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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0184400 |
| Transcript ID | LotjaGi3g1v0184400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatidylglycerol/phosphatidylinositol transfer protein; TAIR: AT3G11780.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; Swiss-Prot: sp|Q54SW1|Y2179_DICDI Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179; TrEMBL-Plants: tr|C6TFA8|C6TFA8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0184400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25811045..25814213) extracted from Lotus japonicus Gifu genome v1.2.
AAAACACAATGAGGATAAACCCACACCGCTAGAAAAATAAAGCACAACCAAATGCAGCATAAAGCCATATATGAAACCCG CATTATTTTTCAAATGCAGCTTTGAAGAACCTTTCTAATTCTAATGGAGTTTCAGTTTCATCCAAAATTCTACCATCTTT TATGCTTATTCATCCTCTTCCATCAATCCTTTCGTGCTCAAGCTGCTAACTTCAGATATTGCGGTAACATCTCTTCTCTC CCTGAAATCGCACAGCCCTTTATTTAATTCTCATACAATTTTGCCCATAAGAAATTTGTACTTTTTAACATTTACTTGGA GTATGATAAATTATGTACTTTTACATCACTTTAGTTTTTGGTGTAATTAATGTATGCAGCTGATGTAAACTATGCTGTGA AGGTGTCTGAAGTTGAAATTACACCAAACCCTGTTGTGCGTGCAAGACCAACTACCTTTAAGATTTCAGCTGTTACTGGT ATTTCCCAATTCTCATCTTGCTTTCATTTAGTAGGGACCTGGTTAGTAGTAATAACATATGCTAATTGTTTACTTTGAAG CATTATTATGTGTATCGGTGCTGCTTTAGCCGTTTTAATTTTGAAGGGAATTTTACTTTTTACTGTCTATGTTTGGTGTA GGTGAAGCTATTTTTGGTGGGAAGTGGGTGATTAAAGTTTCATACATTGGAATACTTGTCCATCAAGAAGTTCATAATCT TTGTGAGGAAGTATCCTGTCCTGTTACTGCTGGCGATTTCGTGGTTGCTCACACCCAGAAGTTGCCTGTATTTGCCCCGC CGGTTAGTTTCTCCAATTGATGAAATATAAGCTCTTGGCAATGATGAAATCAATCATAAATATCACCCTGTCATGATTGA AAATTTCCTTTCAAATCTATAAGGATCCCCTTGACACACAAATGCATGTTCGAAATTTTGAGTTTATTTAATATGGCATG GATTCAGTTACTAGATTTCTCATCAGGCATTTGAAATTTGCGTTTGGTGTGTGCTGTACAATCTTTCTAGCTAGGCTAAT AACTGCAAAACTATCAGTCAGTGGCCGAGGCTTGAGACTAGGGAGGCCAAGACCAAAGAGGGTGGGGGGTGGGGCAAGAT CAAAGAATATGGCATGCATTATGCATACAATGATTTCTGTAGCTCACATACATATGTATCACATGTAAAAAATAAAATTG AAAAGCTTGGGGGGCCATGGTAGTAGCATGTCCTCCCTCCCTCCTCCACTGATCACTATGTACTTATTACTTTACTCAAT AATAGCTGTTTGGTCTCTTGAGAATGGCAGAAATCACTATGGTGTGTTATGTGTATCTTTGAGGAGTTTGACTCCTGCAT TATTTTCACCCACATAATTGTTGCATTTTATCAAGCAGTGTTGTTAAATAGCGGTTATAGCGTCGCTATGCCCCTATAGC GTAGCGGAAATTTGCCGTGCCACAACAGAAAATCCGCAGTTCCACCTAAAGAGTTAACTAGATGTTTTGTTCTGACTGAC TGCTAAATGCTAATATGCTACCTTAATCACTCTTGTCATCATGTAAGTTTTTCTATTTTGGTTAAACAATATATGACTCA GATGATTTCCTTGTCATCATTTTAATGATTACAGGGATCCTACACTGTGGAGATGAAACTAAAGAATGAGGAGAATGAGC CATTAACTTGCATCACCTTTAAATTGAAAATTGGTTTTGGATCTTCTGTGTCTGAAATCTGAAGTAGTATCATTGCATTA CCTAAAGCGCCGGTGTAAACTATCTCATATTAAATATAAACAGGCAATTCAGGAGGTATGATTGATATAGTCTAATTTTC CTTTGAAGTATGAATGATCAGATCGACTATGTGTCAATGACAAAAAAACATATGATACTGTCCATAACTGGTCTATAATT CTTCTTCTTCTTCTTCTTCTTCTTCTTATATTAAAAGATGATGCATGGAATGTTCAACCCATTTTTATTCCAGTGCTGTA AAGTATTCAGACATGTAGTGTGAAATAGTTAAGTAAAAACTTAGTAGGGTTTTATCATTTAGGTGGTTGTATGTATATTT