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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0162300 |
| Transcript ID | LotjaGi3g1v0162300.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); TAIR: AT5G60600.1 4-hydroxy-3-methylbut-2-enyl diphosphate synthase; Swiss-Prot: sp|F4K0E8|ISPG_ARATH 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic; TrEMBL-Plants: tr|A0A151RCK5|A0A151RCK5_CAJCA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Found in the gene: LotjaGi3g1v0162300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22076016..22082362) extracted from Lotus japonicus Gifu genome v1.2.
GTCAAGGATAATGGTACCTTTGAACTTAGATGCTGAACAAACATTTAACATTGTTTTTGTCATTCAGCTTCAACTCCTCT AGTTGCTGTCACAGTTACACAAGTTTAATCTTGTAAACTAACTAGAGGCTGAGAGATTCATAGTTTGAAGCAAGCTTGTT CCCTTCTTCCATTCCTCAATCATCTCCACCAGGTAAACCCACTGATTCAAAGTCAAATGCCCACTTTCCAAGACTCCTCC TTTCTCAACCATTTTCAATTTTTTATTCAATTCACAGATTTTTCAGATTGATTACACAAATGGGTAGTCCATAGTTTCAC TCATCTAATTTTTCAACACAAAAAAATATTATAGTTTTTGTAGAGTTGAAAATTTCATCATATGCAGCGCAGTTTCGTTT GACTAATTGACTTTTTTCTCAATAAATTCTGAAACTTTGTGATTGCTCTGGTGTTGCTGATTATTGATTTTGGTCATTTG AATTTCCAACCTGTGAGTTAAGGTGTTGCTGAGCTTCAAAAATGGCTACTGGGGCTGTGCCAGCTTCGTTTACCAATGTC AAGACTTGGAACTCCAATTTGGGGTTTGCAAAAAGTATTGATTTTGTGAGAGTTGCTGATTTGAAGAGCATAAAATCTGC TAGGACAAAGGTGTCAATCATCAGGAACTCAAATCCTGGTCAGGATATTGCTGAACTTCAGCCTGCATCAGAAGGAAGTC CTCTTTTAGGTATGCCTGGTTCAAATCTATTATGTGTGTGTGTTTGGATTTTCGTTGAATTCAATGTGGATTTGTATTGA ACTCAATGTGCCAAAATCTTACTTCTCCGATTCAGATGTGACAAAATATTAGTAGGATACGTGAAATTGCGTTTGTGTTT GCACGAATGCCCAAATCAAATGAGATTGTTTCGTGGGCTCTTTGTGATTTCGGGTGCAACCAATTATGAGAGTGTTGGAA AGAGAGTGTTATTTTATTTATGACTGTTTGGGTGTTTCTGCTAAAGTGGTTATTTACTTGATTTATTTTTTGGCTGATCC ATGGATAATTTTCTGAATACAGTTCCTAGGCAAAAGTATTGTGAATCTATACACAAAACTGTCAGGAGGAAAACTAACAC AGTGATGGTTGGTAACGTGGCCATTGGTAGTGAGCATCCTATAAGAATTCAGACCATGACCACTACTGACACTAAGGATG TTGCTGGAACTGTTGAACAGGTTAGACAACTATTCTTCTTTGCAACTATTCTTATTTGCAATTGATTAATGTATTTGATT GTTATGGTTATTAATCTGCTGTCCATTGGAAGGTGATGAGAATCGCAGATAAAGGAGCTGATATTGTTCGGATAACAGTT CAAGGGAAGAAAGAAGCCGATGCATGTTTTGAGATTAAAAACTCCCTTGTGCAGAAGAAGTAAGCATAAATTATAATTAA CATGGTTGGTTAAGTAAGCTTGCCCATATTGTTTATGTATTCATCTGTGTACTTATTTACCTATGTCCAGCTACAACATA CCATTGGTGGCTGATATTCATTTTGCACCCTCTGTTGCTCTGCGAGTAGCAGAATGCTTTGACAAGATTCGTGTCAACCC TGGAAATTTCGGTATGCATATCTTCATTAATTCATTTGTCTCCTTTTATTTTTTCTATTTCCTTTAAATTTTACGTGCTG