAGCTTGTGAATCGCGATTCTATGTTCGCAAAGCTGTGACTCA TATTTCATCTTTCACTAGTCTAAACACAGCTCTCTTCGAAGCTTCAACAACTTTCTTTGTGTTGAGACCACGTTCTATTT TGAGACCAAGATTGATTTCTGGGTTTGCTTTGTTACTCTCTCTACTTTTATTGTTATTTGGGTTTTCTCCGATCTTGGGA ATAGAACGTTACCTGTAACCGCTGCTTTTGTGTCCATGCAGGTAGAGTGCATTGCTCATTCTGTTTGATTTCGCGTGCTC GGTTGCTCCTGTTGTTTCATATTGAAGGTTTGATTTGTTTATTTTTTGGATCTTGTATACTGATTTATGTATTGCTCCAT TCATTTTCCAGGATAGGAAAACATCTTGCTTTTGTTGGTTATATTGTTTCTGATGCTCATGTGGCATTGTGAACTGAATT CTAATATTCAGGTTCAAATATTAAACCATTTTTGAGGAGAAAATGAAGTGCATTAGCACACTGAAGTAACCATTGACATA ATTCAGTTGATTATATGGAGTTTACCCTGCTGGAATTAAAAAGAAACCACTAATGCATGAACTCAGCATCATATTCTTCC TTCAAGTGAATTTTGTGATTCTTTATTTCTTTTGTGAAGAATTTCAACCCACATATGGCTTGCCAAAGTGGATACTTATT TTAAAACATTGCTACTGAATGCAAGTATGTGACATCTTCTTAAAAAGGGTGATCAATATGTGCATTTTAAAAGGTTTATG AAGTTTGTATGATTATTGATGGTAAAAATGATAGTACAACAGTTCAATAACTTGTTTAGAAAACAATTCAATAGAACACA AACTTACATTTGCCCCGACAGACAGTTTTTCCTTCTCTGTTTTCACCTTTGGAATTCATTAATGTACATTTGCATTGATG CAACAGTTTTTCAGACATGCTTTAACTTGTTTAAAGTTTAAACAAACCAACAATAAATGTTTACCAAACTTGGCATTGTT CTTGAGTTTTACTGTGGCGTTTCCATGCTTTTGCAGCTTTGCACCATACTGTGATCTATTCACATCCTGCTTCAGAGTAA TGTAAATCTTATTTTTCATATAGATGTACTGTTGGTCATGTATAGTCATCTGCGCATGTTAGGTACTCTGTTTGTTGTAT TTCGTTCTTCAATTAGAGTTACCAGCTTGATTAACAGATCCACAAATAATTTGGCTGACTGAGCATCTATGTTGTAGGTT AATGCTCCAAAGAAAAAGGTTTGAAAGCAAACAATCCTGTAGAAGCATTAGTTTATGGAACAATGGCACCTGTGGATGTC CAGAAAGCTTTAGAGGAATTATTTTGAAATTTCTTTGCTAGATAGTGTGATGGAAGATACAGAAGACAAGAAAAACATAG TTAAGTCTTGTGTTAATGGCATGAGAAACAAGGTCAGTTTTTCCTCATAATATAAGAACTCCATATTTCTTAAAAGTTAA CTGAGTGATAGCTAATCCTGCCTTAACTGGACAAGAGTACAGGATTGGCATATTTTGTAAGTCCTGCTGCTACTTCGACA GTCTTGTGTTTGGATGGTCACCATGAAAATTGAAAACAGTGGAGTATCCCATGCCTTCGAACCTCACACTCCTCCACCCC AACAAGATCTCGCATAGGCCTTCTCTCTGGCCAAGCAAGAAGCCCCACTACGACAAAGACCTCTCTCGCGTGGACCACTA GGACAAATGCCCGGTCCCGGTGCCCTCTCTGGAATTGTGCTTCCGCTAGGAACGAAGTCGCCCCAGATATGAGACATCGA GAAGGAAGTCAATGACACCCAGCTCATTGTGCAAGCTACAGATTCTCAGGGTGTGACTCTCACAGTGAATGCTTTAAGAT TAGGTATATATTTTGACTTTTAATTCTTTTTAATCAGCAGTTTGATTGGTTGGGTGATTGAGTTTCATTCCACTGGAAAT TTCTGAGATTACAAAGGAAGGATCTTTGGAATTAACTTTTTCTCCGATTTCTACTGTGTATATATATATATATATATATA TATATATATATATATATATATATATATATATTTGAATTGCAAGTTGCCCAATTTCTCAATCTCTTTGTATGTGATGCATG ATGTAACTTCTTTAGGTTATTTGAAGTCAA
