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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0147900 |
| Transcript ID | LotjaGi3g1v0147900.3 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyubiquitin; TAIR: AT4G05320.1 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|K3YR52|K3YR52_SETIT Uncharacterized protein; Found in the gene: LotjaGi3g1v0147900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:19910191..19911529) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAGATCTTTGTCAAGACTTTGACTGGGAAAACCATCACCCTTGAGGTCGAATCCTCAGATACCATTGACAATGTGAA GACGAAAATTCAGGACAAAGAGGGTATCCCTCCAGATCAACAGAGGCTTATTTTTGCTGGGAAACAACTTGAAGATGGAA GGACCTTGGCTGATTACAACATCCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGATTGAGAGGTGGCATGCAAATTTTT GTCAAGACCTTGACAGGAAAGACAATAACTTTGGAGGTTGAAAGCTCAGATACTATTGATAATGTGAAATCCAAGATTCA GGACAAGGAGGGCATCCCGCCAGATCAGCAGAGGCTTATTTTTGCTGGGAAACAACTTGAGGATGGAAGGACCTTGGCTG ATTACAACATCCAGAAGGAGTCCACCCTTCATTTGGTGCTGCGACTGAGAGGTGGCATGCAAATTTTTGTCAAGACCTTG ACAGGAAAGACAATTACTTTGGAGGTGGAAAGTTCAGATACTATTGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGG CATCCCGCCAGATCAGCAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAAGATGGTAGAACTCTTGCTGATTATAACATTC AGAAGGAGTCTACTTTGCATTTGGTCTTGCGGCTTCGTGGTGGCATGCAAATTTTTGTGAAAACTTTAACTGGGAAGACG ATCACCTTGGAGGTTGAGAGTTCTGATACCATTGATAATGTGAAAGCAAAAATCCAGGACAAAGAGGGTATCCCACCGGA CCAGCAGAGGCTTATATTTGCTGGGAAGCAGTTGGAAGATGGTAGAACCTTTGCTGATTATAATATCCAGAAGGAATCCA CCCTGCATTTGGTTTTGCGGCTCCGTGGTGGGATGCAGATTTTTGTCAAGACTTTGACAGGGAAGACCATAACTTTGGAG GTTGAGAGCTCTGATACAATTGATAATGTAAAAGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGGCT TATTTTTGCTGGGAAGCAATTGGAAGATGGGCGTACACTGGCGGATTATAACATTCAGAAGGAATCCACTCTTCATCTTG TCCTTCGTCTGCGCGGTTTGAAGTTTATTTGTTACTCTGTTTGTTTCAAGTTGTGGATTGTAGCCCTGTTTAGTGGCTGT TATAATGTTTCAAGTTTGGTGTATGAACCTGCTCCTTAATTTCTAATATTTCATTTGATCAAGTAGTATCCTTGTGTTGT TTGCCTTAGTTATTCGCTAGTTGCCAATTCATTATCTACAGAACTAGAATCTGGTATGA
CDS sequence (LotjaGi3g1v0147900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGATCTTTGTCAAGACTTTGACTGGGAAAACCATCACCCTTGAGGTCGAATCCTCAGATACCATTGACAATGTGAA GACGAAAATTCAGGACAAAGAGGGTATCCCTCCAGATCAACAGAGGCTTATTTTTGCTGGGAAACAACTTGAAGATGGAA GGACCTTGGCTGATTACAACATCCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGATTGAGAGGTGGCATGCAAATTTTT GTCAAGACCTTGACAGGAAAGACAATAACTTTGGAGGTTGAAAGCTCAGATACTATTGATAATGTGAAATCCAAGATTCA GGACAAGGAGGGCATCCCGCCAGATCAGCAGAGGCTTATTTTTGCTGGGAAACAACTTGAGGATGGAAGGACCTTGGCTG ATTACAACATCCAGAAGGAGTCCACCCTTCATTTGGTGCTGCGACTGAGAGGTGGCATGCAAATTTTTGTCAAGACCTTG ACAGGAAAGACAATTACTTTGGAGGTGGAAAGTTCAGATACTATTGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGG CATCCCGCCAGATCAGCAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAAGATGGTAGAACTCTTGCTGATTATAACATTC AGAAGGAGTCTACTTTGCATTTGGTCTTGCGGCTTCGTGGTGGCATGCAAATTTTTGTGAAAACTTTAACTGGGAAGACG ATCACCTTGGAGGTTGAGAGTTCTGATACCATTGATAATGTGAAAGCAAAAATCCAGGACAAAGAGGGTATCCCACCGGA CCAGCAGAGGCTTATATTTGCTGGGAAGCAGTTGGAAGATGGTAGAACCTTTGCTGATTATAATATCCAGAAGGAATCCA CCCTGCATTTGGTTTTGCGGCTCCGTGGTGGGATGCAGATTTTTGTCAAGACTTTGACAGGGAAGACCATAACTTTGGAG GTTGAGAGCTCTGATACAATTGATAATGTAAAAGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGGCT TATTTTTGCTGGGAAGCAATTGGAAGATGGGCGTACACTGGCGGATTATAACATTCAGAAGGAATCCACTCTTCATCTTG TCCTTCGTCTGCGCGTTATTCGCTAG