TATTGCATTCTGAATCTGAGATGGTGGTCTTTCATAGCTGATAGAAGGGCTCAATTTGAACAATTAGAGTACACAGAAGA TGACTATCAGAAAGAACTTGAGCATATTGAACAGGTGAATTTTAACTTTTAAGTCAGAAATTTTGGTGAAGTGCATGTGT ATGCTAATTTATGAGCACTTCAATTGGGGTGACTTATCTCTCATACACGCATCTTTAGTCCTTACTTAGGATGTGGGAAC AATTGATGTACTACATAAATAATGCTAGGAATATTAAGGAATATTCAGGAAAAGGGATATGGAATGCTGTATCATTCATG CTGTTTACAAGATTCTTTCCTTATCTTTTGCTTGTTTTCCGGGAACAATAAGTATAATTTCTCCAGGCTGAGCGAATGTC CAAAGAAAACATTATTTTTTCTTTCCGGAAATGTTTGTCATATTTGTATTTTCCTTTGATGCCTGGAAACTTTAGTTTCT TCTTTTTAATTTCTGTTAGAATTAATAATACCACAAATGAAATACGAACTCATTGACCTATTTTAAACATTATTTAATGC CAGGTTTTCTCGCCATTAGTTGAAAAATGTAAAAAATATGGGAGAGCAATGCGCATTGGGACAAACCATGGCAGTCTTTC TGATCGTATAATGAGCTACTATGGAGATTCTCCTCGGGGAATGGTCGGTCCTTCTTCCCCCTCTTATTCAGCAATGCATT TTTTGTGTAAATGTATTTCCTCCAGATATTTGTTCTTACTGGGCAATAATTGGACAGGTGGAATCTGCTTTCGAATTTGC AAGAATATGCCGAAAGTTTGACTATCACAATTTTGTCTTTTCTATGAAAGCAAGCAACCCAGTTATCATGGTTCAGGCAT ATCGCTTACTTGTAGCTGAAATGTATGTCCAAGGCTGGGACTATCCATTACACTTGGGAGTTACTGAAGCTGGAGAAGGT GAGGATGGGAGGATGAAGTCTGCAATTGGTATTGGAACTCTTCTTCAGGTATGCATGTTAACCAATTGCATATTAAATGG AAATTGTGAAATTTTTCAATTTCCATAAAAAATGGAAATATTCACCCAGCTGTTTAACATTCATTATAGACTTATGATGT ATGTTGATAATATTTTGTTCATCAGGATGGATTGGGTGATACAATTAGAGTTTCTCTCACAGAACCACCAGAGGAGGAGA TAGATCCTTGCAGAAGGTTGGCGAACCTTGGAATGAGAGCAGCTGAACTCCAGAAAGGGGTGGTATGGTTCAAAACTATG CTTCAATTTGACATGCTGAAACATTCTAAAGTCTGACATCCTTAAATTTTAACAACTTTTAATAATATTTCTTCCATCAG GCACCTTTCGAAGAAAAGCACAGACATTATTTTGACTTCCAGCGCCGTTCTGGTCAATTGCCAGTGCAAAAAGAGGTTAA ATTATGAACTATGGGAGAATACTTAGCCAGATATATGCCACATGCACACAAACTCTGAGATTGTTTCCTTATTTTCCTTC TTATGGCTTGATCCATGCATTTAGTACTGAACTCTCCATCTTAATTCAGGGTGAGGAGGTGGATTTCAGAGGTGCCCTGC ACCGGGATGGTTCGGTTCTCATGTCAGTGACCTTGGATCAGTTAAAGGTAACATTAGGATAGCTCTTCCCTGCTTTCTCT TCTGTCTGTCTAACTGGATATCTTTGTCAGTATATCTGTTTGTGTTTATCTAAATTTTATTCTCTTTATTTTCATGTATT GTTATGAGGTATACCAAAAAACCAAGGGTGTCTTGTGTTATTCTGAAATTTTTCATTCCCTGATTTTCACAGACACCAGA GCTTCTCTACAAGTCACTTTCTGCCAAACTCATTGTTGGCATGCCATTTAAGGTTTTTTACTCTATCTTATTGAATGAAT GTCTTAGGATTTTAAGTAACAGGTTATTTACATATTAGGCCTTATATACTCAGGATCTGGCTACAGTAGATTCAATCTTA TTGCGAGAACTTCCTCCAGTCGAAGATGCTGATTCTGTAAGAACTGAGAACCTTCACTTGAGAAATCATGTCTATATAGA AGCATTTACTTGTTCTGCTTCATTATCCATCAAAATATTTCTGCATTGTCAATTTATTGTGACTGTTGGAATAATTTTCT TTTCCTCTTTTTCATTTTGGGTACTATGATCAGCGGCTAGCTCTCAAAAGACTGATAGATATTAGTATGGGGGTTATAAC