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LotjaGi3g1v0162300.2

Overview

Field Value
Gene ID LotjaGi3g1v0162300
Transcript ID LotjaGi3g1v0162300.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); TAIR: AT5G60600.1 4-hydroxy-3-methylbut-2-enyl diphosphate synthase; Swiss-Prot: sp|F4K0E8|ISPG_ARATH 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic; TrEMBL-Plants: tr|A0A151RCK5|A0A151RCK5_CAJCA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Found in the gene: LotjaGi3g1v0162300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:22076779..22081877) extracted from Lotus japonicus Gifu genome v1.2.

TTGGATTTTCGTTGAATTCAATGTGGATTTGTATTGAACTCAATGTGCCAAAATCTTACTTCTCCGATTCAGATGTGACA AAATATTAGTAGGATACGTGAAATTGCGTTTGTGTTTGCACGAATGCCCAAATCAAATGAGATTGTTTCGTGGGCTCTTT GTGATTTCGGGTGCAACCAATTATGAGAGTGTTGGAAAGAGAGTGTTATTTTATTTATGACTGTTTGGGTGTTTCTGCTA AAGTGGTTATTTACTTGATTTATTTTTTGGCTGATCCATGGATAATTTTCTGAATACAGTTCCTAGGCAAAAGTATTGTG AATCTATACACAAAACTGTCAGGAGGAAAACTAACACAGTGATGGTTGGTAACGTGGCCATTGGTAGTGAGCATCCTATA AGAATTCAGACCATGACCACTACTGACACTAAGGATGTTGCTGGAACTGTTGAACAGGTTAGACAACTATTCTTCTTTGC AACTATTCTTATTTGCAATTGATTAATGTATTTGATTGTTATGGTTATTAATCTGCTGTCCATTGGAAGGTGATGAGAAT CGCAGATAAAGGAGCTGATATTGTTCGGATAACAGTTCAAGGGAAGAAAGAAGCCGATGCATGTTTTGAGATTAAAAACT CCCTTGTGCAGAAGAAGTAAGCATAAATTATAATTAACATGGTTGGTTAAGTAAGCTTGCCCATATTGTTTATGTATTCA TCTGTGTACTTATTTACCTATGTCCAGCTACAACATACCATTGGTGGCTGATATTCATTTTGCACCCTCTGTTGCTCTGC GAGTAGCAGAATGCTTTGACAAGATTCGTGTCAACCCTGGAAATTTCGGTATGCATATCTTCATTAATTCATTTGTCTCC TTTTATTTTTTCTATTTCCTTTAAATTTTACGTGCTGTATTGCATTCTGAATCTGAGATGGTGGTCTTTCATAGCTGATA GAAGGGCTCAATTTGAACAATTAGAGTACACAGAAGATGACTATCAGAAAGAACTTGAGCATATTGAACAGGTGAATTTT AACTTTTAAGTCAGAAATTTTGGTGAAGTGCATGTGTATGCTAATTTATGAGCACTTCAATTGGGGTGACTTATCTCTCA TACACGCATCTTTAGTCCTTACTTAGGATGTGGGAACAATTGATGTACTACATAAATAATGCTAGGAATATTAAGGAATA TTCAGGAAAAGGGATATGGAATGCTGTATCATTCATGCTGTTTACAAGATTCTTTCCTTATCTTTTGCTTGTTTTCCGGG AACAATAAGTATAATTTCTCCAGGCTGAGCGAATGTCCAAAGAAAACATTATTTTTTCTTTCCGGAAATGTTTGTCATAT TTGTATTTTCCTTTGATGCCTGGAAACTTTAGTTTCTTCTTTTTAATTTCTGTTAGAATTAATAATACCACAAATGAAAT ACGAACTCATTGACCTATTTTAAACATTATTTAATGCCAGGTTTTCTCGCCATTAGTTGAAAAATGTAAAAAATATGGGA GAGCAATGCGCATTGGGACAAACCATGGCAGTCTTTCTGATCGTATAATGAGCTACTATGGAGATTCTCCTCGGGGAATG GTCGGTCCTTCTTCCCCCTCTTATTCAGCAATGCATTTTTTGTGTAAATGTATTTCCTCCAGATATTTGTTCTTACTGGG CAATAATTGGACAGGTGGAATCTGCTTTCGAATTTGCAAGAATATGCCGAAAGTTTGACTATCACAATTTTGTCTTTTCT ATGAAAGCAAGCAACCCAGTTATCATGGTTCAGGCATATCGCTTACTTGTAGCTGAAATGTATGTCCAAGGCTGGGACTA TCCATTACACTTGGGAGTTACTGAAGCTGGAGAAGGTGAGGATGGGAGGATGAAGTCTGCAATTGGTATTGGAACTCTTC