CDS sequence (LotjaGi3g1v0143000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTTAAGAGATGGGTGTTCGTTATTGTTGAAATTGCGCAAGCCTTCAATCCCATTTGTGCTCAACACCAACCCAAT TTTCAATTTTGAGAAACCCCAGATGCAAAATTCTCCTGTTCCAGAGTCTCAGGTGGTGAAAGTGTTGAAACATGAGCAAG ATATTGTGTTAGCACTTGAATATTTCAAATCTGTGGCCAATTTTGGAGCATTCAAACACACTCATTTGACATACCATGTT ATGATTGAGAAGCTTGGAAGGAGCTCTGAAATTGATGGGGTTCAATATCTTTTGCAACAGATGAAGTTGGAAGAGATAGC TTGCTCTGAAGAGTTGTTTATAGTTGTGATGAATTCATATAGGAGAGCTGGGTTGGCTGATCAAGCTTTGAAGATGTTTT ATAGGATCAGGGAGTTTGGGTGTAAGCCTACAGTGAAGATATACAATCACCTTTTGGATGCCTTGCTTGGTGAGAACAGG TTTCAGATGATTAGTCCTGTTTATAACAACTTGAAGGGGGAAGGGTTGGAGCCAAATGTGTTTACATATAACATTCTTCT CAAGGCTCTGTGTAAGAATGGAAAGGTGGACGGTGCGCGCAAGTTGCTTGAAGAAATGCCGAATAAGGGTTGTACTCCGG ATGATGTGAGCTACACGACGATAATATCTTCCATGTGTAAATTTGGTCAAGTGGAGAAAGCAAAGGAGATAGCTATGAGG TTTACACCTGTAGTGCCTGTTTATAATGCTTTGATCAATGGATTATGTAAAGAGTGCAAGGTTAAGGAGGCATTTGATTT GATGAATGATATGGTGGGTAAGGGTGTTGACCCTAATGTTGTCAGTTACTCTACTATTATTAGTTGCCTTTCTGATATGG GGAACATTGACTTGTCTCTTGCAGTTTTTGCCCAAATGCTTATGAGAGGATGCAGCCCCAATATTCATACATTTTCTTCC TTGATAAAAGGTCATTTCTTGGGAGGGAGACCCGGTGATGCTCTTGGCTTGTGGAATATTATGATTCGGGAGGGAGTTAA GCCCAATGTTGTCTCATACAACACTCTCATATATGGTTTTTGCTCCAATGGGAGTATGACTGAGGCAATATCTATTTGGA ATCAGATGGAGAAAAATTTTTGCCATCCAAATGTGACCACATATAGCACTCTTATAAATGGGCTTGCGAAATCAGGGAAC TTGTTCGGTGCTTTGGATATATGGAACAAGATGATTAATTGTGGCTGCTGTCCTAATGTTGTGGCATACACCTGCATGGT GGATGTCCTTTGTCAGATGTCAATGTTTGACCAAGCTTATCGTCTTATTGATAATATGGCTTCTGAGGGTTGTCCTCCAA CTGTTGTTACATTTAACACATTTATCAAAGGCTTGTGTGGTGGTGGAAGAGTTCAATGGGCAATGCATGTGCTTGATCAG ATGGAGAAATATGAGTGTGTGCCTAATATCAGAACATATAATGAATTGTTGGATGGTTTGTTTAGAATGAACAGATTGGG AGAAGCTTGTGGACTTATAAGGGAGATGGAAGAAAGGAAAGTGGGGCTAAATTCTGTCACTTACAACACTCTCATGAATG GATTTTCTTGTCTTGGGATGCAAGAAAGGGTTTTGCAGCTTTTGGGGAAAATGACAGTAAATGGAGTAAAGCCTGATGCC ATTACAGTTAATATAATTATTACCGTATACTGTAAGTTGGGTAAGGTTAGAACTGCGATCCAGCTTCTTGATACAATTAC TGCAGGAAAGGAATTGTGTCCAGATATAATAGTGCATACTAGTCTTTTGTGGGGCATCTGTAATTGGTTAGGCATTGAAG AGGCAATTCTGCATCTTCAGAAAATGTTAAGCAGAGGAATCTTTCCCAATTTTATCACTTGGAATGTGTTAGTTCGAGGC TTCTTTAACAGCTTGGGTCATATGGGACCAATCCGCATCTTGGATGATATTTTAGGAAAGGGATAG
Protein sequence (LotjaGi3g1v0143000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYLRDGCSLLLKLRKPSIPFVLNTNPIFNFEKPQMQNSPVPESQVVKVLKHEQDIVLALEYFKSVANFGAFKHTHLTYHV MIEKLGRSSEIDGVQYLLQQMKLEEIACSEELFIVVMNSYRRAGLADQALKMFYRIREFGCKPTVKIYNHLLDALLGENR FQMISPVYNNLKGEGLEPNVFTYNILLKALCKNGKVDGARKLLEEMPNKGCTPDDVSYTTIISSMCKFGQVEKAKEIAMR FTPVVPVYNALINGLCKECKVKEAFDLMNDMVGKGVDPNVVSYSTIISCLSDMGNIDLSLAVFAQMLMRGCSPNIHTFSS LIKGHFLGGRPGDALGLWNIMIREGVKPNVVSYNTLIYGFCSNGSMTEAISIWNQMEKNFCHPNVTTYSTLINGLAKSGN LFGALDIWNKMINCGCCPNVVAYTCMVDVLCQMSMFDQAYRLIDNMASEGCPPTVVTFNTFIKGLCGGGRVQWAMHVLDQ MEKYECVPNIRTYNELLDGLFRMNRLGEACGLIREMEERKVGLNSVTYNTLMNGFSCLGMQERVLQLLGKMTVNGVKPDA ITVNIIITVYCKLGKVRTAIQLLDTITAGKELCPDIIVHTSLLWGICNWLGIEEAILHLQKMLSRGIFPNFITWNVLVRG FFNSLGHMGPIRILDDILGKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 30 | 161 | 132 | 3.8E-18 | ||