TCCTTTGTCAGAGCAGCTAACAAAGCCATTACCCAATGCCTTGGTTCTGGTAAACCTTAAGGAACTATCTACTGGAGTTT ATAAGCTTTTGCCACAAGGTGCTACTCACTCCGAGTATTTTTTTTTGAAGGTTCTAAATAATTACATGGACATTCCTTCA GATTTAATGACATTATACAAAGCTTGTTTTGAAAATTACGTAGAGTTCCCTTCTCTGAATTTTAACATAAGCTAAAGGTC GATCTATAGCAGTTAAAATAAGGAAGGTCCATGGTTTTTCTTTTAAACATGTAATGCACTTCGATAAAATCTTTTCCTCT CCAATTTAAAGTTAAATGTGATCTTATATCAATTGGTGATCTATTAGGTACCCGCTTGGTGGTGTCAGTACGAGGTGATG AGCCTTATGAAGAACTGGAAATTCTAAAAGGTGTTGATGCTACTATGCTTCTCCATGACCTGTCTTATGCCGAAGACAAA GTTAGTAGAGTGCATGCAGCAAGAAGGTGAGAATGTTGCTGACTTTGATTTCTGAACTTCACTTTTTGGGCTCTAAATAA TACTACCTCCGTACCTTATTATTTAGAGCCCCAAAAAGAGGCACACCTTGGTCATTTTTATAGAAACTCACTTGAAGTTT GTGGTGCATTAATTATTTTTTGACAAGAATACCCGTATTTAATTGAACTTTCTCTCTCTTTCCACTCTCCAAAGCATAGA AATTAAGAAAAGTGGGTTATGAGTAATTTTGGAAAGTTGATGTAAATTGAGAACAAATTTAATGTTGCTAACTACATTAA CCACATTTCTTAAAGGCTGTGAGATAGTAGTTATTTGGTTCTTATAATAAGGAGGTAGCAATATAAGCATAAATTGATGA GTGACAAACAAGTCTACATTGATCTTAATTGCTTGTATATATGATTCTGGATAATGAATCTATAGTGGTTCATAGATTAT TCTAATCCTAATACCTTTTATTGGCCTCAGGTTATTTGAATACCTATCAGACAATTCTCTAAACTTCCCTGTCATTCACC ACATTCAATTTCCAAATGGGATTCACAGGTAATTTAAAGTTACTACGGTAAGACTCAAGAAGTATGCAGTCCTTGTGAAA ACTAATCAATTTGACATACAGGGATGACTTAGTGATCGGTGCTGGCTCTGATGCTGGTTCGCTTCTGGTTGATGGGCTTG GAGATGGTCTTCTCTTGGAAGCCCCAGACCAGGATTTTGACTTTCTTAGAAACACATCTTTCAATTTGCTGCAAGGATGC CGAATGAGAAATACAAAAACAGTATGTAGTTTAAGCTCACATACAAGACAAAGATTGAATTGGGAAAAAATAATAATAAT CCTAATCTTTATTGATATGCCTAATATGTCATGCAGGAGTATGTATCATGCCCATCCTGTGGCAGAACCTTGTTTGATCT TCAAGTAATAAGTGCAGAAATTCGAGAGAAGACATCGCACCTCCCTGGTGTCTCGGTAATTGTGCTATCCTTTCCTTTCT TGTGTAGAACATGCTCCTGGCGTGTGTCGTGCTTTGATTTGCTTCCACACAAATAACCAATTCCTTTGTTTTGTAATAAT TACTTTGTCCTGCATCAGATTGCAATCATGGGATGCATTGTGAATGGACCGGGGGAGATGGCTGATGCAGATTTTGGGTA CGTGGGAGGTGCTCCGGGGAAGATTGACCTCTACGTTGGGAAGGTGACATGTTCTTTATATGCCTAAATGCTTAACAACC TGAATATGAAAACTCAGTAATTTGTTTTCAGTTTTATTCGCTTAATGAACTTAACTTGAGTCATTACTTTACGATTACAG ACTGTGGTGAAGCGTGGAATTGAAATGGAGCACGCAACCAATGCACTGATTGATCTAATAAAAGAGCATGGACGTTGGGT AGACCCTCCAGCAGAGGAGTAAAAGGGCTACATTTTTATGTGATTTTCTTCTCTTCTCACCCAAGAGACGTTGGGTTATA GTTACTTTATACTCTATGTACATTTATATAAGCATTGAAATTTAGCTTTCAAATTTCTTTTTAACAGAGGTCCCAAATAA AGGGGGGACTCCCCAGCTGCACCTCTGTACAGACTATTTATTGCTTTGCCCCCAATCAATAGGGATAATTTTATAGAGAA AGAGTTCTTGGAACAATGCCAATTATAGGATATTTCATTCAGATTTCAGATTTTATAGAGAAATTAATTCTTGAACCAGT TGCTGGTGATGCTTGTCATGTGTTTCTGTTGTTTGTATGGCTGTGTTAACATGGTATTGGTATCCTTCGAGACCCAATTT CTTAATGAGAGGGTCTAAACGTTTACAACTTTAAGGCAACAAAGAAATTGGTAGCAACTCGTATACACTTACCTGCATGA CAATGACATCTGAAAAAAATGTTTTGC