TTCAGGTATGCATGTTAACCAATTGCATATTAAATGGAAATTGTGAAATTTTTCAATTTCCATAAAAAATGGAAATATTC ACCCAGCTGTTTAACATTCATTATAGACTTATGATGTATGTTGATAATATTTTGTTCATCAGGATGGATTGGGTGATACA ATTAGAGTTTCTCTCACAGAACCACCAGAGGAGGAGATAGATCCTTGCAGAAGGTTGGCGAACCTTGGAATGAGAGCAGC TGAACTCCAGAAAGGGGTGGTATGGTTCAAAACTATGCTTCAATTTGACATGCTGAAACATTCTAAAGTCTGACATCCTT AAATTTTAACAACTTTTAATAATATTTCTTCCATCAGGCACCTTTCGAAGAAAAGCACAGACATTATTTTGACTTCCAGC GCCGTTCTGGTCAATTGCCAGTGCAAAAAGAGGTTAAATTATGAACTATGGGAGAATACTTAGCCAGATATATGCCACAT GCACACAAACTCTGAGATTGTTTCCTTATTTTCCTTCTTATGGCTTGATCCATGCATTTAGTACTGAACTCTCCATCTTA ATTCAGGGTGAGGAGGTGGATTTCAGAGGTGCCCTGCACCGGGATGGTTCGGTTCTCATGTCAGTGACCTTGGATCAGTT AAAGGTAACATTAGGATAGCTCTTCCCTGCTTTCTCTTCTGTCTGTCTAACTGGATATCTTTGTCAGTATATCTGTTTGT GTTTATCTAAATTTTATTCTCTTTATTTTCATGTATTGTTATGAGGTATACCAAAAAACCAAGGGTGTCTTGTGTTATTC TGAAATTTTTCATTCCCTGATTTTCACAGACACCAGAGCTTCTCTACAAGTCACTTTCTGCCAAACTCATTGTTGGCATG CCATTTAAGGTTTTTTACTCTATCTTATTGAATGAATGTCTTAGGATTTTAAGTAACAGGTTATTTACATATTAGGCCTT ATATACTCAGGATCTGGCTACAGTAGATTCAATCTTATTGCGAGAACTTCCTCCAGTCGAAGATGCTGATTCTGTAAGAA CTGAGAACCTTCACTTGAGAAATCATGTCTATATAGAAGCATTTACTTGTTCTGCTTCATTATCCATCAAAATATTTCTG CATTGTCAATTTATTGTGACTGTTGGAATAATTTTCTTTTCCTCTTTTTCATTTTGGGTACTATGATCAGCGGCTAGCTC TCAAAAGACTGATAGATATTAGTATGGGGGTTATAACTCCTTTGTCAGAGCAGCTAACAAAGCCATTACCCAATGCCTTG GTTCTGGTAAACCTTAAGGAACTATCTACTGGAGTTTATAAGCTTTTGCCACAAGGTGCTACTCACTCCGAGTATTTTTT TTTGAAGGTTCTAAATAATTACATGGACATTCCTTCAGATTTAATGACATTATACAAAGCTTGTTTTGAAAATTACGTAG AGTTCCCTTCTCTGAATTTTAACATAAGCTAAAGGTCGATCTATAGCAGTTAAAATAAGGAAGGTCCATGGTTTTTCTTT TAAACATGTAATGCACTTCGATAAAATCTTTTCCTCTCCAATTTAAAGTTAAATGTGATCTTATATCAATTGGTGATCTA TTAGGTACCCGCTTGGTGGTGTCAGTACGAGGTGATGAGCCTTATGAAGAACTGGAAATTCTAAAAGGTGTTGATGCTAC TATGCTTCTCCATGACCTGTCTTATGCCGAAGACAAAGTTAGTAGAGTGCATGCAGCAAGAAGGTGAGAATGTTGCTGAC TTTGATTTCTGAACTTCACTTTTTGGGCTCTAAATAATACTACCTCCGTACCTTATTATTTAGAGCCCCAAAAAGAGGCA CACCTTGGTCATTTTTATAGAAACTCACTTGAAGTTTGTGGTGCATTAATTATTTTTTGACAAGAATACCCGTATTTAAT TGAACTTTCTCTCTCTTTCCACTCTCCAAAGCATAGAAATTAAGAAAAGTGGGTTATGAGTAATTTTGGAAAGTTGATGT AAATTGAGAACAAATTTAATGTTGCTAACTACATTAACCACATTTCTTAAAGGCTGTGAGATAGTAGTTATTTGGTTCTT ATAATAAGGAGGTAGCAATATAAGCATAAATTGATGAGTGACAAACAAGTCTACATTGATCTTAATTGCTTGTATATATG ATTCTGGATAATGAATCTATAGTGGTTCATAGATTATTCTAATCCTAATACCTTTTATTGGCCTCAGGTTATTTGAATAC CTATCAGACAATTCTCTAAACTTCCCTGTCATTCACCACATTCAATTTCCAAATGGGATTCACAGGTAATTTAAAGTTAC TACGGTAAGACTCAAGAAGTATGCAGTCCTTGTGAAAACTAATCAATTTGACATACAGGGATGACTTAGTGATCGGTGCT GGCTCTGATGCTGGTTCGCTTCTGGTTGATGGGCTTGGAGATGGTCTTCTCTTGGAAGCCCCAGACCAGGATTTTGACTT