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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0181700 |
| Transcript ID | LotjaGi3g1v0181700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G05750.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750, chloroplastic; TrEMBL-Plants: tr|K7M2Y7|K7M2Y7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0181700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25343779..25347215) extracted from Lotus japonicus Gifu genome v1.2.
CCCAAAACATTATTAAATGAAAAAAAGTGTAATCCTCAAGAGAGGAATTTGAATTTTGCAAGAATGATTCTTCCTGCATG CACAGCAACACCAATACAGCATTCTCAGCCTCCAAAACCAGCTTCACCTATTCCACTTCCAAAACAAGCAAACCCCACTT TTTCTCCCTATAATCCCAACACAAACCAAAGCTTCTCCCTGAGACACAACACCAAACACACCGACCCCACCGTGGCATGG ACCTCCTCCATAGCTCACCACTGCCGAAGTGGCCAACTGGTTGAAGCTGCTTCCACATTCGTGCGCATGAGGGAAGCTGA GGTTGAACCCAATAACATCACTCTCATCACGCTACTCTCTGGTTGCGCTCACTATCCTTCTCCCAGCAGCGTCTCCTTTG GAGCCACGGTGCACGCTTACGCTCGCAAACTGGGCTTGGACATGAACGATGTCAAGGTGGGTACGGCATTGATTGACATG TACGCCAAATCCGGTAATGTGGATTCAGCTAGATTGGTTTTCGATCAAATGGGTCTCAGAAATTTGGTGTCTTGGAACAC GATGCTTGATGGGTACATGAGGAGTGGGGAAATTGAAGATGCACTCCAACTGTTTGATGAATTTCCTGTGAGGAATGCCA TTTCTTGGACCGCACTCATTGGCGGGTTTGTGAAGAAAGATTATCACGAGCAAGCGCTGGAGTGCTTTCGAGAAATGCAG CTCTCTGGGGTGGCTCCTGATTATGTGACTGTTATTGCTATCATTGCGGCGTGCGCCAACTTGGGTGCGCTCGGTCTTGG GTTGTGGGTGCATCGACTTGTGATGACACAAGACTCTTTAAAGGACAATGTTAGAGTTTCCAACTCTTTGATAGACATGT ATGCTCGATGTGGGTGTATAGAGATTGCTCGTCAGGTGTTCGACGGAATGCGTCACCGAACCATGGTATCATGGAACTCT ATCATTGTGGGTTTTGCTGCTAATGGGCTTGCAGATGAGGCTCTGAGTTTCTTCAATTCAATGCAGAAGGAAGGGTTTGA GCCAGATGGAGTCAGCTACACAGGTGCTCTGACCGCGTGCAGTCATGCTGGACTAATTGATGAGGGGCTCAGAATCTTCA ATAAGATGAAGAGAGTTCGTAGAATTGCACCTAGAATAGAGCATTATGGTTGCCTGGTTGATCTCTATAGTAGAGCTGGG AGGTTGGAGGAGGCTTTGGATGTAATTAAGAATATGCCAATGAAGCCAAACGAAGTGGTGTTGGGGTCATTGCTTGCTGC TTGTAGGACCAAAGGGGAGATTGGGTTGGCTGAAAAGGTGATGAAGTATCTTGTTGAATTGGACCCCGGAGGGGATTCCA ATTATGTGCTTCTTTCTAACATATATGCAGCGGTTGGAAAGTGGGATGGTGCAAACAAGGTTAGGAGGGCAATGAAAGAC CGCGGTATACGAAAGAAACCAGGCTTTAGTTCCATTGAGATTGACTCCAGCATTTACAAATTTGTGGCGGGTGACAAGTC