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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0180400 |
| Transcript ID | LotjaGi3g1v0180400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT2G35030.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030, mitochondrial; TrEMBL-Plants: tr|A0A1J7IQC4|A0A1J7IQC4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0180400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25101376..25107548) extracted from Lotus japonicus Gifu genome v1.2.
ACGAAATTGAAAACGCTTTGTAAAAAAAACTTCCTTTCACCAACGCAACCCAATGGCGAAGAAGTTACCTCCATTATCAT TCATATTGATGCATGCTCACAAGCTTAACACGCACCCACTCATACATGGGTACCCATTCCTCAGGACCAGGTTAGCATCC ACGTTCAGTCTCAACACTGAAATGAAGCGCTGCAATTCCTTCATCTCAAGGCTTTGCAAGGAAGGGAGAACCGACCATGC ACGCAAGGTGTTTGATCAAATGCCTGAACGGGACATGCGTCTGTGGGATACAATGATAAATGGGTATATCAAGTGTGGCA TGATTAAGGAAGCCAGGAAGCTGTTTGATCAAATGGCTGAACGGGACACGCGTCTGTGGACTACAATGTTAAATGGGTAT ATTGAGTGTGGCATGATTAAGGAAGCCAGGAAGCTGTTTGATGGGCCGGATGCCGAGAAAAGTGTGTCTACGTGGAGTAC TATGGTTAATGGGTACGTCAAGATCAATCAGATTGAGGAAGCTGAGAGATTGTTTTATGAGATGCCAGAGAGAAAGGATG TGTCTTGGAACATAATGATGGGTGGGTATGGACAAAATGGCCAAATTGAGAAGGCTTTGGATTTGTTTAGGAGAATGCCG GAGCCGGAGCGGAATGTAGTTTCTTGGAATACAATCATTAAGGCCTTGGTACGGTGTGGGAGGATTGAGGATGCTCAATG GCATTTTAATCAGATGCAGGAAAGGGAAAGGGATGTGAGTTCCTGGACTACCATGGTTGATGGTTTGGCAAAAAGTGGGA GAATTGATGATGCTCGAGCTCTTTTTGATAGGATGCCGTTTCGAAATGTGGTTTCTTGGAATGCGATGGTCACGGGTTAT GCTCTAAATAGAAGGTTGGATGAGGCTTTAGAGTTGTTTGAGAGGATGCCTGAGAGAGATATGGCTTCATGGAATGCAAT TATCACTGGGTTCTTTCAAAATGGAGAACTAAACAGGGCTGAGAAATTATTTGCTGAATTGCCACAAAAGAATGTGATTA CTTGGACTGCTATGATGACAGGGTATGCCCAACATGGTCTAAGTGAAGAAGCGTTGAAAATATTTAACAAAATGCAAGCT AGTGGTGGGTTAAAACCCAACAGTGGAACTTTTGTGACCGTGTTAGGTGCTTGTAGTGACTTAGCTGGTCTCACCGAGGG CCAACAAATTCATCAATTAATAAGTAAAACAGGTTTTCAGGACAACACGCGTGTGGTATCAGCGCTTATAAATATGTACT CAAAATGTGGGGAGTTGCATATTGCTAGGAAGATCTTTGATGATGGGTTATTGAGGCAAAGGGATTTGATATCTTGGAAT GGTATGATTGCCGCCTATGCGCACCATGGATACGGAAATGAGGCTATTAATCTATTTAATAAAATGCAAGAATTAGGTTT CCAACCTAATGATGTCACCTATGTTGAACTTCTCACAGCTTGCAGTCATGCTGGATTAGTTGAGGAGGGGCTTCAGTACT