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LotjaGi3g1v0179300.1

Overview

Field Value
Gene ID LotjaGi3g1v0179300
Transcript ID LotjaGi3g1v0179300.1
Lotus japonicus genome version Gifu v1.2
Description Trna-dihydrouridine(47) synthase [nad](P)(+)]-like protein; TAIR: AT3G49640.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|Q9NX74|DUS2L_HUMAN tRNA-dihydrouridine(20) synthase [NAD](P)+]-like; TrEMBL-Plants: tr|A0A151SZ46|A0A151SZ46_CAJCA tRNA-dihydrouridine synthase; Found in the gene: LotjaGi3g1v0179300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:24970159..24978402) extracted from Lotus japonicus Gifu genome v1.2.

GACACCAGTAAGAAAGATAGATATCAAACCCAAGTTGACAACCTCAAACCTCAATACTTGGATTCGTGGTTGGAGCCTCT CGGCGGAAGAGCTCAGGCAACGCCGCCGGAGATGGATTACCGCAACAAAATGGTTCTTGCTCCAATGGTTCGCGTTGTGA GTTCAACTTCCCTCAACCACCACCATGTTTCTTCTCATCAATTGCAGCACACCCTAAAGCACAAGTCAAATTCTCAATAA TTTTTGTTTTTGTTTGATAGGGCACTCTCCCATTGAGATTGCTAGCTCTTCAATATGGGGCTGATTACGTTTACGGCGAG GAAATCGTTGACCACAAGATTCTCAAGTGCGAACGCCGAATCAATGGTTGGTTCATTGCATCTCTCAGTTGTAGCTCTTT TTATGAATTTTTCATGCTTCTGCTTCTATACCATCAAAAAGGGTGTTTTTTTTTGGTATATATGTTGTTTAGACGAAAAA ATGGTTCTAAAGCTTAGAAAGGATGCAGAATTATGATTTCGTTTAGATATATTAACCTCATGTGATAGAAAGTTGGAAGC TTTTGGTTAGATTAATATTTAATGTTCCGTAGGATAGCTCAAGTGGTAGGAGCTGGGGGACATATGAGTTGGGTAGGGGG AGGTCCAGTGATCGATTTCTGGCGGGTGCAATTTATCTTTCTGATGTACCAAAAAAAGATTAATATTTAATGGCTTCATG TAGCATATCATAAGTTGGTAGTTTTCGAAACCGAGAGCATGTAGAGTTTGTTAGGGACAGGAAAATTAAGGATAAATGTT GGGATGCCTGCAGTGGAGTAAAGTATTGGTGATTTAGTGAGTGCAAGTTTGGTTTCTGTAGTTTGCATATTGTGTTTCTT TCCTATCACATTTAGGACTTTAATCCCCAAAGTATTACAAGGAGCTGTTTGCTGAAAGCAAAACACTCGCAACTAGCAAT TGCGGGAAGAGGAAAGTTGCTTGAAGATAGTACACTACTGCATCTTTATATTCTAACAAATAGAAGGACAGGAGGCTCGA TATTTCCTATCTTTATGTTCTTTACCTAAACTAAATGTTAGATAACTAACCCATATTAAATTCTGACATTTCAATTTTTG TTTCAATTACTACTACTTTTGGTAAAAAAAATAGTAGTTGTAGGCTCATTTGAAAAAATTTAAAACAGTAGATCAGATGC AAAATCATGATATTTTGAAGGACCAAAAGCATATTGAAGCCTTTTTAGTAGCATAGCTAGCCTTCTTTTGTTTTATAATA TTCCTAATTTTATATGTCAATAGTGGTACTTATTCACATGATGAAATAAATTTGTGTTGTCCCGTGATAATAACTTTCAA TGTTTCATTTTTTTACTTTTATTGTGGCTGGACATTTACTGCTAAGAGGTTGAGTGTAAACTTTGGCATTATCTTATCAT TCATAAGCATGTGGTGTTTTCCTCACTCTTATTTAGTTTTTAAATAAACCCATTATCTTCTTGTCAGAGCTCATTGGATC CACTGATTTTGTGGAGAAGGGGACAGAAAGTGTCGTGTTTAGAACCTGCGATCAAGAAAAAGATAGAGTTGTATTTCAAA TGGGTACATCTGATGCTGTGAGGGCTCTAGCTGCTGCTCAGTTAGTGTAAGTTAACTGTATGTTAGGTTTCCCTCTTTAC