| PANTHER | 43 | 349 | 307 | 9.0E-149 | – | |
| ProSiteProfiles | 74 | 108 | 35 | 6.884 | ||
| Pfam | 97 | 155 | 59 | 2.8E-4 | ||
| ProSiteProfiles | 109 | 143 | 35 | 9.942 | ||
| TIGRFAM | 115 | 145 | 31 | 7.6E-5 | ||
| ProSiteProfiles | 144 | 178 | 35 | 7.815 | ||
| Gene3D | 162 | 239 | 78 | 3.2E-24 | ||
| ProSiteProfiles | 179 | 213 | 35 | 14.59 | ||
| Pfam | 179 | 227 | 49 | 6.8E-18 | ||
| TIGRFAM | 181 | 214 | 34 | 3.0E-11 | ||
| ProSiteProfiles | 214 | 237 | 24 | 6.445 | ||
| TIGRFAM | 216 | 237 | 22 | 0.0017 | ||
| Gene3D | 240 | 327 | 88 | 4.5E-25 | ||
| ProSiteProfiles | 244 | 278 | 35 | 11.312 | ||
| Pfam | 245 | 290 | 46 | 5.0E-16 | ||
| TIGRFAM | 247 | 280 | 34 | 2.1E-9 | ||
| ProSiteProfiles | 279 | 313 | 35 | 11.433 | ||
| TIGRFAM | 281 | 315 | 35 | 9.7E-8 | ||
| ProSiteProfiles | 314 | 348 | 35 | 10.709 | ||
| TIGRFAM | 316 | 350 | 35 | 5.7E-6 | ||
| Pfam | 317 | 346 | 30 | 0.0024 | ||
| Gene3D | 328 | 447 | 120 | 1.4E-35 | ||
| PANTHER | 344 | 494 | 151 | 9.0E-149 | – | |
| Pfam | 348 | 397 | 50 | 5.3E-18 | ||
| ProSiteProfiles | 349 | 383 | 35 | 12.134 | ||
| TIGRFAM | 351 | 385 | 35 | 3.4E-10 | ||
| ProSiteProfiles | 384 | 418 | 35 | 12.003 | ||
| TIGRFAM | 387 | 420 | 34 | 6.7E-10 | ||
| Pfam | 418 | 466 | 49 | 5.0E-15 | ||
| ProSiteProfiles | 419 | 453 | 35 | 11.696 | ||
| TIGRFAM | 421 | 455 | 35 | 7.9E-7 | ||
| Gene3D | 448 | 518 | 71 | 1.2E-20 | ||
| PANTHER | 453 | 641 | 189 | 9.0E-149 | – | |
| ProSiteProfiles | 454 | 488 | 35 | 11.005 | ||
| TIGRFAM | 456 | 490 | 35 | 2.1E-8 | ||
| Pfam | 488 | 535 | 48 | 1.3E-11 | ||
| ProSiteProfiles | 489 | 523 | 35 | 10.063 | ||
| TIGRFAM | 492 | 524 | 33 | 1.8E-5 | ||
| Gene3D | 519 | 656 | 138 | 1.7E-25 | ||
| ProSiteProfiles | 524 | 558 | 35 | 11.279 | ||
| TIGRFAM | 526 | 560 | 35 | 7.4E-6 | ||
| Pfam | 554 | 584 | 31 | 4.4E-8 | ||
| ProSiteProfiles | 559 | 594 | 36 | 7.914 | ||
| ProSiteProfiles | 595 | 629 | 35 | 7.717 | ||
| ProSiteProfiles | 630 | 661 | 32 | 6.237 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0143000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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