TTTCTAAGCTTCTGAAAAACAGATCTATTCGAGTCAGAGAAGCTCACTATGCATGTCTGGTTGATCTTTGTGGTCGTGCA GGAAGATTGAAAGAAGCTTTCAATATAATTGAGGGGCTTGGGGTAGAGTTATCATTGTCTGTTTGGGGACCACTCCTTGC TGGATGTAGTGTGCACGGAAATGCTGATATTGGGAAGCTTGTAGCTAAGAAAATTTTGAAAATTGAACCTGAAAGTGCAG GCACTTATTCATTACTCTCAAATATGTATGCCTCAGCAGGGAAGTGGAAAGAAGCTGCCAATGTTAGGATGAAAATGAAG GACAAGGGGTTAAAGAAACAGCCAGGTTGTAGTTGGATTGAAGTTGGTAATACAGTGCAAGTATTTGTAGTTGGTGATAA GTCGCATTCTCAATCGGAGATGCTAGGATATTTACTACTTGATCTACATACAAAAATGAAGAAGTCCGGGGACATTCTAG ATGATGATTTATCACTTGATGTGGAACTTTAATGGCATAATTCTGTCTGGGCCAGAGCGTGCATTGTCCGTGGGAGTTGA AATGTGGGAAAGTTTACTGCTGCTGGTGTTGGGAAAGCATGAGACCGTCGGTGTAGACGATGAATATTGAAGACCCTTAC AATCAAGATGGAGATTTTGGGGTTGATTACATGTAAGTCCCAAATTGTCAATTAAATTACTGAAAGAGGGATTTATTAGC TCAGTCTCACTATGTTTTTTATTCTGATGGTGAGTTTAATTAGCACTGAGATACTACGGCAAAAGAAAAGCGAACTCTTC CTTCACCGAAATTCCCTAAAAAAAAAAATAGGCTACAAATATATCTGAATAGCCGAATAAAGGAATTTTGGGCTTTGATT TGAACCAACGCTCATCAACGGAAGACTGTGAATAACTCACGCAGTAAAGCAAAACTTGACCTAAATATTGTATATATTCC TTTGTCACTGAATGTTGTAGTTGTACCTACTGATGGTTTTTTCCTAATACAGTAATAGCTCATGGATCTCTCACAAAACA AGGAGTAGAAGCAGGCATTGAGAAAAAGCATTCTAAGGGAACTTGCTGATGATTTGAGAGCTCAGGTAATATCATCCTAC ATGAGAGTAAGAAACAAACAAACATCTTTTCATTATTTTTCAATTTTCTTTTTGTTTATGGTTGTTATAAGATTGTGGAA TAACTTTTCATGAGGAAACTAAATGTTAAGCTTCGTAATTTGAAGATATATGGTTAAATTGGTTTGTGTTTTTCACTAAG TGATTGTGTATCATCTCTACACTACAAATTAAAAGGGGATTAAAAAAGTGCAGCCAATTATCCATACAAGTTGTTTAGTG CGTAATACTCAGGCATTTGGATATTGTAAGACATCCTTTCTTTCAAATTGGAGAACCTGCATTTGAAATTTAAAATGGCT TTTGATTTAAACAATAGAATGGTATACCTTATGATCTTTTACTTTTTCCTTTTTTATTGTACTTGATGAATGTAATACAA TGCAAATTAAAGACTTGCTGATTTTTCTGTGTCCTTTTTATTTTTCAAATTTCATAACCCCGTCATTTATATTAATTATA AACATAACTTTTCCAGATCATGGAAGAAAGACCTGCATTATCTGACCCTGTCAGTGATGGACATGTTTTAGTGCAGTTTT ATGGAAATAATGGTACCCTCTATCTTTCTACACGGGAGTTTCTTGGATTTTTCTAACCCTGTAATGAATCACACTTTGTT GCTTTACACTTTACAGTTCTTGGATTGATCAAGTCACAGATATTTCAACCTTTGAGGATATGAGTTCAATCCTTGTCTTG CACTCCGCTTTTGCAGCTATAAGTTCAGGGTGTTAAGAAGTCTGTAGCTTATATATACATTTTGATAACATTTAATATCT