TCTTTACACTGAAGTTGTATATTTTTCAATTTTACTAATTTAAGCGACATAATCATCTTCATTGGTCATGAGGTTTTTTA TATGGTCTGTTGTCTAGTGTTATCAACTATGCAATGTAAAAGCCTGTTCAGTGTTCACATTAGGGTTGTCAATAGCACGC TATAGCGCCGTAGCGGCCCTTTGCCGCTCCTATTTGTTGCGTAGCGGTGCAGTTCAATGTTGCAGCCACTAAAGCGGAGG AAATTGCTTTAATAGAGGTGCTATTTAGTGGAATTGATAAAAACTCAAAAACAACCAACAAAAAGTTAATGTTCGGACAT TTTGGGGAGGTATTTCAGGGTTTTTGCTTTGGAAACATACTGAAAACGGTCTAGTTTGAGGAGTATGAGGAGGAAATGAT ATAGAACTTTCATGTCTTTAGGTAGTTTAGTTTATGAAATAGAGACTTAAGCTTCTTGGTTACCTTGACTTTTGTTGGTA CTAGTATGTTTTGTTTAAGACACCTATGAGTATGACTTTTTAATGTTAGTTATGAGTACAATGAAGTTTGAGCATTTTTT ATCATTTATATGTATATAGCTGTATTATATAAACTAAACAAAAAATTCAGCATAGTCCCGCTATGCATTATACTGCAATA GCATTTTTGTGGTTGGCCGCTATGCGCCGCTATCCAAGATTGACAACAACTTCACATATTACATTAAAAGAATTGCAATA TTAGTCCATAGTAATAATTGGCAGGAAGATCTTCGACACCTCTTCTATTTCCAAATATATTGCTCCAATGAGTGGCTATA CAATTCAAAGATGAAGCATGTATGTTTTCTTTCATGCACCAAGGACACTATACAAGATTGTATCATCAGGCTTTCTAACA CCAAATAAACAATTTAGTGAAGCTGTAGTTGCTTTCTTTATGTTCCTTTTCCTATGTTTATTTATGTTTCTTGGGGGTGT GGGTGGGATGGGCTTGGGTTGGGTTGCAGGTGTAATGATGTTGCTGCAATAGATATTAACATGGGTTGCCCCAAAGCATT TTCTTTGAGTGGTGGAATGGGCGCTGCACTGTTGTCCAAGCCAGAGCTTATTCATGATGTAAGTCTTATGATCTGTTGTT GTTCTGATTGTACTGCAGTAATGTATTTTAAACCTTTTTTGAAAATACAGATCTTAACAACATTAAAAAGGAATTTGAGC ATACCGGTAACATGTAAAATTCGACTTCTAAGCGAACGACATGATACGGTGGAATTAGCCAAGCGAATTGAGAAAACTGG TGTTTCTGCTCTTGCAGTTCATGGAAGGTAATCTCCAGTTTTTGTCTCATTTTCCTGGATGGAATCTTGCTTTTAATTTT ACAAGGCAGTCATTTTCAAATCAGTCAATAACAACCAACCAAAAAACATTATCGTACTAGTTGGTTACAACTTGCATAGA TCCGTTGATGCCATTTGGGTCACATTATGTACTGTTTACATAATAAAATCTTCGTCTTTTATCTTGGCTTGAGGCACTAA TGTTTGTGAAAAGAGCATGACATTGAGTTAATTGTTCTCAAATCAAGTAAAGCCGGATAATGACTTTCTTGGCGTGCAAC TCTTTCGTGATAAAGGTATTTATCAAACAATTAGGATGTGGGTAACAATCTATCTTGACACTATTTTGTTAGAATATCTA CAACAAACTGCTAACTGCCCTTACAATGAGCTACTGACTGCTAACAACCCTTACCATGAGCTACTAACAGTAATAATAGA TTTCCGTACTTATTCCATTGGGCCTTATTATGCCTAGGCACATGCCCTTTTCTTCTAAAATTTTTCAAGTAAAGGTTATC ATAAAGCTTCAACCAGCAAAAATCGAGGAAGTAATCGACAAAAAAAGGTATGAGAGGCTTGTTGGGAGACTGATTTATCT CTCGTACCTGTACAGAGATTACCATTTACCTTTGTAGTTTGTGTGGTAAGCCAATTTATGCACTCACCTAGTATTGAACA CTTTGAAGCGGTGACTATTGAATAGGATCCTAATGTACCTAAAGGGAACTTAAGGAAGAGGATTGTTGTACAACCTCCAT CTGCCACTGCAAATGCCTTCACATGTGCTTTGTTGGCTCCGCCAGTTTCTCCATGCTCTGGCGTCTAAGAGTACGTGCAC CTCCGGCCATCTACTTTCTACCTACCACATCATGTAAAGATGCAAATAGGGTTTTGGAAGTGTGTTTAACACAGTTATTC