TCACGAGGAGAATGGGTCTATTTACGCATCGTTGGAACTTCTTTCCTTTGAACTACAACTATGTGGCTATGTTCCTGATT TCTCTGATAAAGAAACTTATGAGGATGATTGAATTTTGTAATCAAGTTACTCAATTTGTTAACAGATCTACTAATTAAGT TATAGAAGGTGATTGATATACATTGTGGACGTGTAAAAGATTAAATCACTTTTTGAAATGGAGAGAGTGTAATCTTTTGT GCCTTTTGTTGCTGATGGTTTCATGCCATCAAGCAATTTCCATTCCTCAACATCTGAATTACTCTTTGAACTATTCAGCA TTTTTTTAACAACAATACTTCATCTATACTCCAATCTCATTCACACCTAGAAAGAGATAAAAGGAGTGGGAGGAGAGCGA AAAATAAGAGATAATTAACGATAAGATTTGGTGCTCACTCCTTCCTACTTTCAACATCACCAAATTTACCAAGTCTGCAA TGACCATAAGAATGATTGACTACAATCAATTCAAACGAATAAATAAAATGTACATTTAAATTAAAAAAAATTATCCTTTC ACAACCACTTTCTCTTCAATTCTAATTTCACCCCTTTCTTTTTCTTCACTATCTTCTTTTTTTCATCATATCACCTTTTT TTTCACCGGGTGTAATGGGGTCATCCTAACATCAGTAAAATTCAAACTGATGAGGTAACACACGGTTCCGCTTCCCGCTG ATAACGAGTAGTGATTTATAAACATTCTTCTATTTTTTTCACCTCATTTCCGCTCTTTTTTTTCTATCTCTCTTTGCATT TTCTATCGCATCACTGATCATATCACTCATATCTCTCTCTTCTCTTCTTACATGACTCTCGGTGTGAGTGAAAGAGAAGG GTGTACAAGACATTATTCTGCTCCCATAAACCCTGTCCGCAACTCTCTCAGCCAACTCAACATTCCCATGAGTTCTACAT GCCCCCAACAAGGCACCCCACAAAGCTTCATCAGGCTCAACATCCATTCCCCAAACTAACTTCTCAGCTTCCTCCAACAG CCCAACCCTCCCCAACATGTCCACCATGCACGTATAATGCCGCAGCCCAGGCTTCACCCCAAACCTCGCCTCCATCATCT CAAAATACTCCCTCCCCTTCTCTACAAACCCCCCATGACTACAAGCAGTCAAAACAGCAGTAAAAGTCACACCATCAGGC CTCACCCCTCCCTCCACCATTCCATCAAACAACTCAAACACCTCTCCAAACTCCCCATGCGTTCCGTAACCCTTCATCAT AGTCGACCACGTGATCTCATTCCTCTGCGGCATTCCATCAAACACCCTGCGCGCACAATACAAAACACCACACTTCCCAT ACATATCAATCAAAGCATTCGAATTTGCCAAATCTAAGCCATACCCATTAACCAAAACAGCTCCATGTACCTGCTGACCA AGCCGCAACGCCGTTAACCCAGCGCAGGATTTAAGCACCACAGGTAGCGTTTGCCGATCAAAGGGCTTCCAGGAACGGAG CATATGGCGGAAGAGCGAGAGGGAATGGGAGAAGAGATTGAGTGAGGCATTGGCTCTGATGAGGGAGTTGAAGAGGAAAG TGGGTTGGCGATTGGTGAAGGAGAAGAGAATGTTGGCTTGGTGCAATTGGGCACAGGAAGCGTAGCATGATACGAGCTTG GTTTTGATGAAGTCATTGCGTGAAATTCCTAGTCTGATGGTGTGGGCGTGGATTTGCTTCAGATTCTTCAAGTTCTTCGA GTAAGAACAAGCTTCGAGTAGAGTGGCGTAGAATGGCACGAGTTCCTGATGCTTGGCCATTCCAGAAGGAAACGTTGGAG AAGCATTGAACTTTTCAAATATCTGTTCAAGAATGATGGAAGATATAGGCATACAAGTGGGACTAGGGTGTGGCTTG