GAGTAAAGCCGTGCTAGAAGAGGGAGTAGATAGAATACGTCATCCTCAACCTAAAAGGAAGAAAGAAGAGGGCAAAAAGA GGCTTATTTTGACTAATTTTAATTTTGCTAAGATGTTGCTCAGCAATTTGTCTCCCAACTTCTGTAGTGGGCCATCAAGA AAGTGTTATAGGCTTATAGCATGCAATTTAACCACAACTTTTAGATACATCATATCTGCTGCATATCACGATATGCTGGA GTTGGAAAAGATGAGAAACATTACTTATAGGTGTTTCTTAATTAATGTTCAAGACCCTTCGTTTATTGTCTTAATAATTT TTGTATCCACGAGATTGTGTTAAGAGATTTTCAGATTTTTTTCCAGATTTTTCCTGAAGAATCTACAAATTAGAATAGGA TAATCCAAGGCCTGGTCACTCTCTAGGCATAAACAATCTGCATTAAAGACATATTTTGACAGGATCATCTATGGTCTGTT TGTTTTTCTTAGCTTTTCCTGACCTGCAATCTATTTGTGGAGCCAAGTTGTTGGGAGCAAAACTAAGATAATTTGGATTG GCAATAATGAGATGAAGAGAGAACATATAGTTCTTATTTGAATTTGTTTGGTTCTTATTTTTTATATGACAGAGATTGTT TACCAGGATTGGACATTATGTGTCTTTCACTCTATGCAAGGAGTTGCAATGTCAAAATAAAATTTTGATTTGTTAAGGGA AGATATGGTGGCAAAGGATGAAGTAGATTGTAGAAAACCAAAGGCGTCGTCAAAGTCCTCCAAGTTTTGGGAACTGCATA GAAGGTGCTCTTTTCTTTAGGCATCTTTAATTATTAGAGCTTTTGAAAGATGTGTATTTTTCTGTTGGAGGTGGAGATTA TGTGATCTGTTTTGGCCTGCTTGATTGATTCATAAACAGGACAACCATCTCAATTTGGTCTCAGATATGATGCTTTTTCG TTGTTCCATTATAATCTATCTAGGGGATCTTTGGAAAATCATGCTTTAGTGTGTGGTTGTTATATCTGTCTTGGTAGTGT TACTGAGTGCATATGAAAATATGTACTTTTGTTATATGTGGTGATGTTGTGTTGATCTTAGATTCAGGGGACATTAATTT TATCTGTGTGGAGTACTATTGAATTACCTATCCAATAAGAAGTTTGTTCTCACAAAAATAATTGAGAGTCTCTGGTTTAA GTGCTACTGGAATGGTTGCTCAATTGCAAAAGTGTACCCATTCATCTTCTCTACTCTGGTCTTTTGTTTTCTGCTATCAT ACAATGTTTTGATTTATTTTTCCTTTTCTTTTGGTCATGCTTTTAGAACTATGATGAAAGCAATGGAACAAGAGTTTTTT AATGGGTTAAATTTTATGCTTTTAACATCTGCAAAATAAATGAGTAGGGTGAATAAGTTTTCTGCTGTTAAGATGTCAAT AAGTTGACTGTCAGGCTTAAGCTTAATGGACTACTTTTTATGGATTTGTCCTACTCATTGTCCTTTTTGATGTGGATCAT ATCTAAGATGACCTTTACCTCTTAACTAATTTCAGCTTCAAAGAAGGATAGACATTATCTTCGCTACCAAATAGAAGTTG AGTGAAAGTTAAAAGATTTAACATTTTCCAGTGAAAATGAGATGCTTAAAGACACTGCAATCTTCTCAAGATCATATTTG TCATCTCAAGTGTTGATCTTCAAGGTAATGGCCCTGTGCTTTTTGAATGCTTGAAGCAAATTGAAATCCTATTCCTATAG ACCATGCAACCAACATGTTAAAGATGTACCTGCCGCTACTTCAATCAGTTTTAATTATATTTTTTGTTAAATTCATTCTT TTATCGATCTATTTTGTAGTCAGTTTCTTCTGAAAACCGTGATCAAATTTGGTGTTAGATTCCTTCTCTTGAAGGTAAGA ACTTAGAGTAGTAGCCAGCTCAAAGTCATTGAAGGATGAAATCTTGGGCTTATCTGCTTGCTTTGTCTTTGCAGGCTGCA