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LotjaGi3g1v0195000.1

Overview

Field Value
Gene ID LotjaGi3g1v0195000
Transcript ID LotjaGi3g1v0195000.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Pyruvate decarboxylase; TAIR: AT5G54960.1 pyruvate decarboxylase-2; Swiss-Prot: sp|Q9FFT4|PDC2_ARATH Pyruvate decarboxylase 2; TrEMBL-Plants: tr|A0A061EQM3|A0A061EQM3_THECC Thiamine pyrophosphate dependent pyruvate decarboxylase family protein; Found in the gene: LotjaGi3g1v0195000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:28333445..28337804) extracted from Lotus japonicus Gifu genome v1.2.

CTTGTGCCACACACACACAGTCTCGTCTCATTCATCTCATGTTCTTGTCTTCCAAGAAACACATTGATTACACCACACAC TATAAATACTCCTCTTCTCTCATTCATCTCTTCACAACAACAACAACAACAACACACTAAAATCTTCTACAACTTAACAC ACACAATCACTCACTTTTTCTCCTAATTAATCATTCATCAATCATCATGGACACAAGGATCGGATCTCTTGACACATGCA ACCCCACAAGCAACGACGTGGGGTCTCTACCCAACGGCACCGCCGTCTCCGCCATCCAAAACACTGCCCCCTTGCCGCTG GTGACCCCCTCCGAGGCCACACTAGGCCGCCATCTAGCACGGCGGCTAGTGCAAGTTGGAGTCACCGACGTGTTCTCTGT CCCCGGTGACTTCAACCTGACGCTGCTGGACCACCTCATCGCGGAGCCGGAGCTGAAGGTGGTCGGGTGCTGCAATGAGT TGAACGCCGGGTACGCCGCCGATGGGTATGCAAGGTCTCGTGGTGTTGGGGCGTGCGTGGTGACGTTCACTGTTGGGGGG CTGAGTGTGATTAATGCAATTGCAGGGGCTTATAGTGAGAACTTGCCTTTGATTTGCATTGTTGGTGGTCCCAACTCGAA TGACTTTGGTACTAACAGGATTCTTCATCATACTATTGGGTTGCCTGATTTCAGCCAGGAACTTAGGTGCTTCCAAACAG TTACTTGCTACCAGGTCTATTTCTTTATTCCCACTCTCTCTTGTTATCTATTTATTTATTTTTATGGCTGTGCTAGTGGC TTAGTGGCCAGTGCTCATTTCCCAACATGAAATTAAAAAAAAGATTATTTATGAAGTTTGCATACGTTAATAGGAAGAAG ATGAGAGTCTGATAGGATTAAAATTCCTGATTAAATAATATTTAAGGTTAAAGGTTAGGGTTAGAGAATTGTTTGAGGAA ACAAATTAACTTTATTTTGGTTACAAGGAAACAAATAAACTGAGAGTAATACACATTTTCAAGTTCAAAAAAAAAAAACT CATTTTCTGATTAATTAAAAAAAAAATACTAATTTTCTGATTTTTCATTAATGAAGAGGTAATATAATTTATAGAAGGAA ATAACAACTAAGCTAAATTGGAAAGGAAGGAAATAACTAATTAGAAATAACGGAATATCTGAAATACAAATCTAATTTTT TTTTGAAGGTAAATACAAATCTAAATTGACTAGAAATAAAATAACTGAATAAAAGTCCAAATTAACTAGATTTAATAATA TCTAAGTTAATTAGAAATATTTGGTCATCTACTTAAATTTATTGATGGTCCATTTTGGCCTTGTAGGAATCACCATAAAA GGCATGTTTGGACTATCAGAGACACTCTTTGGGTGTATACCGGAGAGAAAGGAAAAAATAAAAGAGGAGTTAAATAGAAA GATAGAAAATGAAAAAAATAAATGAGAAATGAGTTTTTTGAAATTCAGAACTCATGTAAATATATGATCAATATAATAAC TTTATAGGTAGGGGCTGACCAAAAAGAGTATGAAATTAATATAGAAATATGAATTTCAAATTAAAATAAATGATAGATAT