CDS sequence (LotjaGi3g1v0181700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCTTCCTGCATGCACAGCAACACCAATACAGCATTCTCAGCCTCCAAAACCAGCTTCACCTATTCCACTTCCAAA ACAAGCAAACCCCACTTTTTCTCCCTATAATCCCAACACAAACCAAAGCTTCTCCCTGAGACACAACACCAAACACACCG ACCCCACCGTGGCATGGACCTCCTCCATAGCTCACCACTGCCGAAGTGGCCAACTGGTTGAAGCTGCTTCCACATTCGTG CGCATGAGGGAAGCTGAGGTTGAACCCAATAACATCACTCTCATCACGCTACTCTCTGGTTGCGCTCACTATCCTTCTCC CAGCAGCGTCTCCTTTGGAGCCACGGTGCACGCTTACGCTCGCAAACTGGGCTTGGACATGAACGATGTCAAGGTGGGTA CGGCATTGATTGACATGTACGCCAAATCCGGTAATGTGGATTCAGCTAGATTGGTTTTCGATCAAATGGGTCTCAGAAAT TTGGTGTCTTGGAACACGATGCTTGATGGGTACATGAGGAGTGGGGAAATTGAAGATGCACTCCAACTGTTTGATGAATT TCCTGTGAGGAATGCCATTTCTTGGACCGCACTCATTGGCGGGTTTGTGAAGAAAGATTATCACGAGCAAGCGCTGGAGT GCTTTCGAGAAATGCAGCTCTCTGGGGTGGCTCCTGATTATGTGACTGTTATTGCTATCATTGCGGCGTGCGCCAACTTG GGTGCGCTCGGTCTTGGGTTGTGGGTGCATCGACTTGTGATGACACAAGACTCTTTAAAGGACAATGTTAGAGTTTCCAA CTCTTTGATAGACATGTATGCTCGATGTGGGTGTATAGAGATTGCTCGTCAGGTGTTCGACGGAATGCGTCACCGAACCA TGGTATCATGGAACTCTATCATTGTGGGTTTTGCTGCTAATGGGCTTGCAGATGAGGCTCTGAGTTTCTTCAATTCAATG CAGAAGGAAGGGTTTGAGCCAGATGGAGTCAGCTACACAGGTGCTCTGACCGCGTGCAGTCATGCTGGACTAATTGATGA GGGGCTCAGAATCTTCAATAAGATGAAGAGAGTTCGTAGAATTGCACCTAGAATAGAGCATTATGGTTGCCTGGTTGATC TCTATAGTAGAGCTGGGAGGTTGGAGGAGGCTTTGGATGTAATTAAGAATATGCCAATGAAGCCAAACGAAGTGGTGTTG GGGTCATTGCTTGCTGCTTGTAGGACCAAAGGGGAGATTGGGTTGGCTGAAAAGGTGATGAAGTATCTTGTTGAATTGGA CCCCGGAGGGGATTCCAATTATGTGCTTCTTTCTAACATATATGCAGCGGTTGGAAAGTGGGATGGTGCAAACAAGGTTA GGAGGGCAATGAAAGACCGCGGTATACGAAAGAAACCAGGCTTTAGTTCCATTGAGATTGACTCCAGCATTTACAAATTT GTGGCGGGTGACAAGTCTCACGAGGAGAATGGGTCTATTTACGCATCGTTGGAACTTCTTTCCTTTGAACTACAACTATG TGGCTATGTTCCTGATTTCTCTGATAAAGAAACTTATGAGGATGATTGA
Protein sequence (LotjaGi3g1v0181700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILPACTATPIQHSQPPKPASPIPLPKQANPTFSPYNPNTNQSFSLRHNTKHTDPTVAWTSSIAHHCRSGQLVEAASTFV RMREAEVEPNNITLITLLSGCAHYPSPSSVSFGATVHAYARKLGLDMNDVKVGTALIDMYAKSGNVDSARLVFDQMGLRN LVSWNTMLDGYMRSGEIEDALQLFDEFPVRNAISWTALIGGFVKKDYHEQALECFREMQLSGVAPDYVTVIAIIAACANL GALGLGLWVHRLVMTQDSLKDNVRVSNSLIDMYARCGCIEIARQVFDGMRHRTMVSWNSIIVGFAANGLADEALSFFNSM QKEGFEPDGVSYTGALTACSHAGLIDEGLRIFNKMKRVRRIAPRIEHYGCLVDLYSRAGRLEEALDVIKNMPMKPNEVVL GSLLAACRTKGEIGLAEKVMKYLVELDPGGDSNYVLLSNIYAAVGKWDGANKVRRAMKDRGIRKKPGFSSIEIDSSIYKF VAGDKSHEENGSIYASLELLSFELQLCGYVPDFSDKETYEDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 41 | 41 | - | – | |