TATAATGTTCCATTTCTGATGCTTAGAAATACTATACCCAGATTGGAGCTTTCATCTCCACCCAAATCAAATCTCATTCA TTCCAATCACCATACCACATGATGGTCTTCTTGCTGGCTCTGAAACAACTGCAGACTTTCCTTCCTCAGTGCATTCTCGT CTTATGACTGCAATGGACCTCACTAAGCCTAAAATTTAAGGTTGTCTAAGAGAGCAAAGATCTCATATGGTATTTTTTTA TTTCACATATTGGTTTACCTGCATTAGCATGTAGTGACAATCTTAATGGACAATGATATTGAAGAGGCACAACTAGTAGA GTATGATGATGGAATAGAAGAACTAGCTTTATTGTAAGATAAGTGTTCGTAGAAATGCTTAGGAGAGGAAGTAACCCGAG AAGGGTTTTCTCTGACTGGTGTGGCTTTGTGTGATGTGTTCCTTCTATCTGGTGTGGCTTTCTGTTGCTTTGTGCTGGTT TTCTGTAGGTGATTCTTGGCTGTGTTAGCTTCTTTTCTGCCTTAGCATTGTGTACCCCTTTTATAAGGAGTAGCTTATTT TCCAAATTGTGCCACATTTTGTTTTGCTGCTGCCCAGTTCATTTGCATTGCTATCGAGGAAGCCATGATGCCCGTTACCT TTCTTTCCTTGTCTTGGGACCATGGCTGTTTTGTTAGAGGGCTATTGTACTCTTAGTATATAATACTTTAAGCTGGTTAT TGGTTACTATCGC
CDS sequence (LotjaGi3g1v0180400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAGAAGTTACCTCCATTATCATTCATATTGATGCATGCTCACAAGCTTAACACGCACCCACTCATACATGGGTA CCCATTCCTCAGGACCAGGTTAGCATCCACGTTCAGTCTCAACACTGAAATGAAGCGCTGCAATTCCTTCATCTCAAGGC TTTGCAAGGAAGGGAGAACCGACCATGCACGCAAGGTGTTTGATCAAATGCCTGAACGGGACATGCGTCTGTGGGATACA ATGATAAATGGGTATATCAAGTGTGGCATGATTAAGGAAGCCAGGAAGCTGTTTGATCAAATGGCTGAACGGGACACGCG TCTGTGGACTACAATGTTAAATGGGTATATTGAGTGTGGCATGATTAAGGAAGCCAGGAAGCTGTTTGATGGGCCGGATG CCGAGAAAAGTGTGTCTACGTGGAGTACTATGGTTAATGGGTACGTCAAGATCAATCAGATTGAGGAAGCTGAGAGATTG TTTTATGAGATGCCAGAGAGAAAGGATGTGTCTTGGAACATAATGATGGGTGGGTATGGACAAAATGGCCAAATTGAGAA GGCTTTGGATTTGTTTAGGAGAATGCCGGAGCCGGAGCGGAATGTAGTTTCTTGGAATACAATCATTAAGGCCTTGGTAC GGTGTGGGAGGATTGAGGATGCTCAATGGCATTTTAATCAGATGCAGGAAAGGGAAAGGGATGTGAGTTCCTGGACTACC ATGGTTGATGGTTTGGCAAAAAGTGGGAGAATTGATGATGCTCGAGCTCTTTTTGATAGGATGCCGTTTCGAAATGTGGT TTCTTGGAATGCGATGGTCACGGGTTATGCTCTAAATAGAAGGTTGGATGAGGCTTTAGAGTTGTTTGAGAGGATGCCTG AGAGAGATATGGCTTCATGGAATGCAATTATCACTGGGTTCTTTCAAAATGGAGAACTAAACAGGGCTGAGAAATTATTT GCTGAATTGCCACAAAAGAATGTGATTACTTGGACTGCTATGATGACAGGGTATGCCCAACATGGTCTAAGTGAAGAAGC GTTGAAAATATTTAACAAAATGCAAGCTAGTGGTGGGTTAAAACCCAACAGTGGAACTTTTGTGACCGTGTTAGGTGCTT GTAGTGACTTAGCTGGTCTCACCGAGGGCCAACAAATTCATCAATTAATAAGTAAAACAGGTTTTCAGGACAACACGCGT