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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0148400 |
| Transcript ID | LotjaGi3g1v0148400.7 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|M7Z4Q9|M7Z4Q9_TRIUA Polyubiquitin-A; Found in the gene: LotjaGi3g1v0148400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:19965478..19967053) extracted from Lotus japonicus Gifu genome v1.2.
GTGAATTCGTTCCCCAAATTTGTGGTTTTAATGTTTATGGTCTCAATAGGTGCTTATGATTTTGATGGATTTAGGGTTTA TATTTTGATTTCTATGGTGTAGTTGCTGTGTTTTTTATGATTTTGATGGATTTAGGGTTTATATTTTGATTTCTATGATG TGGTTGCTGTTTTTTGATGTTTTAGTGGTTTGATGTTATCAGATGCAGATTTTTGTGAAAACTCTCACCGGCAAGACCAT TACCCTTGAGGTGGAAAGTTCAGATACCATTGACAATGTTAAAGCGAAAATCCAAGACAAGGAAGGGATCCCACCTGATC AGCAAAGGCTTATCTTTGCTGGTAAGCAATTGGAGGATGGTCGCACCCTTGCTGATTACAACATTCAAAAGGAGTCTACC CTTCACCTTGTTCTTCGCCTCAGGGGTGGCATGCAGATCTTTGTTAAGACTTTGACTGGGAAAACCATCACCCTTGAGGT TGAGTCCTCGGACACCATTGACAATGTCAAGGCGAAGATCCAGGATAAAGAGGGCATCCCTCCAGATCAGCAGAGGTTGA TTTTTGCTGGGAAACAACTTGAGGATGGAAGGACCCTAGCTGATTACAACATCCAGAAGGAGTCCACCCTTCATTTGGTG CTTCGATTGAGAGGTGGCATGCAAATTTTTGTCAAGACCTTGACAGGGAAAACCATCACCCTCGAGGTTGAATCCTCGGA CACCATTGACAATGTCAAGGCGAAGATCCAGGATAAAGAGGGCATCCCTCCAGACCAGCAGAGGCTTATTTTTGCCGGGA AACAGCTTGAGGATGGAAGGACCCTAGCTGATTACAATATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGATTGAGA GGTGGCATGCAAATTTTTGTCAAGACCTTGACAGGAAAGACCATAACTTTGGAGGTGGAGAGCTCAGATACCATTGATAA TGTGAAAGCTAAGATTCAGGATAAGGAGGGCATCCCACCAGACCAGCAGAGGCTTATATTTGCCGGGAAACAGCTTGAAG ATGGAAGAACCCTTGCTGATTACAACATTCAGAAGGAGTCTACTCTGCATTTGGTCTTGCGGCTTCGTGGTGGCATGCAG ATTTTTGTGAAGACTTTAACTGGGAAGACCATTACCTTGGAGGTTGAGAGTTCTGATACCATTGATAATGTTAAGGCGAA GATCCAGGACAAAGAGGGTATCCCACCGGACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGGACCC TTGCTGATTATAATATCCAGAAGGAATCCACTCTGCACTTGGTTTTGCGACTTCGCGGTGGAATGCAGATATTTGTGAAG ACCCTGACCGGAAAGACTATTACCTTGGAGGTGGAAAGCTCTGATACTATTGATAATGTGAAAGCGAAGATCCAGGACAA GGAGGGTATTCCTCCAGACCAACAGCGATTGATTTTTGCTGGCAAGCAATTGGAGGATGGCCGTACTTTGGCAGATTACA ATATTCAGAAGGAATCCACCCTGCATCTTGTCCTTCGCCTTCGTGGTGGCTTTTAG
CDS sequence (LotjaGi3g1v0148400.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTATGGTCTCAATAGGTATGCAGATTTTTGTGAAAACTCTCACCGGCAAGACCATTACCCTTGAGGTGGAAAGTTC AGATACCATTGACAATGTTAAAGCGAAAATCCAAGACAAGGAAGGGATCCCACCTGATCAGCAAAGGCTTATCTTTGCTG GTAAGCAATTGGAGGATGGTCGCACCCTTGCTGATTACAACATTCAAAAGGAGTCTACCCTTCACCTTGTTCTTCGCCTC AGGGGTGGCATGCAGATCTTTGTTAAGACTTTGACTGGGAAAACCATCACCCTTGAGGTTGAGTCCTCGGACACCATTGA CAATGTCAAGGCGAAGATCCAGGATAAAGAGGGCATCCCTCCAGATCAGCAGAGGTTGATTTTTGCTGGGAAACAACTTG AGGATGGAAGGACCCTAGCTGATTACAACATCCAGAAGGAGTCCACCCTTCATTTGGTGCTTCGATTGAGAGGTGGCATG CAAATTTTTGTCAAGACCTTGACAGGGAAAACCATCACCCTCGAGGTTGAATCCTCGGACACCATTGACAATGTCAAGGC GAAGATCCAGGATAAAGAGGGCATCCCTCCAGACCAGCAGAGGCTTATTTTTGCCGGGAAACAGCTTGAGGATGGAAGGA CCCTAGCTGATTACAATATCCAGAAGGAGTCCACCCTTCACTTGGTGCTTCGATTGAGAGGTGGCATGCAAATTTTTGTC AAGACCTTGACAGGAAAGACCATAACTTTGGAGGTGGAGAGCTCAGATACCATTGATAATGTGAAAGCTAAGATTCAGGA TAAGGAGGGCATCCCACCAGACCAGCAGAGGCTTATATTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCTGATT ACAACATTCAGAAGGAGTCTACTCTGCATTTGGTCTTGCGGCTTCGTGGTGGCATGCAGATTTTTGTGAAGACTTTAACT GGGAAGACCATTACCTTGGAGGTTGAGAGTTCTGATACCATTGATAATGTTAAGGCGAAGATCCAGGACAAAGAGGGTAT CCCACCGGACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGTTGGAAGATGGGCGGACCCTTGCTGATTATAATATCCAGA AGGAATCCACTCTGCACTTGGTTTTGCGACTTCGCGGTGGAATGCAGATATTTGTGAAGACCCTGACCGGAAAGACTATT ACCTTGGAGGTGGAAAGCTCTGATACTATTGATAATGTGAAAGCGAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCA ACAGCGATTGATTTTTGCTGGCAAGCAATTGGAGGATGGCCGTACTTTGGCAGATTACAATATTCAGAAGGAATCCACCC TGCATCTTGTCCTTCGCCTTCGTGGTGGCTTTTAG
