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LotjaGi3g1v0195000.2

Overview

Field Value
Gene ID LotjaGi3g1v0195000
Transcript ID LotjaGi3g1v0195000.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Pyruvate decarboxylase; TAIR: AT5G54960.1 pyruvate decarboxylase-2; Swiss-Prot: sp|Q9FFT4|PDC2_ARATH Pyruvate decarboxylase 2; TrEMBL-Plants: tr|A0A061EQM3|A0A061EQM3_THECC Thiamine pyrophosphate dependent pyruvate decarboxylase family protein; Found in the gene: LotjaGi3g1v0195000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:28333651..28337288) extracted from Lotus japonicus Gifu genome v1.2.

ATGGACACAAGGATCGGATCTCTTGACACATGCAACCCCACAAGCAACGACGTGGGGTCTCTACCCAACGGCACCGCCGT CTCCGCCATCCAAAACACTGCCCCCTTGCCGCTGGTGACCCCCTCCGAGGCCACACTAGGCCGCCATCTAGCACGGCGGC TAGTGCAAGTTGGAGTCACCGACGTGTTCTCTGTCCCCGGTGACTTCAACCTGACGCTGCTGGACCACCTCATCGCGGAG CCGGAGCTGAAGGTGGTCGGGTGCTGCAATGAGTTGAACGCCGGGTACGCCGCCGATGGGTATGCAAGGTCTCGTGGTGT TGGGGCGTGCGTGGTGACGTTCACTGTTGGGGGGCTGAGTGTGATTAATGCAATTGCAGGGGCTTATAGTGAGAACTTGC CTTTGATTTGCATTGTTGGTGGTCCCAACTCGAATGACTTTGGTACTAACAGGATTCTTCATCATACTATTGGGTTGCCT GATTTCAGCCAGGAACTTAGGTGCTTCCAAACAGTTACTTGCTACCAGGTCTATTTCTTTATTCCCACTCTCTCTTGTTA TCTATTTATTTATTTTTATGGCTGTGCTAGTGGCTTAGTGGCCAGTGCTCATTTCCCAACATGAAATTAAAAAAAAGATT ATTTATGAAGTTTGCATACGTTAATAGGAAGAAGATGAGAGTCTGATAGGATTAAAATTCCTGATTAAATAATATTTAAG GTTAAAGGTTAGGGTTAGAGAATTGTTTGAGGAAACAAATTAACTTTATTTTGGTTACAAGGAAACAAATAAACTGAGAG TAATACACATTTTCAAGTTCAAAAAAAAAAAACTCATTTTCTGATTAATTAAAAAAAAAATACTAATTTTCTGATTTTTC ATTAATGAAGAGGTAATATAATTTATAGAAGGAAATAACAACTAAGCTAAATTGGAAAGGAAGGAAATAACTAATTAGAA ATAACGGAATATCTGAAATACAAATCTAATTTTTTTTTGAAGGTAAATACAAATCTAAATTGACTAGAAATAAAATAACT GAATAAAAGTCCAAATTAACTAGATTTAATAATATCTAAGTTAATTAGAAATATTTGGTCATCTACTTAAATTTATTGAT GGTCCATTTTGGCCTTGTAGGAATCACCATAAAAGGCATGTTTGGACTATCAGAGACACTCTTTGGGTGTATACCGGAGA GAAAGGAAAAAATAAAAGAGGAGTTAAATAGAAAGATAGAAAATGAAAAAAATAAATGAGAAATGAGTTTTTTGAAATTC AGAACTCATGTAAATATATGATCAATATAATAACTTTATAGGTAGGGGCTGACCAAAAAGAGTATGAAATTAATATAGAA ATATGAATTTCAAATTAAAATAAATGATAGATATTTAAAGTTGATTTAGAAGTATAAAATATCTAATTTTATATTTATTA GGTGTTTTTTAGAATACATGTTTGAAACAGAGACAATTGCTATTTTTGAAGCATTTATATTTTTATTGTATATACTTTTT GGTGTCTATCTTTTGTTAGCTTTTTGAAGTGAAATAAAATAAATGATTTTCTTAAAAACAAATTCTTGATGAAGTGAAAC TTCATTTGGTTGTGTATTAAGTGACTTATGTGCATGGTTTGATTTTGATAGGCTGTGGTCAATAACCTGGAAGATGCTCA TGAAATGATTGATAGTGCAATCTCAACTGCACTGAAAGAAAGCAAGCCTGTCTATATAAGCATAAGTTGCAACTTGCCTG GCATTCCTCACCCCACTTTCAGTCGTGATCCTGTCCCATTTTCTATATCTCCAAGGTAAGTTTTCTAGTTTTTGTACTTT TTAATGTTGCTTCTGGTTTTGTCAAGAATCCAATCATGGAAAATGCTGATAATTCTTTTAGAGCCAGTTTGAGTACAGAC TTATTGGAACTTACTAGAAAATACACTAAATAAGTTTTCATAAGTGTTCTTTGATTTGCACCTAAACGGGTAGTTAGTCT TATTGGTTTTATTGACTTATGATTTGGTGTTTTGCAGATTGAGTAATCAGATGGGGTTAGAGGCAGCAGTGGAGGCAGCA