CDS sequence (LotjaGi3g1v0162300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACTGGGGCTGTGCCAGCTTCGTTTACCAATGTCAAGACTTGGAACTCCAATTTGGGGTTTGCAAAAAGTATTGA TTTTGTGAGAGTTGCTGATTTGAAGAGCATAAAATCTGCTAGGACAAAGGTGTCAATCATCAGGAACTCAAATCCTGGTC AGGATATTGCTGAACTTCAGCCTGCATCAGAAGGAAGTCCTCTTTTAGTTCCTAGGCAAAAGTATTGTGAATCTATACAC AAAACTGTCAGGAGGAAAACTAACACAGTGATGGTTGGTAACGTGGCCATTGGTAGTGAGCATCCTATAAGAATTCAGAC CATGACCACTACTGACACTAAGGATGTTGCTGGAACTGTTGAACAGGTGATGAGAATCGCAGATAAAGGAGCTGATATTG TTCGGATAACAGTTCAAGGGAAGAAAGAAGCCGATGCATGTTTTGAGATTAAAAACTCCCTTGTGCAGAAGAACTACAAC ATACCATTGGTGGCTGATATTCATTTTGCACCCTCTGTTGCTCTGCGAGTAGCAGAATGCTTTGACAAGATTCGTGTCAA CCCTGGAAATTTCGCTGATAGAAGGGCTCAATTTGAACAATTAGAGTACACAGAAGATGACTATCAGAAAGAACTTGAGC ATATTGAACAGGTTTTCTCGCCATTAGTTGAAAAATGTAAAAAATATGGGAGAGCAATGCGCATTGGGACAAACCATGGC AGTCTTTCTGATCGTATAATGAGCTACTATGGAGATTCTCCTCGGGGAATGGTGGAATCTGCTTTCGAATTTGCAAGAAT ATGCCGAAAGTTTGACTATCACAATTTTGTCTTTTCTATGAAAGCAAGCAACCCAGTTATCATGGTTCAGGCATATCGCT TACTTGTAGCTGAAATGTATGTCCAAGGCTGGGACTATCCATTACACTTGGGAGTTACTGAAGCTGGAGAAGGTGAGGAT GGGAGGATGAAGTCTGCAATTGGTATTGGAACTCTTCTTCAGGATGGATTGGGTGATACAATTAGAGTTTCTCTCACAGA ACCACCAGAGGAGGAGATAGATCCTTGCAGAAGGTTGGCGAACCTTGGAATGAGAGCAGCTGAACTCCAGAAAGGGGTGG CACCTTTCGAAGAAAAGCACAGACATTATTTTGACTTCCAGCGCCGTTCTGGTCAATTGCCAGTGCAAAAAGAGGGTGAG GAGGTGGATTTCAGAGGTGCCCTGCACCGGGATGGTTCGGTTCTCATGTCAGTGACCTTGGATCAGTTAAAGACACCAGA GCTTCTCTACAAGTCACTTTCTGCCAAACTCATTGTTGGCATGCCATTTAAGGATCTGGCTACAGTAGATTCAATCTTAT TGCGAGAACTTCCTCCAGTCGAAGATGCTGATTCTCGGCTAGCTCTCAAAAGACTGATAGATATTAGTATGGGGGTTATA ACTCCTTTGTCAGAGCAGCTAACAAAGCCATTACCCAATGCCTTGGTTCTGGTAAACCTTAAGGAACTATCTACTGGAGT TTATAAGCTTTTGCCACAAGGTACCCGCTTGGTGGTGTCAGTACGAGGTGATGAGCCTTATGAAGAACTGGAAATTCTAA AAGGTGTTGATGCTACTATGCTTCTCCATGACCTGTCTTATGCCGAAGACAAAGTTAGTAGAGTGCATGCAGCAAGAAGG TTATTTGAATACCTATCAGACAATTCTCTAAACTTCCCTGTCATTCACCACATTCAATTTCCAAATGGGATTCACAGGGA TGACTTAGTGATCGGTGCTGGCTCTGATGCTGGTTCGCTTCTGGTTGATGGGCTTGGAGATGGTCTTCTCTTGGAAGCCC CAGACCAGGATTTTGACTTTCTTAGAAACACATCTTTCAATTTGCTGCAAGGATGCCGAATGAGAAATACAAAAACAGAG TATGTATCATGCCCATCCTGTGGCAGAACCTTGTTTGATCTTCAAGTAATAAGTGCAGAAATTCGAGAGAAGACATCGCA CCTCCCTGGTGTCTCGATTGCAATCATGGGATGCATTGTGAATGGACCGGGGGAGATGGCTGATGCAGATTTTGGGTACG TGGGAGGTGCTCCGGGGAAGATTGACCTCTACGTTGGGAAGACTGTGGTGAAGCGTGGAATTGAAATGGAGCACGCAACC AATGCACTGATTGATCTAATAAAAGAGCATGGACGTTGGGTAGACCCTCCAGCAGAGGAGTAA