AGTTTGTAATTATACGCTAATTACAAACATTATTTCCTAAGCACAAGTTTCTATACACCTATTAGTACAATGCACATGTG AACAATGAGTTTCTATTCTAGCACGATTTTCGGTTAGGGCTTATTTTCCAAGGTGGAAATTTTACGCATTGGAAACTGAA AAACTAACATGGCATTTATGAACACCTATCCCCAAAGTTTAAGCTACAAGATGAAAGCACATAAATAGTTTTATATCTAG CATGTCTTCTCATGCAAGAGCGCTTTGGGCTTGAAGTGTGGATAAAGCACAAGCCCACCCAATCTTGTGTTGAAGTTTAG CCCTATTTAGAACAATGAGGGCAACAAGGATAGAGTTTTGGATCACTTAGACATAGAAGCTTTAATGCCACATTAGAAAC AAACTACCAAAAGCTTAAGCTGTTATGTGAAATCACATGAATGTTCTTGTCTAACATGACATGTGCATTTACAAGCACGA CTAATGTATTACAGTTAGATCACTAATATGGGTATTCTTATTTAATCTTTCTTGCATTAATCATTCATGCCTCACTTTTT TCATTTAAATCTATTTACAGAAGAGTCCTAGATAGGCCTAGAGATCCTGCAAAGTGGGCCGAAATTGCTGATGTTGTGTC AGCATTATCTATTCCAGTTATAGCAAATGGGGATGTCTTTGAGTACGATGATTTTCAACGCATTAAATCCGCAACAGGTA GCTGAAAAGAATTCTTCAGTAACTAATTTTTCATTTATTTGTTGGAATGGTAGAGACTGTGCAGTGAAACAACTTCCAAT TTAGTTTATTTTTATTATATATTTCAGAGAGCAGAGTTGCCTCATCTGTATTTATGTTGCAACCCAATATTTCCGTGTTG TTAATGTGTTCTCTAGAGTGCAATTAAAACACTTGACAAAATGCAACTCATTCGCTTTTGGAAAGTGAGGAAATGAATCA AAGCTAACAAGTTTCTTTCTCGATGACATTATAAACTACACAATCCTTGCTATCCTAAGGCCATGATAGATTCCCCTCGA TTCTGCAGGAATGATTGGGGATATCCCTAGGCTTAGCCTTGGATCAAGCCTCTACATCGAATACTATTGGTAATCTACGC ATTCCCATTTGTGTTAGCTTGAATTGATCCCCCTCTCATGGAAAGCTTCAAGTGATAGTTCGTCCTTATGATAACACTTG GACAATGTAGCCTAGAGATTGAGGAGTGTGATTTCATAATATGTAGACATTTCTATTCTAAACTATACATTAAATATGGA AAACAAACTATAGACTATAATAGCTCCAATGCAGCTGTTAGAAGCTTTAGAAAATCCAAGACTTTAAAAGTAACTCTGAA GGGAGTGAATGGGGTAGGTGCTGCCGTGGTGGTGGTGGGATGATTGTCAACATTGATTATATATATGATGTGGCTTACCC CGGCTTATAAGGCATTGTATGTTACTCATGAGCCCATGAAAATAACTTAGAAAGCTCGTCGAAATCAGATCAAAGGAAAG TTGGCCTAATGATTTGCACATAAAGCCTTGAGTGAAGAAAGGTTTCAGTTTTTGTTGCATTTGATGGGAATTTATTTTTT TATCTAGGTGATTACTTTTGTATTTACTATGCAATAATATTCATTTTTATTATTCATCATGATATATTAGCTATTCATTT TCTTATGTTTAATTTCTAATTGACACTAGTTTTGTTATAAGGTGCCTCATCAGTGATGGTTGCTAGAGGGGCACTCTGGA ATGCTTCAATATTTTCACCTGAAGGCGAAGTTTCTTATGAAGTTGTGAAAAGAGAATATATTAGGAAGGTAATATTTTTC TTTGTTCTAAATCAACTATAGTTCACATTTATGACCTTTCATTGTTTACCTTGAGATGCGTGACAATCTAATGAATAGAC AGTTTGTAGACCCAGATAGACTAGTTATTTCTCAGTCTAGTGATATTTCAAATTTAAAAGAATGGATTTATATATTCTCA TTCTCATATTGGGAGATGTCTTTGGGCTTTTGGGTGTCATGGTCACTAACTACTAAATGTTGTTGTTTCTAATTTCCATT TCAGTGCTTCTTGTGGGATAACGATATTAGAAGCACCAAGCATACATTAAGGGAAATGTTAACCCGTTATTCTAATCTTG GACTCCCTGAATGGAAGGCTATAGTCAAATCCGAATCCAGTGCAGATCTAGCGTATGTTCTTCTTTCTTTATTGCTAAAC TGGTTGCTTGCATATGTGTTAGGTACTTACGTGTTGACTGCGAAAATCTTTTCCTGTTCGTTGATCACATGCTTCGTAAA