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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0162300 |
Transcript ID | LotjaGi3g1v0162300.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); TAIR: AT5G60600.1 4-hydroxy-3-methylbut-2-enyl diphosphate synthase; Swiss-Prot: sp|F4K0E8|ISPG_ARATH 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic; TrEMBL-Plants: tr|I1M4L1|I1M4L1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0162300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22076793..22081877) extracted from Lotus japonicus Gifu genome v1.2.
AATTCAATGTGGATTTGTATTGAACTCAATGTGCCAAAATCTTACTTCTCCGATTCAGATGTGACAAAATATTAGTAGGA TACGTGAAATTGCGTTTGTGTTTGCACGAATGCCCAAATCAAATGAGATTGTTTCGTGGGCTCTTTGTGATTTCGGGTGC AACCAATTATGAGAGTGTTGGAAAGAGAGTGTTATTTTATTTATGACTGTTTGGGTGTTTCTGCTAAAGTGGTTATTTAC TTGATTTATTTTTTGGCTGATCCATGGATAATTTTCTGAATACAGTTCCTAGGCAAAAGTATTGTGAATCTATACACAAA ACTGTCAGGAGGAAAACTAACACAGTGATGGTTGGTAACGTGGCCATTGGTAGTGAGCATCCTATAAGAATTCAGACCAT GACCACTACTGACACTAAGGATGTTGCTGGAACTGTTGAACAGGTTAGACAACTATTCTTCTTTGCAACTATTCTTATTT GCAATTGATTAATGTATTTGATTGTTATGGTTATTAATCTGCTGTCCATTGGAAGGTGATGAGAATCGCAGATAAAGGAG CTGATATTGTTCGGATAACAGTTCAAGGGAAGAAAGAAGCCGATGCATGTTTTGAGATTAAAAACTCCCTTGTGCAGAAG AAGTAAGCATAAATTATAATTAACATGGTTGGTTAAGTAAGCTTGCCCATATTGTTTATGTATTCATCTGTGTACTTATT TACCTATGTCCAGCTACAACATACCATTGGTGGCTGATATTCATTTTGCACCCTCTGTTGCTCTGCGAGTAGCAGAATGC TTTGACAAGATTCGTGTCAACCCTGGAAATTTCGGTATGCATATCTTCATTAATTCATTTGTCTCCTTTTATTTTTTCTA TTTCCTTTAAATTTTACGTGCTGTATTGCATTCTGAATCTGAGATGGTGGTCTTTCATAGCTGATAGAAGGGCTCAATTT GAACAATTAGAGTACACAGAAGATGACTATCAGAAAGAACTTGAGCATATTGAACAGGTGAATTTTAACTTTTAAGTCAG AAATTTTGGTGAAGTGCATGTGTATGCTAATTTATGAGCACTTCAATTGGGGTGACTTATCTCTCATACACGCATCTTTA GTCCTTACTTAGGATGTGGGAACAATTGATGTACTACATAAATAATGCTAGGAATATTAAGGAATATTCAGGAAAAGGGA TATGGAATGCTGTATCATTCATGCTGTTTACAAGATTCTTTCCTTATCTTTTGCTTGTTTTCCGGGAACAATAAGTATAA TTTCTCCAGGCTGAGCGAATGTCCAAAGAAAACATTATTTTTTCTTTCCGGAAATGTTTGTCATATTTGTATTTTCCTTT GATGCCTGGAAACTTTAGTTTCTTCTTTTTAATTTCTGTTAGAATTAATAATACCACAAATGAAATACGAACTCATTGAC CTATTTTAAACATTATTTAATGCCAGGTTTTCTCGCCATTAGTTGAAAAATGTAAAAAATATGGGAGAGCAATGCGCATT GGGACAAACCATGGCAGTCTTTCTGATCGTATAATGAGCTACTATGGAGATTCTCCTCGGGGAATGGTCGGTCCTTCTTC CCCCTCTTATTCAGCAATGCATTTTTTGTGTAAATGTATTTCCTCCAGATATTTGTTCTTACTGGGCAATAATTGGACAG GTGGAATCTGCTTTCGAATTTGCAAGAATATGCCGAAAGTTTGACTATCACAATTTTGTCTTTTCTATGAAAGCAAGCAA