GTGGTATCAGCGCTTATAAATATGTACTCAAAATGTGGGGAGTTGCATATTGCTAGGAAGATCTTTGATGATGGGTTATT GAGGCAAAGGGATTTGATATCTTGGAATGGTATGATTGCCGCCTATGCGCACCATGGATACGGAAATGAGGCTATTAATC TATTTAATAAAATGCAAGAATTAGGTTTCCAACCTAATGATGTCACCTATGTTGAACTTCTCACAGCTTGCAGTCATGCT GGATTAGTTGAGGAGGGGCTTCAGTACTTTTCTAAGCTTCTGAAAAACAGATCTATTCGAGTCAGAGAAGCTCACTATGC ATGTCTGGTTGATCTTTGTGGTCGTGCAGGAAGATTGAAAGAAGCTTTCAATATAATTGAGGGGCTTGGGGTAGAGTTAT CATTGTCTGTTTGGGGACCACTCCTTGCTGGATGTAGTGTGCACGGAAATGCTGATATTGGGAAGCTTGTAGCTAAGAAA ATTTTGAAAATTGAACCTGAAAGTGCAGGCACTTATTCATTACTCTCAAATATGTATGCCTCAGCAGGGAAGTGGAAAGA AGCTGCCAATGTTAGGATGAAAATGAAGGACAAGGGGTTAAAGAAACAGCCAGGTTGTAGTTGGATTGAAGTTGGTAATA CAGTGCAAGTATTTGTAGTTGGTGATAAGTCGCATTCTCAATCGGAGATGCTAGGATATTTACTACTTGATCTACATACA AAAATGAAGAAGTCCGGGGACATTCTAGATGATGATTTATCACTTGATGTGGAACTTTAA
Protein sequence (LotjaGi3g1v0180400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKLPPLSFILMHAHKLNTHPLIHGYPFLRTRLASTFSLNTEMKRCNSFISRLCKEGRTDHARKVFDQMPERDMRLWDT MINGYIKCGMIKEARKLFDQMAERDTRLWTTMLNGYIECGMIKEARKLFDGPDAEKSVSTWSTMVNGYVKINQIEEAERL FYEMPERKDVSWNIMMGGYGQNGQIEKALDLFRRMPEPERNVVSWNTIIKALVRCGRIEDAQWHFNQMQERERDVSSWTT MVDGLAKSGRIDDARALFDRMPFRNVVSWNAMVTGYALNRRLDEALELFERMPERDMASWNAIITGFFQNGELNRAEKLF AELPQKNVITWTAMMTGYAQHGLSEEALKIFNKMQASGGLKPNSGTFVTVLGACSDLAGLTEGQQIHQLISKTGFQDNTR VVSALINMYSKCGELHIARKIFDDGLLRQRDLISWNGMIAAYAHHGYGNEAINLFNKMQELGFQPNDVTYVELLTACSHA GLVEEGLQYFSKLLKNRSIRVREAHYACLVDLCGRAGRLKEAFNIIEGLGVELSLSVWGPLLAGCSVHGNADIGKLVAKK ILKIEPESAGTYSLLSNMYASAGKWKEAANVRMKMKDKGLKKQPGCSWIEVGNTVQVFVVGDKSHSQSEMLGYLLLDLHT KMKKSGDILDDDLSLDVEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 130 | 107 | 4.9E-127 | – | |
| Gene3D | 31 | 133 | 103 | 3.0E-24 | ||
| ProSiteProfiles | 43 | 73 | 31 | 8.966 | ||
| TIGRFAM | 47 | 75 | 29 | 9.5E-7 | ||
| Pfam | 48 | 71 | 24 | 1.2E-5 | ||
| SUPERFAMILY | 54 | 260 | 207 | 1.71E-6 | ||
| ProSiteProfiles | 74 | 108 | 35 | 11.498 | ||
| TIGRFAM | 77 | 105 | 29 | 1.2E-6 | ||
| Pfam | 78 | 104 | 27 | 7.0E-7 | ||
| TIGRFAM | 108 | 130 | 23 | 0.0017 | ||