CTCCCATGCATTTTAGTGACTTTAAACCATGCCATTTGTAGACAAATAAATAAACAACATCAAAAGTTTTCCAACTAGAT GGGTGAGCTACATGGATCCAAGTATCCAACAACAGCCAATACCATAATATCCTGTCATGAATCAAGTTTACTTACTCTAT AGTACTTAATGATTTAGTCTATATTACGTATTGGTCTCCTCTCCATATCCAACAACAGCCAATACCATAATACCCTCCTT ATTAGTGCTTCTACATGTATTCTCCATACATGTCCAAACCACTTAATACTAGATTCAATCATTGCTTCTACAATGGGGGC TACTTTGACTTCTAGTTTATCGATACTATTCTTAATCTTGTCTTATATAACTATTATCCATTTGCTACATTATCATCTCT GCAACATTTAGTTTACTTTCTTGTTGGCTCTTCATTGTTTTACATTCACTTCACTCAACATTGCTGGTTGAATTACACCC AATTTTAAATCACACCCCAAGCAATAGCATTGCTTCCTTTTACCCACTCTACTGGAACCCTATGGTTGACATCTGCCATA AACCAAATATTCCAATAGTTTAAGCTGTTAGGTGAAGACACATTGGCATGAGCTATTGAATTCTAATAACTAACAGTAGA TATGCTGACTAAATATATTCAAAAGGTTGAGAGTTAATCTCTTCAGCAATTTGGTCGATTCTTAGCCTTTTTCTCAAGTC TTGTCAGTTTTCAGATGGTCTGAGAAAAATGATTTTCTTTGCTTCCATGTGGCCATAAAAATTAGTCCTCTACTGTCAGC TGGTATTCTCTGCAGAGTATGCACACTCCATATATGGTGATCCGAAAGTTATACTAACCCCCCCCCCCCCCCCCCCCCTT TTTCTTTAAGAAAACTAATTAAACATTAACAATGTAAATAAGTTGCTTTAAAGAAAGTAAATAAGTTTTCCACAAACATA TAATATATTTGACCATCTTACTTTTTTTTTTGGTAATCAATTTTGATATAGTAAGATGCATTTCCAATGTGATTGGACAT TTGTATAGAATTTATTTACTGTTAAGTGTATGATTAGCAACTTTTTAAAATTACCGTTTTGATTATTATCTCTCGAGTAA CTTGATTCCTCCTCATGTATAAATAATGAGAGTTAATCAATAGTGTTGTCACTGGCTTCACAGTATGTTGTTTTTTCTTA TATGTACGATGTACTCTAATATTTCAGGGAACTCTACGGAATGGGAGACTATTACCGATTAGTAAAATCCGGTTCCTCCG AAGCATTCAGATAATGCTTTTGTTGACACATCAAAATTTACAGGGTTATAACATGCTAGGTCGGGTTTAGGGTTATGTCA CCTCCCAGCTTAGGAAGCACCGGCAAGAAATTCAAGTCACCGATCGAAGACACTCAAATCATATTCAAGTTGTCATTTAA GGAGGCAACCAGATGAGCTAAATCATGTTGTTCTCTTTCATTGAACTGTAATATTTTTTGGACATGTTATTCATAGTAAA ATATAAACAAAATATGCTGATTCAATATTCGACCCCAGATTTTATAATTACCCAAGAAAAATTTGACTGTATTAATATTA TAGTTGGTACAATTTATTCAACCTATATTTTTCTCGTTTTTGCTGTCAATGGCTGTTCAATGAACATAAAATAAGGATAT ATTATTTCAAATTCAGTTTCACTTTTACCTCAGTTGAGTTGAACCCCTCTAACCATACAGGAAACAATGTCATTTCTTCA CTTTTTTTATGTCTTGGGATATATGATTAAACATGATATATATAATATATGTCGAGCAAGTGGATCCCTTCCCCATCAAA CTCGAGGAAGATTACGAGAAATATTATATCATACAAGATTAATACATTCAAGTAGATCAAATAATTTCAAATCAAATTAA GTATCAAATGCATATTAGATGTTTTTGTGTGTGTAAGTCAGGTCCTCCTTCGTAGGAAATCATGTTCGAGCTGGAAACAT TCAC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0179300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATTACCGCAACAAAATGGTTCTTGCTCCAATGGTTCGCGTTGGCACTCTCCCATTGAGATTGCTAGCTCTTCAATA TGGGGCTGATTACGTTTACGGCGAGGAAATCGTTGACCACAAGATTCTCAAGTGCGAACGCCGAATCAATGAGCTCATTG