GCTGAGTTTCTGAACAAGGCAGTGAAACCAGTGCTAGTTGGTGGTCCTAAACTGAGAGTGGCTAAGGCCAGTGATGCTTT TGTTGAGCTTGCTGATGCATGTGGCTATGCGTTTGCAGTAATGCCATCAGCTAAAGGACTAGTCCCTGAGCACCACCCTC ACTTCATTGGAACATATTGGGGAGCTGTGAGCACTGCTTTCTGTGCTGAGATTGTGGAGTCTGCTGATGCATACCTCTTT GCTGGACCCATTTTCAATGACTACAGCTCTGTTGGGTACTCACTTCTCCTCAAGAAGGAGAAGGCTATCATTGTGCAGCC TGACCGCGTTGTGATCGGAAATGGACCTGCATTCGGGTGTGTTCTGATGAAGGATTTCCTCAAGGCGCTTGCGAAGCGCC TCAAGAAGAACAACACTTCTTATGAGAACTACTTTAGGATATTTGTTCCTGATGGCCTGCCTGTGAAGTCTGAACCCAGA GAGCCTTTAAGGGTTAATATTCTGTTTCAACATATACAGAACATGATGTCTGGTGAAACTGCTGTGATTGCTGAGACAGG GGACTCATGGTTTAACTGCCAGAAGCTGAAGCTGCCAAAAGGGTGTGGGTAAGTAGCTGACTGAATGTGGTTTCTTGGTA CTTGTCATCCTAATTTTTTTGCTAGTTTTGATGAAAATTTTGTTTACAGTTATGAGTTCCAAATGCAATATGGGTCAATT GGATGGTCTGTTGGAGCAACTCTTGGATATGCTCAGGCTGTCCCAGAGAAGCGAGTAATTGCTTGCATTGGTGATGGCAG CTTTCAGGTTAGTCTACTCTTGCATAACTACTTAAAGTATGATTGTAGCATTTAGCGTTCGAAGTCTTATCCCACAATGT GAAATCGACTATACGGATCACTAATCTATATTAAAGATTAGTCGGTTTTATATTGGCTGCCGAAGAGCTAGAGGCGAAGT TTACTTAAGCATGATTACAATAAAAGAAAATTGTTTTGACTTGGTCATAATCAAATTTCCAAATTTCAACTTATAGAATT ATTTTCTCCAAGTTTTAACTCAACAATTCTTGAATAATTGATTATAATGTATTTATCATTCCTTTGTAGGTGACAGCACA GGATGTGTCCACAATGCTGAGATGTGGGCAGAAGAACATCATCTTCCTGATAAACAATGGTGGATACACCATTGAAGTTG AAATCCATGATGGGCCATACAATGTGATCAAGAACTGGAATTACACTGGCTTAGTTGATGCAATCCACAATGGTGAAGGA AAATGCTGGACCACTAAGGTGAGTTGCAGCTAGCATAACATGAAACATTCTTCTCAAAACTTCATTCATTGCTGTTAAAA TATTAATCTGTGTATGTTTTGTTGCAGGTTACTTGTGAAGAGGAGCTTGTTGAAGCAATTGAGACAGCAACAGGAGCTAA GAAGGATAGCTTGTGCTTCATTGAGGTGATTGTTCACAAGGATGATACCAGCAAAGAGTTGCTTGAATGGGGTTCCAGGG TCTGTTCAGCTAATGGCCGTTCTCCCAATCCTCAGTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0195000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACACAAGGATCGGATCTCTTGACACATGCAACCCCACAAGCAACGACGTGGGGTCTCTACCCAACGGCACCGCCGT CTCCGCCATCCAAAACACTGCCCCCTTGCCGCTGGTGACCCCCTCCGAGGCCACACTAGGCCGCCATCTAGCACGGCGGC TAGTGCAAGTTGGAGTCACCGACGTGTTCTCTGTCCCCGGTGACTTCAACCTGACGCTGCTGGACCACCTCATCGCGGAG CCGGAGCTGAAGGTGGTCGGGTGCTGCAATGAGTTGAACGCCGGGTACGCCGCCGATGGGTATGCAAGGTCTCGTGGTGT TGGGGCGTGCGTGGTGACGTTCACTTTGCCTTTGATTTGCATTGTTGGTGGTCCCAACTCGAATGACTTTGGTACTAACA GGATTCTTCATCATACTATTGGGTTGCCTGATTTCAGCCAGGAACTTAGGTGCTTCCAAACAGTTACTTGCTACCAGGCT GTGGTCAATAACCTGGAAGATGCTCATGAAATGATTGATAGTGCAATCTCAACTGCACTGAAAGAAAGCAAGCCTGTCTA TATAAGCATAAGTTGCAACTTGCCTGGCATTCCTCACCCCACTTTCAGTCGTGATCCTGTCCCATTTTCTATATCTCCAA GATTGAGTAATCAGATGGGGTTAGAGGCAGCAGTGGAGGCAGCAGCTGAGTTTCTGAACAAGGCAGTGAAACCAGTGCTA GTTGGTGGTCCTAAACTGAGAGTGGCTAAGGCCAGTGATGCTTTTGTTGAGCTTGCTGATGCATGTGGCTATGCGTTTGC AGTAATGCCATCAGCTAAAGGACTAGTCCCTGAGCACCACCCTCACTTCATTGGAACATATTGGGGAGCTGTGAGCACTG CTTTCTGTGCTGAGATTGTGGAGTCTGCTGATGCATACCTCTTTGCTGGACCCATTTTCAATGACTACAGCTCTGTTGGG