Protein sequence (LotjaGi3g1v0162300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATGAVPASFTNVKTWNSNLGFAKSIDFVRVADLKSIKSARTKVSIIRNSNPGQDIAELQPASEGSPLLVPRQKYCESIH KTVRRKTNTVMVGNVAIGSEHPIRIQTMTTTDTKDVAGTVEQVMRIADKGADIVRITVQGKKEADACFEIKNSLVQKNYN IPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTEDDYQKELEHIEQVFSPLVEKCKKYGRAMRIGTNHG SLSDRIMSYYGDSPRGMVESAFEFARICRKFDYHNFVFSMKASNPVIMVQAYRLLVAEMYVQGWDYPLHLGVTEAGEGED GRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANLGMRAAELQKGVAPFEEKHRHYFDFQRRSGQLPVQKEGE EVDFRGALHRDGSVLMSVTLDQLKTPELLYKSLSAKLIVGMPFKDLATVDSILLRELPPVEDADSRLALKRLIDISMGVI TPLSEQLTKPLPNALVLVNLKELSTGVYKLLPQGTRLVVSVRGDEPYEELEILKGVDATMLLHDLSYAEDKVSRVHAARR LFEYLSDNSLNFPVIHHIQFPNGIHRDDLVIGAGSDAGSLLVDGLGDGLLLEAPDQDFDFLRNTSFNLLQGCRMRNTKTE YVSCPSCGRTLFDLQVISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIEMEHAT NALIDLIKEHGRWVDPPAEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 740 | 740 | 0.0 | – | |
| PANTHER | 1 | 740 | 740 | 0.0 | ||
| PIRSF | 7 | 737 | 731 | 1.2E-283 | ||
| Gene3D | 80 | 365 | 286 | 2.5E-112 | ||
| Hamap | 82 | 732 | 651 | 39.887 | ||
| TIGRFAM | 84 | 728 | 645 | 7.3E-141 | ||
| Pfam | 87 | 729 | 643 | 3.2E-153 | ||
| Coils | 198 | 218 | 21 | - | – | |
| Gene3D | 636 | 733 | 98 | 2.2E-27 | – | |
| SUPERFAMILY | 639 | 732 | 94 | 1.7E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
| Biological process | Isoprenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. | ||
| Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. | ||
| Biological process | Cellular metabolic process | The chemical reactions and pathways by which individual cells transform chemical substances. | ||
| Molecular function | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | Catalysis of the reaction: (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate + H2O + 2 oxidized ferredoxin = 2-C-methyl-D-erythritol 2,4-cyclodiphosphate + 2 reduced ferredoxin. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0162300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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