TCTTAGAAACACATCTTTCAATTTGCTGCAAGGATGCCGAATGAGAAATACAAAAACAGTATGTAGTTTAAGCTCACATA CAAGACAAAGATTGAATTGGGAAAAAATAATAATAATCCTAATCTTTATTGATATGCCTAATATGTCATGCAGGAGTATG TATCATGCCCATCCTGTGGCAGAACCTTGTTTGATCTTCAAGTAATAAGTGCAGAAATTCGAGAGAAGACATCGCACCTC CCTGGTGTCTCGGTAATTGTGCTATCCTTTCCTTTCTTGTGTAGAACATGCTCCTGGCGTGTGTCGTGCTTTGATTTGCT TCCACACAAATAACCAATTCCTTTGTTTTGTAATAATTACTTTGTCCTGCATCAGATTGCAATCATGGGATGCATTGTGA ATGGACCGGGGGAGATGGCTGATGCAGATTTTGGGTACGTGGGAGGTGCTCCGGGGAAGATTGACCTCTACGTTGGGAAG GTGACATGTTCTTTATATGCCTAAATGCTTAACAACCTGAATATGAAAACTCAGTAATTTGTTTTCAGTTTTATTCGCTT AATGAACTTAACTTGAGTCATTACTTTACGATTACAGACTGTGGTGAAGCGTGGAATTGAAATGGAGCACGCAACCAATG CACTGATTGATCTAATAAAAGAGCATGGACGTTGGGTAGACCCTCCAGCAGAGGAGTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0162300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGGTAACGTGGCCATTGGTAGTGAGCATCCTATAAGAATTCAGACCATGACCACTACTGACACTAAGGATGTTGC TGGAACTGTTGAACAGGTGATGAGAATCGCAGATAAAGGAGCTGATATTGTTCGGATAACAGTTCAAGGGAAGAAAGAAG CCGATGCATGTTTTGAGATTAAAAACTCCCTTGTGCAGAAGAACTACAACATACCATTGGTGGCTGATATTCATTTTGCA CCCTCTGTTGCTCTGCGAGTAGCAGAATGCTTTGACAAGATTCGTGTCAACCCTGGAAATTTCGCTGATAGAAGGGCTCA ATTTGAACAATTAGAGTACACAGAAGATGACTATCAGAAAGAACTTGAGCATATTGAACAGGTTTTCTCGCCATTAGTTG AAAAATGTAAAAAATATGGGAGAGCAATGCGCATTGGGACAAACCATGGCAGTCTTTCTGATCGTATAATGAGCTACTAT GGAGATTCTCCTCGGGGAATGGTGGAATCTGCTTTCGAATTTGCAAGAATATGCCGAAAGTTTGACTATCACAATTTTGT CTTTTCTATGAAAGCAAGCAACCCAGTTATCATGGTTCAGGCATATCGCTTACTTGTAGCTGAAATGTATGTCCAAGGCT GGGACTATCCATTACACTTGGGAGTTACTGAAGCTGGAGAAGGTGAGGATGGGAGGATGAAGTCTGCAATTGGTATTGGA ACTCTTCTTCAGGATGGATTGGGTGATACAATTAGAGTTTCTCTCACAGAACCACCAGAGGAGGAGATAGATCCTTGCAG AAGGTTGGCGAACCTTGGAATGAGAGCAGCTGAACTCCAGAAAGGGGTGGCACCTTTCGAAGAAAAGCACAGACATTATT TTGACTTCCAGCGCCGTTCTGGTCAATTGCCAGTGCAAAAAGAGGGTGAGGAGGTGGATTTCAGAGGTGCCCTGCACCGG GATGGTTCGGTTCTCATGTCAGTGACCTTGGATCAGTTAAAGACACCAGAGCTTCTCTACAAGTCACTTTCTGCCAAACT CATTGTTGGCATGCCATTTAAGGATCTGGCTACAGTAGATTCAATCTTATTGCGAGAACTTCCTCCAGTCGAAGATGCTG ATTCTCGGCTAGCTCTCAAAAGACTGATAGATATTAGTATGGGGGTTATAACTCCTTTGTCAGAGCAGCTAACAAAGCCA TTACCCAATGCCTTGGTTCTGGTAAACCTTAAGGAACTATCTACTGGAGTTTATAAGCTTTTGCCACAAGGTACCCGCTT GGTGGTGTCAGTACGAGGTGATGAGCCTTATGAAGAACTGGAAATTCTAAAAGGTGTTGATGCTACTATGCTTCTCCATG ACCTGTCTTATGCCGAAGACAAAGTTAGTAGAGTGCATGCAGCAAGAAGGTTATTTGAATACCTATCAGACAATTCTCTA AACTTCCCTGTCATTCACCACATTCAATTTCCAAATGGGATTCACAGGGATGACTTAGTGATCGGTGCTGGCTCTGATGC TGGTTCGCTTCTGGTTGATGGGCTTGGAGATGGTCTTCTCTTGGAAGCCCCAGACCAGGATTTTGACTTTCTTAGAAACA CATCTTTCAATTTGCTGCAAGGATGCCGAATGAGAAATACAAAAACAGAGTATGTATCATGCCCATCCTGTGGCAGAACC