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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0169600 |
| Transcript ID | LotjaGi3g1v0169600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|P93354|H2B_TOBAC Histone H2B; TrEMBL-Plants: tr|I3S6P0|I3S6P0_LOTJA Histone H2B; Found in the gene: LotjaGi3g1v0169600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:23117296..23117733) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAAATGGCAAAGGGAGACAAGAAGCCAGCGGAGAAAAAGCCAGCGGCGGCGGAGGAGAAGGCCGCGGCGGCGGAGAA GAAACCCCGGGCGGAGAAGAAGATCCCAGCGAAGGAAGGCGGTGCCGCCGGTGACAAGAAGAAGAAGAGGTCGAAGAAGA ACGTGGAAACTTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCACCCTGACATCGGAATCTCCAGCAAGGCCATG GGAATCATGAACAGCTTCATCAATGACATCTTCGAGAAGCTCGCTCAGGAGTCTTCTCGTCTTGCTCGCTACAACAAGAA GCCGACGATTACCTCCAGGGAGATTCAGACCGCCGTGAGATTGGTTCTCCCCGGCGAGCTTGCCAAGCACGCTGTGTCTG AAGGCACCAAGGCGGTTACCAAGTTTACTAGCTCTTAG
CDS sequence (LotjaGi3g1v0169600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAGGGAGACAAGAAGCCAGCGGAGAAAAAGCCAGCGGCGGCGGAGGAGAAGGCCGCGGCGGCGGAGAAGAAACC CCGGGCGGAGAAGAAGATCCCAGCGAAGGAAGGCGGTGCCGCCGGTGACAAGAAGAAGAAGAGGTCGAAGAAGAACGTGG AAACTTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCACCCTGACATCGGAATCTCCAGCAAGGCCATGGGAATC ATGAACAGCTTCATCAATGACATCTTCGAGAAGCTCGCTCAGGAGTCTTCTCGTCTTGCTCGCTACAACAAGAAGCCGAC GATTACCTCCAGGGAGATTCAGACCGCCGTGAGATTGGTTCTCCCCGGCGAGCTTGCCAAGCACGCTGTGTCTGAAGGCA CCAAGGCGGTTACCAAGTTTACTAGCTCTTAG
Protein sequence (LotjaGi3g1v0169600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGI MNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 50 | 50 | - | – | |
| PANTHER | 2 | 143 | 142 | 3.1E-82 | – | |
| Gene3D | 2 | 143 | 142 | 3.3E-58 | ||
| PANTHER | 2 | 143 | 142 | 3.1E-82 | ||
| Pfam | 6 | 119 | 114 | 8.5E-23 | ||
| SUPERFAMILY | 27 | 143 | 117 | 1.61E-52 | ||
| SMART | 46 | 142 | 97 | 1.2E-73 | ||
| PRINTS | 56 | 74 | 19 | 3.1E-49 | ||
| PRINTS | 75 | 95 | 21 | 3.1E-49 | ||
| PRINTS | 97 | 114 | 18 | 3.1E-49 | ||
| ProSitePatterns | 111 | 133 | 23 | - | ||
| PRINTS | 114 | 127 | 14 | 3.1E-49 | ||
| PRINTS | 127 | 140 | 14 | 3.1E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi3g1v0169600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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