CCCAGTTATCATGGTTCAGGCATATCGCTTACTTGTAGCTGAAATGTATGTCCAAGGCTGGGACTATCCATTACACTTGG GAGTTACTGAAGCTGGAGAAGGTGAGGATGGGAGGATGAAGTCTGCAATTGGTATTGGAACTCTTCTTCAGGTATGCATG TTAACCAATTGCATATTAAATGGAAATTGTGAAATTTTTCAATTTCCATAAAAAATGGAAATATTCACCCAGCTGTTTAA CATTCATTATAGACTTATGATGTATGTTGATAATATTTTGTTCATCAGGATGGATTGGGTGATACAATTAGAGTTTCTCT CACAGAACCACCAGAGGAGGAGATAGATCCTTGCAGAAGGTTGGCGAACCTTGGAATGAGAGCAGCTGAACTCCAGAAAG GGGTGGTATGGTTCAAAACTATGCTTCAATTTGACATGCTGAAACATTCTAAAGTCTGACATCCTTAAATTTTAACAACT TTTAATAATATTTCTTCCATCAGGCACCTTTCGAAGAAAAGCACAGACATTATTTTGACTTCCAGCGCCGTTCTGGTCAA TTGCCAGTGCAAAAAGAGGTTAAATTATGAACTATGGGAGAATACTTAGCCAGATATATGCCACATGCACACAAACTCTG AGATTGTTTCCTTATTTTCCTTCTTATGGCTTGATCCATGCATTTAGTACTGAACTCTCCATCTTAATTCAGGGTGAGGA GGTGGATTTCAGAGGTGCCCTGCACCGGGATGGTTCGGTTCTCATGTCAGTGACCTTGGATCAGTTAAAGGTAACATTAG GATAGCTCTTCCCTGCTTTCTCTTCTGTCTGTCTAACTGGATATCTTTGTCAGTATATCTGTTTGTGTTTATCTAAATTT TATTCTCTTTATTTTCATGTATTGTTATGAGGTATACCAAAAAACCAAGGGTGTCTTGTGTTATTCTGAAATTTTTCATT CCCTGATTTTCACAGACACCAGAGCTTCTCTACAAGTCACTTTCTGCCAAACTCATTGTTGGCATGCCATTTAAGGTTTT TTACTCTATCTTATTGAATGAATGTCTTAGGATTTTAAGTAACAGGTTATTTACATATTAGGCCTTATATACTCAGGATC TGGCTACAGTAGATTCAATCTTATTGCGAGAACTTCCTCCAGTCGAAGATGCTGATTCTGTAAGAACTGAGAACCTTCAC TTGAGAAATCATGTCTATATAGAAGCATTTACTTGTTCTGCTTCATTATCCATCAAAATATTTCTGCATTGTCAATTTAT TGTGACTGTTGGAATAATTTTCTTTTCCTCTTTTTCATTTTGGGTACTATGATCAGCGGCTAGCTCTCAAAAGACTGATA GATATTAGTATGGGGGTTATAACTCCTTTGTCAGAGCAGCTAACAAAGCCATTACCCAATGCCTTGGTTCTGGTAAACCT TAAGGAACTATCTACTGGAGTTTATAAGCTTTTGCCACAAGGTGCTACTCACTCCGAGTATTTTTTTTTGAAGGTTCTAA ATAATTACATGGACATTCCTTCAGATTTAATGACATTATACAAAGCTTGTTTTGAAAATTACGTAGAGTTCCCTTCTCTG AATTTTAACATAAGCTAAAGGTCGATCTATAGCAGTTAAAATAAGGAAGGTCCATGGTTTTTCTTTTAAACATGTAATGC ACTTCGATAAAATCTTTTCCTCTCCAATTTAAAGTTAAATGTGATCTTATATCAATTGGTGATCTATTAGGTACCCGCTT GGTGGTGTCAGTACGAGGTGATGAGCCTTATGAAGAACTGGAAATTCTAAAAGGTGTTGATGCTACTATGCTTCTCCATG ACCTGTCTTATGCCGAAGACAAAGTTAGTAGAGTGCATGCAGCAAGAAGGTGAGAATGTTGCTGACTTTGATTTCTGAAC TTCACTTTTTGGGCTCTAAATAATACTACCTCCGTACCTTATTATTTAGAGCCCCAAAAAGAGGCACACCTTGGTCATTT TTATAGAAACTCACTTGAAGTTTGTGGTGCATTAATTATTTTTTGACAAGAATACCCGTATTTAATTGAACTTTCTCTCT CTTTCCACTCTCCAAAGCATAGAAATTAAGAAAAGTGGGTTATGAGTAATTTTGGAAAGTTGATGTAAATTGAGAACAAA TTTAATGTTGCTAACTACATTAACCACATTTCTTAAAGGCTGTGAGATAGTAGTTATTTGGTTCTTATAATAAGGAGGTA GCAATATAAGCATAAATTGATGAGTGACAAACAAGTCTACATTGATCTTAATTGCTTGTATATATGATTCTGGATAATGA ATCTATAGTGGTTCATAGATTATTCTAATCCTAATACCTTTTATTGGCCTCAGGTTATTTGAATACCTATCAGACAATTC