Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0167400.2

Overview

Field Value
Gene ID LotjaGi3g1v0167400
Transcript ID LotjaGi3g1v0167400.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description ABC transporter ATP-binding protein ARB1; TAIR: AT5G60790.1 ABC transporter family protein; Swiss-Prot: sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1; TrEMBL-Plants: tr|I3SWL1|I3SWL1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0167400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:22886713..22889375) extracted from Lotus japonicus Gifu genome v1.2.

TTATTGTTGGTGTGTGTATATGTATTTGAGTGCCTAGCCAGACAGTTGGGTATGAATCATTGACGTTCTACCATGTAGCC AAGGTAAAAAAAACTTGGTTCTCCTTTGTGAATGTAAATTAGAGGTAGGGAATTGTAATATTTTGCCATAAAAGAGGATA GCCTGAAATATGATTTGTAGCTAATTGAATTGTCGATGCATTTCGAGTTAACTGTGTTGTATTGACGTATGTGCATTGCT GATATTACAGATAGAATCTCTATCAGTTACTTTTCATGGACATGATCTGATAGTCGATTCTGAGTTGGAGCTGAATTATG GAAGGTTTGTCTATCCATTTGTTCAGACTGCAGACTTTTATATAGGGTGCTAACATTTGTAACTGCAATATTTATTTATT AGTGATTGTGTTTTCTTTGAATTATTTTCAGACGTTATGGGTTGCTTGGGTTAAATGGTTGTGGAAAATCTACCCTGCTT ACAGCAATAGGTCACCGAGAACTTCCTATACCAGAGCACATGGATATTTATCACCTTACCAGGGAGATTGAAGCCTCTGA CATGTCTGCATTGGAAGCTGTCGTGAGCTGTGATGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAACTTTGGCAGCAC AGGTATGTTTAATTATTGTGACAACTGAACTTTTACACCACTGTTTTGTTGTTGAATGGCTTCATACTTGATTTATTTTT TTCACAGGATGATGGGGGTGGTGAAACTCTCGAACGTATTTATGAACGATTAGAAGCCTTGGATGCATCAACTGCAGAAA AGCGTGCTGCTGAAATTTTACACGGTCTTGGGTTCGACAAAAAGATGCAGGCAAAGAAGACTCGTGATTTTTCTGGTGGC TGGAGAATGAGGATTGCTTTAGCACGAGCTCTATTTATCAACCCGACCATTCTTCTACTTGATGAACCAACCAATCACCT TGGTATTCCTCCTTCCATATAAGAATTTATACTGTCTTTAAGTCTTAATAGTTATTATTACCTTGTCATGCTTTATGCAT TGATTTTTTCGTATAATGATTTTTTCTGCTTGGCTTACTTGTGATTTTGAATTGAAGGGCTGGTGGATTCCTTATCTGTT GTTTAAATTATGTCTACCAAATAAATTAGGCCTTGTGAAGTTTTTGCTGCAACATTTTCTTCGTTTCTCCTGTGATGAAG GAATGCCATGGTGGTTATACTTAAAGATAGTATAATATATTTATATTATGGTTGGTCTGTGAATGCAGTATCCAATAATA TGATTCTAACAACTCTTGATTATTTTGCACTTATCTTGTTCAATTCTCCTTCTCTGTCCACCTTTGGCTGCATTCTATCT CTGCATTATCATATCATTATGTGGTGGTCGCATTTATCCTAATGCAAGTGATGCAATCTTAACTTGGAATTATGGGTGTC ACCTGGGTTATTCTTTCAAATTAAATTCTAGCTATTGGTTTTTTCCTGTATTTTATTTTAATTGCGTGATGTTCTTACAT TTTTTTGAAACATCTGTATTTATGTTCGATCTTTATGTGGAGAGTATTGGTGGGTTCCTAATTATCTTACAAAATGTGTT TTCAGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAATTTTGACCGTATTATGGTTGTGATTTCACATTCCC AGGATTTTCTTAATGGTGTCTGCACGAATATCATTCACATGCAAAGCAAACAATTGAAGATGTATACTGGTAATTATGAT CAATATGTTCAGACACGATCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAGTGGGAGCAGGAACAGATTTCCAACAT GAAAGAATACATTGCCCGATTTGGGCATGGATCAGCAAAATTAGCTCGCCAAGCTCAGAGTAAGGAGAAAACTCTTGCAA AAATGGAGCGGGGTGGACTTACAGAGAAGGTAGCAAGAGACTCAGTTTTGGTATTCCGCTTTGTTGACGTGGGAAAACTT CCACCACCTGTGCTCCAGTTTGTTGAAGTGTCATTTGGTTACACTCCTGATAATCTCATCTACAAGAACATTGACTTTGG AGTTGATTTAGACTCCAGGATTGCTCTTGTTGGACCCAATGGAGCTGGGAAGAGTACATTACTGAAACTAATGACAGGTG AATTGGGTCCTACAGATGGCATGGTTCGACGCCACAATCACCTTCGCATTGCACAATATCACCAGCACTTGGCTGAAAAG CTGGACATGGAAATGTCTGCTCTTCTGTATATGATGAGAGAGTACCCTGGAGTTGAGGAAGAGAAGATGAGAGCAGCTAT TGGGAAGTTTGGACTGTCGGGCAAAGCGCAGATCATGCCTATGAAGAACTTATCTGATGGGCAGAGGAGCCGTGTGATAT TTGCATGGTTAGCTTATAGACAGCCTCAGATGCTACTTTTGGATGAACCAACTAATCATTTGGATATTGAAACAATTGAC TCACTGGCTGAAGCATTGAATGAATGGGATGGTGGTCTGGTGCTTGTTAGCCATGATTTTAGGCTCATAAACCAGGTAGC