TTGTTTGATCTTCAAGTAATAAGTGCAGAAATTCGAGAGAAGACATCGCACCTCCCTGGTGTCTCGATTGCAATCATGGG ATGCATTGTGAATGGACCGGGGGAGATGGCTGATGCAGATTTTGGGTACGTGGGAGGTGCTCCGGGGAAGATTGACCTCT ACGTTGGGAAGACTGTGGTGAAGCGTGGAATTGAAATGGAGCACGCAACCAATGCACTGATTGATCTAATAAAAGAGCAT GGACGTTGGGTAGACCCTCCAGCAGAGGAGTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0162300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVGNVAIGSEHPIRIQTMTTTDTKDVAGTVEQVMRIADKGADIVRITVQGKKEADACFEIKNSLVQKNYNIPLVADIHFA PSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTEDDYQKELEHIEQVFSPLVEKCKKYGRAMRIGTNHGSLSDRIMSYY GDSPRGMVESAFEFARICRKFDYHNFVFSMKASNPVIMVQAYRLLVAEMYVQGWDYPLHLGVTEAGEGEDGRMKSAIGIG TLLQDGLGDTIRVSLTEPPEEEIDPCRRLANLGMRAAELQKGVAPFEEKHRHYFDFQRRSGQLPVQKEGEEVDFRGALHR DGSVLMSVTLDQLKTPELLYKSLSAKLIVGMPFKDLATVDSILLRELPPVEDADSRLALKRLIDISMGVITPLSEQLTKP LPNALVLVNLKELSTGVYKLLPQGTRLVVSVRGDEPYEELEILKGVDATMLLHDLSYAEDKVSRVHAARRLFEYLSDNSL NFPVIHHIQFPNGIHRDDLVIGAGSDAGSLLVDGLGDGLLLEAPDQDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRT LFDLQVISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIEMEHATNALIDLIKEH GRWVDPPAEE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF037336
1 647 647 2.2E-277
IPR017178
Gene3D
G3DSA:3.20.20.20
1 275 275 4.7E-108
IPR011005
Hamap
MF_00159
1 642 642 37.772
IPR004588
PANTHER
PTHR30454
1 650 650 0.0
IPR004588
Pfam
PF04551
1 639 639 8.5E-152
IPR004588
PANTHER
PTHR30454:SF1
1 650 650 0.0 –
TIGRFAM
TIGR00612
2 638 637 9.2E-138
IPR004588
Coils
Coil
108 128 21 - –
Gene3D
G3DSA:3.30.413.10
546 643 98 1.8E-27 –
SUPERFAMILY
SSF56014
549 642 94 1.37E-13 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005506
Molecular function Iron ion binding Interacting selectively and non-covalently with iron (Fe) ions.
Subterm of
GO:0008299
Biological process Isoprenoid biosynthetic process The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
Subterm of
GO:0016114
Biological process Terpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.
Subterm of
GO:0044237
Biological process Cellular metabolic process The chemical reactions and pathways by which individual cells transform chemical substances.
Subterm of
GO:0046429
Molecular function 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity Catalysis of the reaction: (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate + H2O + 2 oxidized ferredoxin = 2-C-methyl-D-erythritol 2,4-cyclodiphosphate + 2 reduced ferredoxin.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0162300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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