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LotjaGi3g1v0195000.3

Overview

Field Value
Gene ID LotjaGi3g1v0195000
Transcript ID LotjaGi3g1v0195000.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Pyruvate decarboxylase; TAIR: AT5G54960.1 pyruvate decarboxylase-2; Swiss-Prot: sp|Q9FFT4|PDC2_ARATH Pyruvate decarboxylase 2; TrEMBL-Plants: tr|A0A061EQM3|A0A061EQM3_THECC Thiamine pyrophosphate dependent pyruvate decarboxylase family protein; Found in the gene: LotjaGi3g1v0195000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:28333651..28337288) extracted from Lotus japonicus Gifu genome v1.2.

ATGGACACAAGGATCGGATCTCTTGACACATGCAACCCCACAAGCAACGACGTGGGGTCTCTACCCAACGGCACCGCCGT CTCCGCCATCCAAAACACTGCCCCCTTGCCGCTGGTGACCCCCTCCGAGGCCACACTAGGCCGCCATCTAGCACGGCGGC TAGTGCAAGTTGGAGTCACCGACGTGTTCTCTGTCCCCGGTGACTTCAACCTGACGCTGCTGGACCACCTCATCGCGGAG CCGGAGCTGAAGGTGGTCGGGTGCTGCAATGAGTTGAACGCCGGGTACGCCGCCGATGGGTATGCAAGGTCTCGTGGTGT TGGGGCGTGCGTGGTGACGTTCACTGTTGGGGGGCTGAGTGTGATTAATGCAATTGCAGGGGCTTATAGTGAGAACTTGC CTTTGATTTGCATTGTTGGTGGTCCCAACTCGAATGACTTTGGTACTAACAGGATTCTTCATCATACTATTGGGTTGCCT GATTTCAGCCAGGAACTTAGGTGCTTCCAAACAGTTACTTGCTACCAGGTCTATTTCTTTATTCCCACTCTCTCTTGTTA TCTATTTATTTATTTTTATGGCTGTGCTAGTGGCTTAGTGGCCAGTGCTCATTTCCCAACATGAAATTAAAAAAAAGATT ATTTATGAAGTTTGCATACGTTAATAGGAAGAAGATGAGAGTCTGATAGGATTAAAATTCCTGATTAAATAATATTTAAG GTTAAAGGTTAGGGTTAGAGAATTGTTTGAGGAAACAAATTAACTTTATTTTGGTTACAAGGAAACAAATAAACTGAGAG TAATACACATTTTCAAGTTCAAAAAAAAAAAACTCATTTTCTGATTAATTAAAAAAAAAATACTAATTTTCTGATTTTTC ATTAATGAAGAGGTAATATAATTTATAGAAGGAAATAACAACTAAGCTAAATTGGAAAGGAAGGAAATAACTAATTAGAA ATAACGGAATATCTGAAATACAAATCTAATTTTTTTTTGAAGGTAAATACAAATCTAAATTGACTAGAAATAAAATAACT GAATAAAAGTCCAAATTAACTAGATTTAATAATATCTAAGTTAATTAGAAATATTTGGTCATCTACTTAAATTTATTGAT GGTCCATTTTGGCCTTGTAGGAATCACCATAAAAGGCATGTTTGGACTATCAGAGACACTCTTTGGGTGTATACCGGAGA GAAAGGAAAAAATAAAAGAGGAGTTAAATAGAAAGATAGAAAATGAAAAAAATAAATGAGAAATGAGTTTTTTGAAATTC AGAACTCATGTAAATATATGATCAATATAATAACTTTATAGGTAGGGGCTGACCAAAAAGAGTATGAAATTAATATAGAA ATATGAATTTCAAATTAAAATAAATGATAGATATTTAAAGTTGATTTAGAAGTATAAAATATCTAATTTTATATTTATTA GGTGTTTTTTAGAATACATGTTTGAAACAGAGACAATTGCTATTTTTGAAGCATTTATATTTTTATTGTATATACTTTTT GGTGTCTATCTTTTGTTAGCTTTTTGAAGTGAAATAAAATAAATGATTTTCTTAAAAACAAATTCTTGATGAAGTGAAAC TTCATTTGGTTGTGTATTAAGTGACTTATGTGCATGGTTTGATTTTGATAGGCTGTGGTCAATAACCTGGAAGATGCTCA TGAAATGATTGATAGTGCAATCTCAACTGCACTGAAAGAAAGCAAGCCTGTCTATATAAGCATAAGTTGCAACTTGCCTG GCATTCCTCACCCCACTTTCAGTCGTGATCCTGTCCCATTTTCTATATCTCCAAGGTAAGTTTTCTAGTTTTTGTACTTT TTAATGTTGCTTCTGGTTTTGTCAAGAATCCAATCATGGAAAATGCTGATAATTCTTTTAGAGCCAGTTTGAGTACAGAC TTATTGGAACTTACTAGAAAATACACTAAATAAGTTTTCATAAGTGTTCTTTGATTTGCACCTAAACGGGTAGTTAGTCT TATTGGTTTTATTGACTTATGATTTGGTGTTTTGCAGATTGAGTAATCAGATGGGGTTAGAGGCAGCAGTGGAGGCAGCA