TTAAAGTTGATTTAGAAGTATAAAATATCTAATTTTATATTTATTAGGTGTTTTTTAGAATACATGTTTGAAACAGAGAC AATTGCTATTTTTGAAGCATTTATATTTTTATTGTATATACTTTTTGGTGTCTATCTTTTGTTAGCTTTTTGAAGTGAAA TAAAATAAATGATTTTCTTAAAAACAAATTCTTGATGAAGTGAAACTTCATTTGGTTGTGTATTAAGTGACTTATGTGCA TGGTTTGATTTTGATAGGCTGTGGTCAATAACCTGGAAGATGCTCATGAAATGATTGATAGTGCAATCTCAACTGCACTG AAAGAAAGCAAGCCTGTCTATATAAGCATAAGTTGCAACTTGCCTGGCATTCCTCACCCCACTTTCAGTCGTGATCCTGT CCCATTTTCTATATCTCCAAGGTAAGTTTTCTAGTTTTTGTACTTTTTAATGTTGCTTCTGGTTTTGTCAAGAATCCAAT CATGGAAAATGCTGATAATTCTTTTAGAGCCAGTTTGAGTACAGACTTATTGGAACTTACTAGAAAATACACTAAATAAG TTTTCATAAGTGTTCTTTGATTTGCACCTAAACGGGTAGTTAGTCTTATTGGTTTTATTGACTTATGATTTGGTGTTTTG CAGATTGAGTAATCAGATGGGGTTAGAGGCAGCAGTGGAGGCAGCAGCTGAGTTTCTGAACAAGGCAGTGAAACCAGTGC TAGTTGGTGGTCCTAAACTGAGAGTGGCTAAGGCCAGTGATGCTTTTGTTGAGCTTGCTGATGCATGTGGCTATGCGTTT GCAGTAATGCCATCAGCTAAAGGACTAGTCCCTGAGCACCACCCTCACTTCATTGGAACATATTGGGGAGCTGTGAGCAC TGCTTTCTGTGCTGAGATTGTGGAGTCTGCTGATGCATACCTCTTTGCTGGACCCATTTTCAATGACTACAGCTCTGTTG GGTACTCACTTCTCCTCAAGAAGGAGAAGGCTATCATTGTGCAGCCTGACCGCGTTGTGATCGGAAATGGACCTGCATTC GGGTGTGTTCTGATGAAGGATTTCCTCAAGGCGCTTGCGAAGCGCCTCAAGAAGAACAACACTTCTTATGAGAACTACTT TAGGATATTTGTTCCTGATGGCCTGCCTGTGAAGTCTGAACCCAGAGAGCCTTTAAGGGTTAATATTCTGTTTCAACATA TACAGAACATGATGTCTGGTGAAACTGCTGTGATTGCTGAGACAGGGGACTCATGGTTTAACTGCCAGAAGCTGAAGCTG CCAAAAGGGTGTGGGTAAGTAGCTGACTGAATGTGGTTTCTTGGTACTTGTCATCCTAATTTTTTTGCTAGTTTTGATGA AAATTTTGTTTACAGTTATGAGTTCCAAATGCAATATGGGTCAATTGGATGGTCTGTTGGAGCAACTCTTGGATATGCTC AGGCTGTCCCAGAGAAGCGAGTAATTGCTTGCATTGGTGATGGCAGCTTTCAGGTTAGTCTACTCTTGCATAACTACTTA AAGTATGATTGTAGCATTTAGCGTTCGAAGTCTTATCCCACAATGTGAAATCGACTATACGGATCACTAATCTATATTAA AGATTAGTCGGTTTTATATTGGCTGCCGAAGAGCTAGAGGCGAAGTTTACTTAAGCATGATTACAATAAAAGAAAATTGT TTTGACTTGGTCATAATCAAATTTCCAAATTTCAACTTATAGAATTATTTTCTCCAAGTTTTAACTCAACAATTCTTGAA TAATTGATTATAATGTATTTATCATTCCTTTGTAGGTGACAGCACAGGATGTGTCCACAATGCTGAGATGTGGGCAGAAG AACATCATCTTCCTGATAAACAATGGTGGATACACCATTGAAGTTGAAATCCATGATGGGCCATACAATGTGATCAAGAA CTGGAATTACACTGGCTTAGTTGATGCAATCCACAATGGTGAAGGAAAATGCTGGACCACTAAGGTGAGTTGCAGCTAGC ATAACATGAAACATTCTTCTCAAAACTTCATTCATTGCTGTTAAAATATTAATCTGTGTATGTTTTGTTGCAGGTTACTT GTGAAGAGGAGCTTGTTGAAGCAATTGAGACAGCAACAGGAGCTAAGAAGGATAGCTTGTGCTTCATTGAGGTGATTGTT