| Pfam | 109 | 130 | 22 | 6.7E-4 | ||
| PANTHER | 110 | 166 | 57 | 4.9E-127 | – | |
| Gene3D | 134 | 231 | 98 | 2.3E-24 | ||
| ProSiteProfiles | 137 | 171 | 35 | 10.654 | ||
| Pfam | 139 | 167 | 29 | 3.6E-7 | ||
| TIGRFAM | 140 | 167 | 28 | 1.0E-6 | ||
| PANTHER | 170 | 257 | 88 | 4.9E-127 | – | |
| Pfam | 170 | 196 | 27 | 8.4E-9 | ||
| TIGRFAM | 170 | 196 | 27 | 4.9E-8 | ||
| ProSiteProfiles | 172 | 198 | 27 | 7.563 | ||
| SUPERFAMILY | 179 | 298 | 120 | 8.43E-7 | ||
| ProSiteProfiles | 201 | 235 | 35 | 10.698 | ||
| Pfam | 203 | 231 | 29 | 7.9E-6 | ||
| Gene3D | 232 | 295 | 64 | 2.2E-17 | ||
| Pfam | 233 | 261 | 29 | 5.0E-7 | ||
| ProSiteProfiles | 236 | 264 | 29 | 7.64 | ||
| TIGRFAM | 237 | 266 | 30 | 5.5E-7 | ||
| PANTHER | 239 | 292 | 54 | 4.9E-127 | – | |
| ProSiteProfiles | 265 | 299 | 35 | 12.09 | ||
| TIGRFAM | 267 | 296 | 30 | 5.7E-7 | ||
| Pfam | 267 | 296 | 30 | 3.3E-8 | ||
| SUPERFAMILY | 277 | 591 | 315 | 3.45E-6 | ||
| Gene3D | 296 | 377 | 82 | 1.5E-20 | ||
| TIGRFAM | 299 | 325 | 27 | 0.001 | ||
| ProSiteProfiles | 300 | 326 | 27 | 6.182 | ||
| PANTHER | 301 | 388 | 88 | 4.9E-127 | – | |
| Pfam | 326 | 374 | 49 | 6.2E-13 | ||
| ProSiteProfiles | 327 | 361 | 35 | 11.345 | ||
| TIGRFAM | 329 | 363 | 35 | 2.6E-8 | ||
| ProSiteProfiles | 363 | 397 | 35 | 6.073 | ||
| Gene3D | 378 | 495 | 118 | 4.4E-28 | ||
| PANTHER | 382 | 598 | 217 | 4.9E-127 | – | |
| ProSiteProfiles | 398 | 429 | 32 | 6.785 | ||
| Pfam | 403 | 424 | 22 | 0.25 | ||
| Pfam | 431 | 478 | 48 | 8.3E-12 | ||
| ProSiteProfiles | 431 | 465 | 35 | 12.123 | ||
| TIGRFAM | 433 | 466 | 34 | 1.2E-7 | ||
| ProSiteProfiles | 466 | 501 | 36 | 8.276 | ||
| Gene3D | 496 | 629 | 134 | 3.0E-14 | ||
| ProSiteProfiles | 502 | 532 | 31 | 6.138 | ||
| Pfam | 506 | 527 | 22 | 1.2 | ||
| ProSiteProfiles | 568 | 602 | 35 | 9.723 | ||
| Pfam | 571 | 600 | 30 | 0.0044 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0180400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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