GCTGAGTTTCTGAACAAGGCAGTGAAACCAGTGCTAGTTGGTGGTCCTAAACTGAGAGTGGCTAAGGCCAGTGATGCTTT TGTTGAGCTTGCTGATGCATGTGGCTATGCGTTTGCAGTAATGCCATCAGCTAAAGGACTAGTCCCTGAGCACCACCCTC ACTTCATTGGAACATATTGGGGAGCTGTGAGCACTGCTTTCTGTGCTGAGATTGTGGAGTCTGCTGATGCATACCTCTTT GCTGGACCCATTTTCAATGACTACAGCTCTGTTGGGTACTCACTTCTCCTCAAGAAGGAGAAGGCTATCATTGTGCAGCC TGACCGCGTTGTGATCGGAAATGGACCTGCATTCGGGTGTGTTCTGATGAAGGATTTCCTCAAGGCGCTTGCGAAGCGCC TCAAGAAGAACAACACTTCTTATGAGAACTACTTTAGGATATTTGTTCCTGATGGCCTGCCTGTGAAGTCTGAACCCAGA GAGCCTTTAAGGGTTAATATTCTGTTTCAACATATACAGAACATGATGTCTGGTGAAACTGCTGTGATTGCTGAGACAGG GGACTCATGGTTTAACTGCCAGAAGCTGAAGCTGCCAAAAGGGTGTGGGTAAGTAGCTGACTGAATGTGGTTTCTTGGTA CTTGTCATCCTAATTTTTTTGCTAGTTTTGATGAAAATTTTGTTTACAGTTATGAGTTCCAAATGCAATATGGGTCAATT GGATGGTCTGTTGGAGCAACTCTTGGATATGCTCAGGCTGTCCCAGAGAAGCGAGTAATTGCTTGCATTGGTGATGGCAG CTTTCAGGTTAGTCTACTCTTGCATAACTACTTAAAGTATGATTGTAGCATTTAGCGTTCGAAGTCTTATCCCACAATGT GAAATCGACTATACGGATCACTAATCTATATTAAAGATTAGTCGGTTTTATATTGGCTGCCGAAGAGCTAGAGGCGAAGT TTACTTAAGCATGATTACAATAAAAGAAAATTGTTTTGACTTGGTCATAATCAAATTTCCAAATTTCAACTTATAGAATT ATTTTCTCCAAGTTTTAACTCAACAATTCTTGAATAATTGATTATAATGTATTTATCATTCCTTTGTAGGTGACAGCACA GGATGTGTCCACAATGCTGAGATGTGGGCAGAAGAACATCATCTTCCTGATAAACAATGGTGGATACACCATTGAAGTTG AAATCCATGATGGGCCATACAATGTGATCAAGAACTGGAATTACACTGGCTTAGTTGATGCAATCCACAATGGTGAAGGA AAATGCTGGACCACTAAGGTGAGTTGCAGCTAGCATAACATGAAACATTCTTCTCAAAACTTCATTCATTGCTGTTAAAA TATTAATCTGTGTATGTTTTGTTGCAGGTTACTTGTGAAGAGGAGCTTGTTGAAGCAATTGAGACAGCAACAGGAGCTAA GAAGGATAGCTTGTGCTTCATTGAGGTGATTGTTCACAAGGATGATACCAGCAAAGAGTTGCTTGAATGGGGTTCCAGGG TCTGTTCAGCTAATGGCCGTTCTCCCAATCCTCAGTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0195000.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACACAAGGATCGGATCTCTTGACACATGCAACCCCACAAGCAACGACGTGGGGTCTCTACCCAACGGCACCGCCGT CTCCGCCATCCAAAACACTGCCCCCTTGCCGCTGGTGACCCCCTCCGAGGCCACACTAGGCCGCCATCTAGCACGGCGGC TAGTGCAAGTTGGAGTCACCGACGTGTTCTCTGTCCCCGGTGACTTCAACCTGACGCTGCTGGACCACCTCATCGCGGAG CCGGAGCTGAAGGTGGTCGGGTGCTGCAATGAGTTGAACGCCGGGTACGCCGCCGATGGGTATGCAAGGTCTCGTGGTGT TGGGGCGTGCGTGGTGACGTTCACTGTTGGGGGGCTGAGTGTGATTAATGCAATTGCAGGGGCTTATAGTGAGAACTTGC CTTTGATTTGCATTGTTGGTGGTCCCAACTCGAATGACTTTGGTACTAACAGGATTCTTCATCATACTATTGGGTTGCCT GATTTCAGCCAGGAACTTAGGTGCTTCCAAACAGTTACTTGCTACCAGGTAGGGGCTGACCAAAAAGAGTATGAAGCTGT GGTCAATAACCTGGAAGATGCTCATGAAATGATTGATAGTGCAATCTCAACTGCACTGAAAGAAAGCAAGCCTGTCTATA TAAGCATAAGTTGCAACTTGCCTGGCATTCCTCACCCCACTTTCAGTCGTGATCCTGTCCCATTTTCTATATCTCCAAGA TTGAGTAATCAGATGGGGTTAGAGGCAGCAGTGGAGGCAGCAGCTGAGTTTCTGAACAAGGCAGTGAAACCAGTGCTAGT TGGTGGTCCTAAACTGAGAGTGGCTAAGGCCAGTGATGCTTTTGTTGAGCTTGCTGATGCATGTGGCTATGCGTTTGCAG TAATGCCATCAGCTAAAGGACTAGTCCCTGAGCACCACCCTCACTTCATTGGAACATATTGGGGAGCTGTGAGCACTGCT TTCTGTGCTGAGATTGTGGAGTCTGCTGATGCATACCTCTTTGCTGGACCCATTTTCAATGACTACAGCTCTGTTGGGTA