CACAAGGATGATACCAGCAAAGAGTTGCTTGAATGGGGTTCCAGGGTCTGTTCAGCTAATGGCCGTTCTCCCAATCCTCA GTGAACTAAAGCCATTACAACAACGTAGGGAATGGAGTTTTGCACAATTGGCACGAGTTTTTCCAAAAAAGAAGTTTCTA GTGAAACTCATTCATTTAAGATTCTTATGTAATGAGGAGAATTTTCTATGATTAATTTTTTCTTTTTGACAGAAGAATTT TCTTTGGTTAATTCTTGGGCATTTATTAAAATGTTTGAATGAGTGCTTCCAATTATCTTCCACTTTTTAATGCATCAATG CTTCCAATGCAAATCTTGAAATCCCCTTTTTTGCCCCCTATTCAGTTTAAGTGTCTCGTAAAAGGGAAAGATCACCTAGT CCTATTTCTGATATGATTCCTAAGATGGTGTTGGGTTACACTGGGCAGGAAGTTATTTCAATTAGCTTGGACTTGAGACA AAAATCAATAGTCTGTGCATGTAGCAATGAAACCTTTGATTCATACTGGAGCAGGATAGATGTTAGATGAAAAGGGTGAG GGTGATTTGAGATTGTACTGATGGAGAAAATGGGACTTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0195000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACACAAGGATCGGATCTCTTGACACATGCAACCCCACAAGCAACGACGTGGGGTCTCTACCCAACGGCACCGCCGT CTCCGCCATCCAAAACACTGCCCCCTTGCCGCTGGTGACCCCCTCCGAGGCCACACTAGGCCGCCATCTAGCACGGCGGC TAGTGCAAGTTGGAGTCACCGACGTGTTCTCTGTCCCCGGTGACTTCAACCTGACGCTGCTGGACCACCTCATCGCGGAG CCGGAGCTGAAGGTGGTCGGGTGCTGCAATGAGTTGAACGCCGGGTACGCCGCCGATGGGTATGCAAGGTCTCGTGGTGT TGGGGCGTGCGTGGTGACGTTCACTGTTGGGGGGCTGAGTGTGATTAATGCAATTGCAGGGGCTTATAGTGAGAACTTGC CTTTGATTTGCATTGTTGGTGGTCCCAACTCGAATGACTTTGGTACTAACAGGATTCTTCATCATACTATTGGGTTGCCT GATTTCAGCCAGGAACTTAGGTGCTTCCAAACAGTTACTTGCTACCAGGCTGTGGTCAATAACCTGGAAGATGCTCATGA AATGATTGATAGTGCAATCTCAACTGCACTGAAAGAAAGCAAGCCTGTCTATATAAGCATAAGTTGCAACTTGCCTGGCA TTCCTCACCCCACTTTCAGTCGTGATCCTGTCCCATTTTCTATATCTCCAAGATTGAGTAATCAGATGGGGTTAGAGGCA GCAGTGGAGGCAGCAGCTGAGTTTCTGAACAAGGCAGTGAAACCAGTGCTAGTTGGTGGTCCTAAACTGAGAGTGGCTAA GGCCAGTGATGCTTTTGTTGAGCTTGCTGATGCATGTGGCTATGCGTTTGCAGTAATGCCATCAGCTAAAGGACTAGTCC CTGAGCACCACCCTCACTTCATTGGAACATATTGGGGAGCTGTGAGCACTGCTTTCTGTGCTGAGATTGTGGAGTCTGCT GATGCATACCTCTTTGCTGGACCCATTTTCAATGACTACAGCTCTGTTGGGTACTCACTTCTCCTCAAGAAGGAGAAGGC TATCATTGTGCAGCCTGACCGCGTTGTGATCGGAAATGGACCTGCATTCGGGTGTGTTCTGATGAAGGATTTCCTCAAGG CGCTTGCGAAGCGCCTCAAGAAGAACAACACTTCTTATGAGAACTACTTTAGGATATTTGTTCCTGATGGCCTGCCTGTG AAGTCTGAACCCAGAGAGCCTTTAAGGGTTAATATTCTGTTTCAACATATACAGAACATGATGTCTGGTGAAACTGCTGT GATTGCTGAGACAGGGGACTCATGGTTTAACTGCCAGAAGCTGAAGCTGCCAAAAGGGTGTGGTTATGAGTTCCAAATGC AATATGGGTCAATTGGATGGTCTGTTGGAGCAACTCTTGGATATGCTCAGGCTGTCCCAGAGAAGCGAGTAATTGCTTGC