Protein sequence (LotjaGi3g1v0148400.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFMVSIGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFV KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 84 | 81 | 2.2E-45 | – | |
| PANTHER | 5 | 139 | 135 | 0.0 | – | |
| PANTHER | 5 | 139 | 135 | 0.0 | – | |
| SUPERFAMILY | 5 | 83 | 79 | 6.43E-34 | ||
| ProSiteProfiles | 8 | 83 | 76 | 30.452 | ||
| CDD | 8 | 83 | 76 | 2.44698E-47 | – | |
| SMART | 8 | 79 | 72 | 3.0E-35 | ||
| Pfam | 10 | 81 | 72 | 2.4E-33 | ||
| PRINTS | 18 | 38 | 21 | 7.5E-38 | ||
| ProSitePatterns | 34 | 59 | 26 | - | ||
| PRINTS | 39 | 59 | 21 | 7.5E-38 | ||
| PRINTS | 60 | 81 | 22 | 7.5E-38 | ||
| PANTHER | 79 | 216 | 138 | 0.0 | – | |
| PANTHER | 79 | 216 | 138 | 0.0 | – | |
| SUPERFAMILY | 83 | 159 | 77 | 8.08E-34 | ||
| ProSiteProfiles | 84 | 159 | 76 | 30.452 | ||
| SMART | 84 | 155 | 72 | 3.0E-35 | ||
| CDD | 84 | 159 | 76 | 2.44698E-47 | – | |
| Gene3D | 85 | 159 | 75 | 4.3E-45 | – | |
| Pfam | 86 | 157 | 72 | 2.4E-33 | ||
| ProSitePatterns | 110 | 135 | 26 | - | ||
| PANTHER | 129 | 291 | 163 | 0.0 | – | |
| PANTHER | 129 | 291 | 163 | 0.0 | – | |
| SUPERFAMILY | 159 | 235 | 77 | 1.12E-33 | ||
| SMART | 160 | 231 | 72 | 3.0E-35 | ||
| ProSiteProfiles | 160 | 235 | 76 | 30.452 | ||
| CDD | 160 | 235 | 76 | 2.44698E-47 | – | |
| Gene3D | 160 | 235 | 76 | 1.7E-45 | – | |
| Pfam | 162 | 233 | 72 | 2.4E-33 | ||
| ProSitePatterns | 186 | 211 | 26 | - | ||
| PANTHER | 209 | 368 | 160 | 0.0 | – | |
| PANTHER | 209 | 368 | 160 | 0.0 | – | |
| SUPERFAMILY | 235 | 311 | 77 | 8.08E-34 | ||
| ProSiteProfiles | 236 | 311 | 76 | 30.452 | ||
| SMART | 236 | 307 | 72 | 3.0E-35 | ||
| CDD | 236 | 311 | 76 | 2.44698E-47 | – | |
| Gene3D | 236 | 311 | 76 | 2.8E-45 | – | |
| Pfam | 238 | 309 | 72 | 2.4E-33 | ||
| ProSitePatterns | 262 | 287 | 26 | - | ||
| PANTHER | 288 | 404 | 117 | 0.0 | – | |
| PANTHER | 288 | 404 | 117 | 0.0 | – | |
| SUPERFAMILY | 311 | 387 | 77 | 8.08E-34 | ||
| SMART | 312 | 383 | 72 | 3.0E-35 | ||
| CDD | 312 | 387 | 76 | 2.44698E-47 | – | |
| Gene3D | 312 | 387 | 76 | 2.8E-45 | – | |
| ProSiteProfiles | 312 | 387 | 76 | 30.452 | ||
| Pfam | 314 | 385 | 72 | 2.4E-33 | ||
| ProSitePatterns | 338 | 363 | 26 | - | ||
| PANTHER | 358 | 463 | 106 | 0.0 | – | |
| PANTHER | 358 | 463 | 106 | 0.0 | – | |
| SUPERFAMILY | 387 | 463 | 77 | 8.5E-34 | ||
| SMART | 388 | 459 | 72 | 3.0E-35 | ||
| ProSiteProfiles | 388 | 463 | 76 | 30.452 | ||
| Gene3D | 388 | 464 | 77 | 4.9E-45 | – | |
| CDD | 388 | 463 | 76 | 2.44698E-47 | – | |
| Pfam | 390 | 461 | 72 | 2.4E-33 | ||
| ProSitePatterns | 414 | 439 | 26 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0148400.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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