| Phobius | 1 | 226 | 226 | - | – | |
| MobiDBLite | 15 | 31 | 17 | - | – | |
| PANTHER | 44 | 103 | 60 | 9.3E-100 | – | |
| ProSiteProfiles | 55 | 89 | 35 | 9.273 | ||
| Gene3D | 55 | 205 | 151 | 6.2E-29 | ||
| Pfam | 56 | 102 | 47 | 8.2E-8 | ||
| TIGRFAM | 58 | 90 | 33 | 0.0018 | ||
| PANTHER | 112 | 187 | 76 | 9.3E-100 | – | |
| SUPERFAMILY | 116 | 468 | 353 | 1.61E-7 | ||
| ProSiteProfiles | 129 | 159 | 31 | 7.925 | ||
| Pfam | 134 | 158 | 25 | 0.0013 | ||
| TIGRFAM | 134 | 156 | 23 | 7.2E-4 | ||
| ProSiteProfiles | 160 | 190 | 31 | 10.457 | ||
| TIGRFAM | 162 | 187 | 26 | 5.7E-7 | ||
| Pfam | 162 | 187 | 26 | 4.1E-7 | ||
| ProSiteProfiles | 191 | 225 | 35 | 11.213 | ||
| Pfam | 191 | 238 | 48 | 4.1E-9 | ||
| PANTHER | 192 | 248 | 57 | 9.3E-100 | – | |
| TIGRFAM | 193 | 226 | 34 | 1.1E-6 | ||
| Gene3D | 206 | 357 | 152 | 1.1E-38 | ||
| TMHMM | 227 | 249 | 23 | - | – | |
| Phobius | 227 | 249 | 23 | - | – | |
| PANTHER | 246 | 466 | 221 | 9.3E-100 | – | |
| Phobius | 250 | 522 | 273 | - | – | |
| ProSiteProfiles | 262 | 292 | 31 | 8.627 | ||
| TIGRFAM | 267 | 291 | 25 | 0.0027 | ||
| Pfam | 267 | 291 | 25 | 0.0015 | ||
| ProSiteProfiles | 293 | 327 | 35 | 12.145 | ||
| Pfam | 294 | 340 | 47 | 3.1E-11 | ||
| TIGRFAM | 295 | 328 | 34 | 2.1E-8 | ||
| ProSiteProfiles | 328 | 362 | 35 | 8.67 | ||
| TIGRFAM | 330 | 357 | 28 | 0.001 | ||
| Gene3D | 358 | 427 | 70 | 6.8E-7 | ||
| ProSiteProfiles | 364 | 398 | 35 | 8.309 | ||
| Pfam | 367 | 392 | 26 | 5.5E-4 | ||
| TIGRFAM | 368 | 391 | 24 | 6.3E-4 | ||
| ProSiteProfiles | 430 | 464 | 35 | 7.64 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0181700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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