TCTAAACTTCCCTGTCATTCACCACATTCAATTTCCAAATGGGATTCACAGGTAATTTAAAGTTACTACGGTAAGACTCA AGAAGTATGCAGTCCTTGTGAAAACTAATCAATTTGACATACAGGGATGACTTAGTGATCGGTGCTGGCTCTGATGCTGG TTCGCTTCTGGTTGATGGGCTTGGAGATGGTCTTCTCTTGGAAGCCCCAGACCAGGATTTTGACTTTCTTAGAAACACAT CTTTCAATTTGCTGCAAGGATGCCGAATGAGAAATACAAAAACAGTATGTAGTTTAAGCTCACATACAAGACAAAGATTG AATTGGGAAAAAATAATAATAATCCTAATCTTTATTGATATGCCTAATATGTCATGCAGGAGTATGTATCATGCCCATCC TGTGGCAGAACCTTGTTTGATCTTCAAGTAATAAGTGCAGAAATTCGAGAGAAGACATCGCACCTCCCTGGTGTCTCGGT AATTGTGCTATCCTTTCCTTTCTTGTGTAGAACATGCTCCTGGCGTGTGTCGTGCTTTGATTTGCTTCCACACAAATAAC CAATTCCTTTGTTTTGTAATAATTACTTTGTCCTGCATCAGATTGCAATCATGGGATGCATTGTGAATGGACCGGGGGAG ATGGCTGATGCAGATTTTGGGTACGTGGGAGGTGCTCCGGGGAAGATTGACCTCTACGTTGGGAAGGTGACATGTTCTTT ATATGCCTAAATGCTTAACAACCTGAATATGAAAACTCAGTAATTTGTTTTCAGTTTTATTCGCTTAATGAACTTAACTT GAGTCATTACTTTACGATTACAGACTGTGGTGAAGCGTGGAATTGAAATGGAGCACGCAACCAATGCACTGATTGATCTA ATAAAAGAGCATGGACGTTGGGTAGACCCTCCAGCAGAGGAGTAA
CDS sequence (LotjaGi3g1v0162300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGATTTTTCCTAGGCAAAAGTATTGTGAATCTATACACAAAACTGTCAGGAGGAAAACTAACACAGTGATGGTTGG TAACGTGGCCATTGGTAGTGAGCATCCTATAAGAATTCAGACCATGACCACTACTGACACTAAGGATGTTGCTGGAACTG TTGAACAGGTGATGAGAATCGCAGATAAAGGAGCTGATATTGTTCGGATAACAGTTCAAGGGAAGAAAGAAGCCGATGCA TGTTTTGAGATTAAAAACTCCCTTGTGCAGAAGAACTACAACATACCATTGGTGGCTGATATTCATTTTGCACCCTCTGT TGCTCTGCGAGTAGCAGAATGCTTTGACAAGATTCGTGTCAACCCTGGAAATTTCGCTGATAGAAGGGCTCAATTTGAAC AATTAGAGTACACAGAAGATGACTATCAGAAAGAACTTGAGCATATTGAACAGGTTTTCTCGCCATTAGTTGAAAAATGT AAAAAATATGGGAGAGCAATGCGCATTGGGACAAACCATGGCAGTCTTTCTGATCGTATAATGAGCTACTATGGAGATTC TCCTCGGGGAATGGTGGAATCTGCTTTCGAATTTGCAAGAATATGCCGAAAGTTTGACTATCACAATTTTGTCTTTTCTA TGAAAGCAAGCAACCCAGTTATCATGGTTCAGGCATATCGCTTACTTGTAGCTGAAATGTATGTCCAAGGCTGGGACTAT CCATTACACTTGGGAGTTACTGAAGCTGGAGAAGGTGAGGATGGGAGGATGAAGTCTGCAATTGGTATTGGAACTCTTCT TCAGGATGGATTGGGTGATACAATTAGAGTTTCTCTCACAGAACCACCAGAGGAGGAGATAGATCCTTGCAGAAGGTTGG CGAACCTTGGAATGAGAGCAGCTGAACTCCAGAAAGGGGTGGCACCTTTCGAAGAAAAGCACAGACATTATTTTGACTTC CAGCGCCGTTCTGGTCAATTGCCAGTGCAAAAAGAGGGTGAGGAGGTGGATTTCAGAGGTGCCCTGCACCGGGATGGTTC GGTTCTCATGTCAGTGACCTTGGATCAGTTAAAGACACCAGAGCTTCTCTACAAGTCACTTTCTGCCAAACTCATTGTTG GCATGCCATTTAAGGATCTGGCTACAGTAGATTCAATCTTATTGCGAGAACTTCCTCCAGTCGAAGATGCTGATTCTCGG CTAGCTCTCAAAAGACTGATAGATATTAGTATGGGGGTTATAACTCCTTTGTCAGAGCAGCTAACAAAGCCATTACCCAA TGCCTTGGTTCTGGTAAACCTTAAGGAACTATCTACTGGAGTTTATAAGCTTTTGCCACAAGGTACCCGCTTGGTGGTGT