CCATGAGATATGGGTGTGTGAAAATCAAGCTGTGAAAAAATGGGAGGGTGGTATTATGGACTTCAAGCGACATCTCAAGG CAAAGGCTGGTTTATCTGACTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0167400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATATTTATCACCTTACCAGGGAGATTGAAGCCTCTGACATGTCTGCATTGGAAGCTGTCGTGAGCTGTGATGAGGA AAGGTTGAGATTGGAGAAAGAAGCTGAAACTTTGGCAGCACAGGATGATGGGGGTGGTGAAACTCTCGAACGTATTTATG AACGATTAGAAGCCTTGGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTACACGGTCTTGGGTTCGACAAAAAG ATGCAGGCAAAGAAGACTCGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTTTAGCACGAGCTCTATTTATCAACCC GACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAATT TTGACCGTATTATGGTTGTGATTTCACATTCCCAGGATTTTCTTAATGGTGTCTGCACGAATATCATTCACATGCAAAGC AAACAATTGAAGATGTATACTGGTAATTATGATCAATATGTTCAGACACGATCTGAACTGGAAGAGAACCAGATGAAGCA GTACAAGTGGGAGCAGGAACAGATTTCCAACATGAAAGAATACATTGCCCGATTTGGGCATGGATCAGCAAAATTAGCTC GCCAAGCTCAGAGTAAGGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGACTTACAGAGAAGGTAGCAAGAGACTCAGTT TTGGTATTCCGCTTTGTTGACGTGGGAAAACTTCCACCACCTGTGCTCCAGTTTGTTGAAGTGTCATTTGGTTACACTCC TGATAATCTCATCTACAAGAACATTGACTTTGGAGTTGATTTAGACTCCAGGATTGCTCTTGTTGGACCCAATGGAGCTG GGAAGAGTACATTACTGAAACTAATGACAGGTGAATTGGGTCCTACAGATGGCATGGTTCGACGCCACAATCACCTTCGC ATTGCACAATATCACCAGCACTTGGCTGAAAAGCTGGACATGGAAATGTCTGCTCTTCTGTATATGATGAGAGAGTACCC TGGAGTTGAGGAAGAGAAGATGAGAGCAGCTATTGGGAAGTTTGGACTGTCGGGCAAAGCGCAGATCATGCCTATGAAGA ACTTATCTGATGGGCAGAGGAGCCGTGTGATATTTGCATGGTTAGCTTATAGACAGCCTCAGATGCTACTTTTGGATGAA CCAACTAATCATTTGGATATTGAAACAATTGACTCACTGGCTGAAGCATTGAATGAATGGGATGGTGGTCTGGTGCTTGT TAGCCATGATTTTAGGCTCATAAACCAGGTAGCCCATGAGATATGGGTGTGTGAAAATCAAGCTGTGAAAAAATGGGAGG GTGGTATTATGGACTTCAAGCGACATCTCAAGGCAAAGGCTGGTTTATCTGACTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0167400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDIYHLTREIEASDMSALEAVVSCDEERLRLEKEAETLAAQDDGGGETLERIYERLEALDASTAEKRAAEILHGLGFDKK MQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEESLKNFDRIMVVISHSQDFLNGVCTNIIHMQS KQLKMYTGNYDQYVQTRSELEENQMKQYKWEQEQISNMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVARDSV LVFRFVDVGKLPPPVLQFVEVSFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGELGPTDGMVRRHNHLR IAQYHQHLAEKLDMEMSALLYMMREYPGVEEEKMRAAIGKFGLSGKAQIMPMKNLSDGQRSRVIFAWLAYRQPQMLLLDE PTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVKKWEGGIMDFKRHLKAKAGLSD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR19211
1 471 471 0.0 –
PANTHER
PTHR19211:SF108
1 471 471 0.0 –
Gene3D
G3DSA:3.40.50.300
3 209 207 9.9E-41 –
Pfam
PF00005
40 117 78 6.5E-11
IPR003439
SUPERFAMILY
SSF52540
59 194 136 3.33E-28
IPR027417
ProSitePatterns
PS00211
89 103 15 -
IPR017871
CDD
cd03221
89 162 74 1.26863E-35 –
Pfam
PF12848
156 228 73 2.0E-22
IPR032781
Coils
Coil
163 183 21 - –
Gene3D
G3DSA:3.40.50.300
225 469 245 7.9E-51 –
SUPERFAMILY
SSF52540
241 449 209 2.35E-42
IPR027417
ProSiteProfiles
PS50893
256 471 216 15.773
IPR003439
CDD
cd03221
256 447 192 1.08152E-53 –
Pfam
PF00005
272 403 132 7.5E-23
IPR003439
SMART
SM00382
281 448 168 1.7E-7
IPR003593

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016887
Molecular function ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0167400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…