Protein sequence (LotjaGi3g1v0147900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTL TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTFADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRVIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 72 | 72 | 8.6E-35 | ||
| ProSiteProfiles | 1 | 76 | 76 | 30.365 | ||
| SUPERFAMILY | 1 | 76 | 76 | 2.9E-33 | ||
| Gene3D | 1 | 76 | 76 | 5.0E-45 | – | |
| CDD | 1 | 76 | 76 | 5.51873E-47 | – | |
| PANTHER | 1 | 133 | 133 | 0.0 | – | |
| PANTHER | 1 | 133 | 133 | 0.0 | – | |
| Pfam | 3 | 74 | 72 | 5.2E-33 | ||
| ProSitePatterns | 27 | 52 | 26 | - | ||
| PANTHER | 70 | 206 | 137 | 0.0 | – | |
| PANTHER | 70 | 206 | 137 | 0.0 | – | |
| SUPERFAMILY | 76 | 152 | 77 | 9.95E-34 | ||
| ProSiteProfiles | 77 | 152 | 76 | 30.409 | ||
| SMART | 77 | 148 | 72 | 7.6E-35 | ||
| Gene3D | 77 | 153 | 77 | 2.1E-45 | – | |
| CDD | 77 | 152 | 76 | 3.41053E-47 | – | |
| Pfam | 79 | 150 | 72 | 4.4E-33 | ||
| ProSitePatterns | 103 | 128 | 26 | - | ||
| PANTHER | 123 | 283 | 161 | 0.0 | – | |
| PANTHER | 123 | 283 | 161 | 0.0 | – | |
| SUPERFAMILY | 152 | 228 | 77 | 8.08E-34 | ||
| CDD | 153 | 228 | 76 | 9.75417E-48 | – | |
| ProSiteProfiles | 153 | 228 | 76 | 30.452 | ||
| SMART | 153 | 224 | 72 | 3.0E-35 | ||
| Gene3D | 154 | 228 | 75 | 1.9E-45 | – | |
| Pfam | 155 | 226 | 72 | 1.7E-33 | ||
| PRINTS | 163 | 183 | 21 | 4.5E-38 | ||
| ProSitePatterns | 179 | 204 | 26 | - | ||
| PRINTS | 184 | 204 | 21 | 4.5E-38 | ||
| PANTHER | 196 | 318 | 123 | 0.0 | – | |
| PANTHER | 196 | 318 | 123 | 0.0 | – | |
| PRINTS | 205 | 226 | 22 | 4.5E-38 | ||
| SUPERFAMILY | 228 | 304 | 77 | 4.56E-33 | ||
| CDD | 229 | 304 | 76 | 4.70079E-47 | – | |
| ProSiteProfiles | 229 | 304 | 76 | 29.886 | ||
| Gene3D | 229 | 305 | 77 | 8.2E-45 | – | |
| SMART | 229 | 300 | 72 | 1.4E-33 | ||
| Pfam | 231 | 302 | 72 | 2.0E-32 | ||
| ProSitePatterns | 255 | 280 | 26 | - | ||
| PANTHER | 277 | 378 | 102 | 0.0 | – | |
| PANTHER | 277 | 378 | 102 | 0.0 | – | |
| SUPERFAMILY | 304 | 378 | 75 | 1.89E-32 | ||
| SMART | 305 | 376 | 72 | 3.0E-35 | ||
| CDD | 305 | 378 | 74 | 2.95631E-46 | – | |
| ProSiteProfiles | 305 | 378 | 74 | 28.187 | ||
| Gene3D | 306 | 380 | 75 | 1.7E-43 | – | |
| Pfam | 307 | 378 | 72 | 1.7E-33 | ||
| ProSitePatterns | 331 | 356 | 26 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0147900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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