GATCCACTGATTTTGTGGAGAAGGGGACAGAAAGTGTCGTGTTTAGAACCTGCGATCAAGAAAAAGATAGAGTTGTATTT CAAATGGGTACATCTGATGCTGTGAGGGCTCTAGCTGCTGCTCAGTTAGTGTGTAATGATGTTGCTGCAATAGATATTAA CATGGGTTGCCCCAAAGCATTTTCTTTGAGTGGTGGAATGGGCGCTGCACTGTTGTCCAAGCCAGAGCTTATTCATGATA TCTTAACAACATTAAAAAGGAATTTGAGCATACCGGTAACATGTAAAATTCGACTTCTAAGCGAACGACATGATACGGTG GAATTAGCCAAGCGAATTGAGAAAACTGGTGTTTCTGCTCTTGCAGTTCATGGAAGAAGAGTCCTAGATAGGCCTAGAGA TCCTGCAAAGTGGGCCGAAATTGCTGATGTTGTGTCAGCATTATCTATTCCAGTTATAGCAAATGGGGATGTCTTTGAGT ACGATGATTTTCAACGCATTAAATCCGCAACAGGTGCCTCATCAGTGATGGTTGCTAGAGGGGCACTCTGGAATGCTTCA ATATTTTCACCTGAAGGCGAAGTTTCTTATGAAGTTGTGAAAAGAGAATATATTAGGAAGTGCTTCTTGTGGGATAACGA TATTAGAAGCACCAAGCATACATTAAGGGAAATGTTAACCCGTTATTCTAATCTTGGACTCCCTGAATGGAAGGCTATAG TCAAATCCGAATCCAGTGCAGATCTAGCGGAACTCTACGGAATGGGAGACTATTACCGATTAGTAAAATCCGGTTCCTCC GAAGCATTCAGATAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0179300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDYRNKMVLAPMVRVGTLPLRLLALQYGADYVYGEEIVDHKILKCERRINELIGSTDFVEKGTESVVFRTCDQEKDRVVF QMGTSDAVRALAAAQLVCNDVAAIDINMGCPKAFSLSGGMGAALLSKPELIHDILTTLKRNLSIPVTCKIRLLSERHDTV ELAKRIEKTGVSALAVHGRRVLDRPRDPAKWAEIADVVSALSIPVIANGDVFEYDDFQRIKSATGASSVMVARGALWNAS IFSPEGEVSYEVVKREYIRKCFLWDNDIRSTKHTLREMLTRYSNLGLPEWKAIVKSESSADLAELYGMGDYYRLVKSGSS EAFR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45936
1 317 317 8.4E-153 –
Phobius
SIGNAL_PEPTIDE
1 34 34 - –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 14 14 - –
Gene3D
G3DSA:3.20.20.70
2 251 250 1.3E-73
IPR013785
SUPERFAMILY
SSF51395
5 281 277 1.63E-64 –
CDD
cd02801
6 247 242 2.56524E-97
IPR035587
Pfam
PF01207
8 246 239 5.5E-57
IPR001269
Phobius
SIGNAL_PEPTIDE_H_REGION
15 25 11 - –
Phobius
SIGNAL_PEPTIDE_C_REGION
26 34 9 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
35 324 290 - –
ProSitePatterns
PS01136
104 122 19 -
IPR018517

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0008033
Biological process TRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
Subterm of
GO:0017150
Molecular function TRNA dihydrouridine synthase activity Catalysis of the reaction: tRNA-uracil + acceptor = tRNA-dihydrouridine + reduced acceptor.
Subterm of
GO:0050660
Molecular function Flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0179300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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