TACTCACTTCTCCTCAAGAAGGAGAAGGCTATCATTGTGCAGCCTGACCGCGTTGTGATCGGAAATGGACCTGCATTCGG GTGTGTTCTGATGAAGGATTTCCTCAAGGCGCTTGCGAAGCGCCTCAAGAAGAACAACACTTCTTATGAGAACTACTTTA GGATATTTGTTCCTGATGGCCTGCCTGTGAAGTCTGAACCCAGAGAGCCTTTAAGGGTTAATATTCTGTTTCAACATATA CAGAACATGATGTCTGGTGAAACTGCTGTGATTGCTGAGACAGGGGACTCATGGTTTAACTGCCAGAAGCTGAAGCTGCC AAAAGGGTGTGGTTATGAGTTCCAAATGCAATATGGGTCAATTGGATGGTCTGTTGGAGCAACTCTTGGATATGCTCAGG CTGTCCCAGAGAAGCGAGTAATTGCTTGCATTGGTGATGGCAGCTTTCAGGTGACAGCACAGGATGTGTCCACAATGCTG AGATGTGGGCAGAAGAACATCATCTTCCTGATAAACAATGGTGGATACACCATTGAAGTTGAAATCCATGATGGGCCATA CAATGTGATCAAGAACTGGAATTACACTGGCTTAGTTGATGCAATCCACAATGGTGAAGGAAAATGCTGGACCACTAAGG TTACTTGTGAAGAGGAGCTTGTTGAAGCAATTGAGACAGCAACAGGAGCTAAGAAGGATAGCTTGTGCTTCATTGAGGTG ATTGTTCACAAGGATGATACCAGCAAAGAGTTGCTTGAATGGGGTTCCAGGGTCTGTTCAGCTAATGGCCGTTCTCCCAA TCCTCAGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0195000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDTRIGSLDTCNPTSNDVGSLPNGTAVSAIQNTAPLPLVTPSEATLGRHLARRLVQVGVTDVFSVPGDFNLTLLDHLIAE PELKVVGCCNELNAGYAADGYARSRGVGACVVTFTLPLICIVGGPNSNDFGTNRILHHTIGLPDFSQELRCFQTVTCYQA VVNNLEDAHEMIDSAISTALKESKPVYISISCNLPGIPHPTFSRDPVPFSISPRLSNQMGLEAAVEAAAEFLNKAVKPVL VGGPKLRVAKASDAFVELADACGYAFAVMPSAKGLVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVG YSLLLKKEKAIIVQPDRVVIGNGPAFGCVLMKDFLKALAKRLKKNNTSYENYFRIFVPDGLPVKSEPREPLRVNILFQHI QNMMSGETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQAVPEKRVIACIGDGSFQVTAQDVSTML RCGQKNIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVTCEEELVEAIETATGAKKDSLCFIEV IVHKDDTSKELLEWGSRVCSANGRSPNPQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43452:SF20
1 589 589 0.0 –
PANTHER
PTHR43452
1 589 589 0.0 –
MobiDBLite
mobidb-lite
1 20 20 - –
PIRSF
PIRSF036565
40 584 545 8.8E-192
IPR012110
Gene3D
G3DSA:3.40.50.970
41 115 75 3.4E-29 –
SUPERFAMILY
SSF52518
45 206 162 2.11E-35
IPR029061
Pfam
PF02776
45 113 69 2.3E-16
IPR012001
CDD
cd07038
48 192 145 7.80174E-73 –
Gene3D
G3DSA:3.40.50.970
116 202 87 2.8E-17 –
Gene3D
G3DSA:3.40.50.1220
214 377 164 7.5E-66 –
SUPERFAMILY
SSF52467
214 368 155 1.18E-34
IPR029035
Pfam
PF00205
225 342 118 2.3E-21
IPR012000
Gene3D
G3DSA:3.40.50.970
383 571 189 4.2E-54 –
CDD
cd02005
390 572 183 1.41913E-88 –
SUPERFAMILY
SSF52518
390 578 189 2.66E-41
IPR029061
Pfam
PF02775
435 560 126 1.7E-14
IPR011766

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0016831
Molecular function Carboxy-lyase activity Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
Subterm of
GO:0030976
Molecular function Thiamine pyrophosphate binding Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0195000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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