CAGTTTGAAAACGTTTCACGAGAATTGGTGAACTACTCGAGACCATTTCATTTAAATCTTAGTTCATCTGTGCATTGAAT ATGTTTACTATATAGCTTTTAGATCATATGCAAATATAAGATTTTTTTCCAAAGTCCAAACCTTGCAACGAAAAATGAGT TTGACAAAGTAAAATATTCAGGCAATGTATGTCCAGTGTCAAAATTTACAGTGGTGAATAAGGTAACAATAGTAAAGAAG GAAAAAAAAAAAATGAAGTCAAATTAGCATTGAACTGAATAATGCTGAAGATTCAGAGAATGGCAGGCACAGAGAGGTCA GTTTAGATTTTCAGGTCCTTTCTTCTTTGGTTTGTTATTAACTCTTAGATGTTGACAACTTGACAGTATTAATTTTTTAC TGTGTTCTTGAAATGCACAAAGTCTTCTAGACATCTGCAACCTTTATGTCTTTTTTCTTTATTTTTCTCAATAGATGAAT CCTTAATCCTCCAACATCTGTGATGGACAATCCAGACCTCTGCTGCAAAGGGGTTTATCATTGTAGAAATTTATTTGTAG TCTTTTTTTAAAATGGAGTGCATTTTGGTATGCAGAAGGCAAATAAGCTGATAACTGTCGGATTAAACTGACTACTGTGG CTTTAGTACAGTTAAAGGGGGACAAACTGTCCCATTCTTAGAATAGTTTTTGTGAAATAAATCGGTAGAAAGGGGAATGA TGGGCTGAATGATAATGGGTGAATTAGGAAAAAGTTGCATGTTTACTACAGGAGAAATGAGGGTAGAGGTGAGGCAAGTA ATCTGAATAGGGATAGATTGACAAAATTTTGTTATTGAGTGGGACCACTGACATAAAGCCCATGAAGAAGGTTCTGGTAT CAGAATGTGAGGGACGTGATAGGAAAATGGGAAAGAGGAGGGAGAAGGAAGGATGATGAATATATGCTTTTGGGGTCTGG AATAGAATAATGATGAATTTCTGGTTTTCAGGTCTGGGATAGGGAGAGGAAACTGAAGCATTTCTTCTCAGGACTAATTC TATTTTTTCTTTGTATGTTAAATTTCTATCTCATTTGTATGAGTGATAC
CDS sequence (LotjaGi3g1v0184400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTTCAGTTTCATCCAAAATTCTACCATCTTTTATGCTTATTCATCCTCTTCCATCAATCCTTTCGTGCTCAAGC TGCTAACTTCAGATATTGCGCTGATGTAAACTATGCTGTGAAGGTGTCTGAAGTTGAAATTACACCAAACCCTGTTGTGC GTGCAAGACCAACTACCTTTAAGATTTCAGCTGTTACTGGTGAAGCTATTTTTGGTGGGAAGTGGGTGATTAAAGTTTCA TACATTGGAATACTTGTCCATCAAGAAGTTCATAATCTTTGTGAGGAAGTATCCTGTCCTGTTACTGCTGGCGATTTCGT GGTTGCTCACACCCAGAAGTTGCCTGTATTTGCCCCGCCGGGATCCTACACTGTGGAGATGAAACTAAAGAATGAGGAGA ATGAGCCATTAACTTGCATCACCTTTAAATTGAAAATTGGTTTTGGATCTTCTGTGTCTGAAATCTGA
Protein sequence (LotjaGi3g1v0184400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFQFHPKFYHLLCLFILFHQSFRAQAANFRYCADVNYAVKVSEVEITPNPVVRARPTTFKISAVTGEAIFGGKWVIKVS YIGILVHQEVHNLCEEVSCPVTAGDFVVAHTQKLPVFAPPGSYTVEMKLKNEENEPLTCITFKLKIGFGSSVSEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 154 | 154 | 5.1E-66 | – | |
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 154 | 154 | 5.1E-66 | ||
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 12 | 19 | 8 | - | – | |
| Phobius | 20 | 27 | 8 | - | – | |
| Gene3D | 26 | 147 | 122 | 2.6E-9 | – | |
| SUPERFAMILY | 27 | 146 | 120 | 6.06E-23 | ||
| Phobius | 28 | 155 | 128 | - | – | |
| Pfam | 29 | 146 | 118 | 1.6E-21 | ||
| SMART | 30 | 144 | 115 | 6.0E-28 | ||
| CDD | 30 | 143 | 114 | 1.81627E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular sterol transport | The directed movement of sterols within cells. |
Expression pattern of LotjaGi3g1v0184400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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