CTCACTTCTCCTCAAGAAGGAGAAGGCTATCATTGTGCAGCCTGACCGCGTTGTGATCGGAAATGGACCTGCATTCGGGT GTGTTCTGATGAAGGATTTCCTCAAGGCGCTTGCGAAGCGCCTCAAGAAGAACAACACTTCTTATGAGAACTACTTTAGG ATATTTGTTCCTGATGGCCTGCCTGTGAAGTCTGAACCCAGAGAGCCTTTAAGGGTTAATATTCTGTTTCAACATATACA GAACATGATGTCTGGTGAAACTGCTGTGATTGCTGAGACAGGGGACTCATGGTTTAACTGCCAGAAGCTGAAGCTGCCAA AAGGGTGTGGTTATGAGTTCCAAATGCAATATGGGTCAATTGGATGGTCTGTTGGAGCAACTCTTGGATATGCTCAGGCT GTCCCAGAGAAGCGAGTAATTGCTTGCATTGGTGATGGCAGCTTTCAGGTGACAGCACAGGATGTGTCCACAATGCTGAG ATGTGGGCAGAAGAACATCATCTTCCTGATAAACAATGGTGGATACACCATTGAAGTTGAAATCCATGATGGGCCATACA ATGTGATCAAGAACTGGAATTACACTGGCTTAGTTGATGCAATCCACAATGGTGAAGGAAAATGCTGGACCACTAAGGTT ACTTGTGAAGAGGAGCTTGTTGAAGCAATTGAGACAGCAACAGGAGCTAAGAAGGATAGCTTGTGCTTCATTGAGGTGAT TGTTCACAAGGATGATACCAGCAAAGAGTTGCTTGAATGGGGTTCCAGGGTCTGTTCAGCTAATGGCCGTTCTCCCAATC CTCAGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0195000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDTRIGSLDTCNPTSNDVGSLPNGTAVSAIQNTAPLPLVTPSEATLGRHLARRLVQVGVTDVFSVPGDFNLTLLDHLIAE PELKVVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVINAIAGAYSENLPLICIVGGPNSNDFGTNRILHHTIGLP DFSQELRCFQTVTCYQVGADQKEYEAVVNNLEDAHEMIDSAISTALKESKPVYISISCNLPGIPHPTFSRDPVPFSISPR LSNQMGLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKASDAFVELADACGYAFAVMPSAKGLVPEHHPHFIGTYWGAVSTA FCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVVIGNGPAFGCVLMKDFLKALAKRLKKNNTSYENYFR IFVPDGLPVKSEPREPLRVNILFQHIQNMMSGETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQA VPEKRVIACIGDGSFQVTAQDVSTMLRCGQKNIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKV TCEEELVEAIETATGAKKDSLCFIEVIVHKDDTSKELLEWGSRVCSANGRSPNPQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 22 22 - –
PANTHER
PTHR43452
1 615 615 0.0 –
PANTHER
PTHR43452:SF20
1 615 615 0.0 –
Gene3D
G3DSA:3.40.50.970
28 227 200 4.3E-64 –
PIRSF
PIRSF036565
40 610 571 1.2E-207
IPR012110
SUPERFAMILY
SSF52518
45 232 188 2.32E-41
IPR029061
Pfam
PF02776
45 221 177 1.4E-32
IPR012001
CDD
cd07038
48 218 171 3.53884E-88 –
SUPERFAMILY
SSF52467
240 394 155 1.29E-34
IPR029035
Gene3D
G3DSA:3.40.50.1220
240 403 164 8.1E-66 –
Pfam
PF00205
251 368 118 2.4E-21
IPR012000
Gene3D
G3DSA:3.40.50.970
409 597 189 4.6E-54 –
CDD
cd02005
416 598 183 2.74359E-88 –
SUPERFAMILY
SSF52518
416 604 189 2.85E-41
IPR029061
Pfam
PF02775
461 586 126 1.9E-14
IPR011766

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0016831
Molecular function Carboxy-lyase activity Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
Subterm of
GO:0030976
Molecular function Thiamine pyrophosphate binding Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0195000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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