ATTGGTGATGGCAGCTTTCAGGTGACAGCACAGGATGTGTCCACAATGCTGAGATGTGGGCAGAAGAACATCATCTTCCT GATAAACAATGGTGGATACACCATTGAAGTTGAAATCCATGATGGGCCATACAATGTGATCAAGAACTGGAATTACACTG GCTTAGTTGATGCAATCCACAATGGTGAAGGAAAATGCTGGACCACTAAGGTTACTTGTGAAGAGGAGCTTGTTGAAGCA ATTGAGACAGCAACAGGAGCTAAGAAGGATAGCTTGTGCTTCATTGAGGTGATTGTTCACAAGGATGATACCAGCAAAGA GTTGCTTGAATGGGGTTCCAGGGTCTGTTCAGCTAATGGCCGTTCTCCCAATCCTCAGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0195000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDTRIGSLDTCNPTSNDVGSLPNGTAVSAIQNTAPLPLVTPSEATLGRHLARRLVQVGVTDVFSVPGDFNLTLLDHLIAE PELKVVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVINAIAGAYSENLPLICIVGGPNSNDFGTNRILHHTIGLP DFSQELRCFQTVTCYQAVVNNLEDAHEMIDSAISTALKESKPVYISISCNLPGIPHPTFSRDPVPFSISPRLSNQMGLEA AVEAAAEFLNKAVKPVLVGGPKLRVAKASDAFVELADACGYAFAVMPSAKGLVPEHHPHFIGTYWGAVSTAFCAEIVESA DAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVVIGNGPAFGCVLMKDFLKALAKRLKKNNTSYENYFRIFVPDGLPV KSEPREPLRVNILFQHIQNMMSGETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQAVPEKRVIAC IGDGSFQVTAQDVSTMLRCGQKNIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVTCEEELVEA IETATGAKKDSLCFIEVIVHKDDTSKELLEWGSRVCSANGRSPNPQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 22 22 - –
PANTHER
PTHR43452:SF20
1 606 606 0.0 –
PANTHER
PTHR43452
1 606 606 0.0 –
Gene3D
G3DSA:3.40.50.970
28 218 191 6.7E-67 –
PIRSF
PIRSF036565
40 601 562 4.6E-212
IPR012110
Pfam
PF02776
45 212 168 2.2E-35
IPR012001
SUPERFAMILY
SSF52518
45 223 179 5.05E-44
IPR029061
CDD
cd07038
48 209 162 3.09638E-91 –
SUPERFAMILY
SSF52467
231 385 155 1.24E-34
IPR029035
Gene3D
G3DSA:3.40.50.1220
231 394 164 7.9E-66 –
Pfam
PF00205
242 359 118 2.4E-21
IPR012000
Gene3D
G3DSA:3.40.50.970
400 588 189 4.4E-54 –
CDD
cd02005
407 589 183 2.18939E-88 –
SUPERFAMILY
SSF52518
407 595 189 2.66E-41
IPR029061
Pfam
PF02775
452 577 126 1.8E-14
IPR011766

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0016831
Molecular function Carboxy-lyase activity Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
Subterm of
GO:0030976
Molecular function Thiamine pyrophosphate binding Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0195000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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