CAGTACGAGGTGATGAGCCTTATGAAGAACTGGAAATTCTAAAAGGTGTTGATGCTACTATGCTTCTCCATGACCTGTCT TATGCCGAAGACAAAGTTAGTAGAGTGCATGCAGCAAGAAGGTTATTTGAATACCTATCAGACAATTCTCTAAACTTCCC TGTCATTCACCACATTCAATTTCCAAATGGGATTCACAGGGATGACTTAGTGATCGGTGCTGGCTCTGATGCTGGTTCGC TTCTGGTTGATGGGCTTGGAGATGGTCTTCTCTTGGAAGCCCCAGACCAGGATTTTGACTTTCTTAGAAACACATCTTTC AATTTGCTGCAAGGATGCCGAATGAGAAATACAAAAACAGAGTATGTATCATGCCCATCCTGTGGCAGAACCTTGTTTGA TCTTCAAGTAATAAGTGCAGAAATTCGAGAGAAGACATCGCACCTCCCTGGTGTCTCGGTCGTGCTTTGA
Protein sequence (LotjaGi3g1v0162300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWIFPRQKYCESIHKTVRRKTNTVMVGNVAIGSEHPIRIQTMTTTDTKDVAGTVEQVMRIADKGADIVRITVQGKKEADA CFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTEDDYQKELEHIEQVFSPLVEKC KKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKFDYHNFVFSMKASNPVIMVQAYRLLVAEMYVQGWDY PLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANLGMRAAELQKGVAPFEEKHRHYFDF QRRSGQLPVQKEGEEVDFRGALHRDGSVLMSVTLDQLKTPELLYKSLSAKLIVGMPFKDLATVDSILLRELPPVEDADSR LALKRLIDISMGVITPLSEQLTKPLPNALVLVNLKELSTGVYKLLPQGTRLVVSVRGDEPYEELEILKGVDATMLLHDLS YAEDKVSRVHAARRLFEYLSDNSLNFPVIHHIQFPNGIHRDDLVIGAGSDAGSLLVDGLGDGLLLEAPDQDFDFLRNTSF NLLQGCRMRNTKTEYVSCPSCGRTLFDLQVISAEIREKTSHLPGVSVVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 608 | 606 | 0.0 | – | |
PANTHER | 3 | 608 | 606 | 0.0 | ||
PIRSF | 5 | 609 | 605 | 8.6E-241 | ||
Gene3D | 14 | 299 | 286 | 1.6E-112 | ||
Hamap | 16 | 609 | 594 | 29.556 | ||
TIGRFAM | 18 | 606 | 589 | 4.6E-117 | ||
Pfam | 21 | 607 | 587 | 8.4E-128 | ||
Coils | 132 | 152 | 21 | - | – | |
Gene3D | 461 | 583 | 123 | 3.3E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
Biological process | Isoprenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. | ||
Biological process | Terpenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. | ||
Biological process | Cellular metabolic process | The chemical reactions and pathways by which individual cells transform chemical substances. | ||
Molecular function | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity | Catalysis of the reaction: (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate + H2O + 2 oxidized ferredoxin = 2-C-methyl-D-erythritol 2,4-cyclodiphosphate + 2 reduced ferredoxin. | ||
Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0162300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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