Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0202800 |
| Transcript ID | LotjaGi3g1v0202800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase Hakai; TAIR: AT5G01160.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5ZHZ4|HAKAI_CHICK E3 ubiquitin-protein ligase Hakai; TrEMBL-Plants: tr|I1N2T3|I1N2T3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0202800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29625021..29630173) extracted from Lotus japonicus Gifu genome v1.2.
CGAAGGATGTAAGAACCGGACAAACACAGTCCGGTTTCTTTTGTGGTCGAGCCGGTTAACAAAAAGAGCTGCAGCCGTTC GGGTTCTTGTTTTCTCAGTGGGCCTGAGAGGATGAGATTATGGTAAACAAACAAAAACAAAAGTCGGTGACAAAAAAGAA GAAAAAATGTGAAACGCAATAGCAAAACCTAACCTTCCTAACCAAAAATTGGAGCAACCACAGTTGCTCGGAGCCTGTTA CCGAACCACTGTCACCGGCACCGGAGACGATTGACGTTGCCGTCGCCTCCGCCGCTGTAAGACTCGCCGGAGTCGCACCT CTGCAGCCCTTTCCGTCTCCGGAGTCGCACCAATTTCTTTGTTCGTAAGTTTCGTTTCTGATCTCGTCCACGTCGCAGTG GTCGCACCACTTTCTGACCTAGTTTTCTGTTCGCCGGAGTTGCACTCAATTCGCATATCAGTTTATTGGTTTAGTTTTCT GCTTGCATCGCATCCATTTTGGATCTCGTTTTTTGTTGTTTGATGCTGCACTGTTTGGTTTAGCTATCAAGTTTCAACCT GTCCCAAACTCAGTTTTTGCTTTCTGCTTCAATGTCTGGCTTTCTGTTTGAAATTTGTTTGATGCTTTGGTTGAATTTTG TCTGATACCTTGATTGCGGTTTTAGTGTTATAGACTTATAGTATTGTGTTATGTTTTCTTTTCGAAAGCAAAATGATATG TATATTGATAAATGCACAATCTTGAAAAGACTGTAGAGTACAAAGCCCTAGAAAGTCGCAATCTACAACGTAGACAACGT AGATTGAACAAAACCCCAACCAGGAAGCAAAATGGTATTGTGTTATGTTATCTGTTTGGTATTGTGATATGTTACAAGAT TTGTTGTTTATGTAATTGTGAGCCTGTGATCCGAGTTTGCTGTAATTCAGAAATAGCTCTACTGCTCTACAGTTGTGTAA TTTTTACTTGTAGAATGATGTATATTGAGTCTTTTATTCATTATTACCCTAAACCATGCCCTCACCTGTTTGATCACGGG TCCAATTTAATTTAAATAACCATGCTATATGTATATATCTTTAATTTGATTTATGTGATATTTGTTAAACTAAGTATAAA GCTTAGTAGCTTAAAGCACATGGGTAATGCTATTCATTTGTGTTTTTTCATTTGTTTTTCTGTTTGTGTTCATTATTGCC TCTGGATATATGCTTCACTTATTAATTGTTCACCATTTTTTGCTTTTAAATCTAAAAGTGTTCCTTTTTTTTATTTGCTA AAGGAAAGAGGGGCACGTTTTGAAGTTCTACCCTGACAGAAATTCAGATTTGAGGGTATAAGTTGATCGAAATATGCTTC AGATTCGGCTTAGCAAGACTCCTGCCTCAGAAGGGTCAGCGGGGGTGAAGGTGTCACCTGCTGAGACTGTTACAGTTGCA TGCCCTGACCATCTGGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGGGCAGCTACTGCTGCTTCCCTTGTCAAGAC TTTGGGCCGAAGATCCCGCCGCCAGCTTGGCGAGCGAGTACATTTCTGTGTTCGCTGTGATTTCCCCATTGCTATTTATG GACGACTGGTAACTACTTAGACTTGGTAGCTCGTTTTTGAATTAAGATTGCTGCTTGATAGGATGCGCTTATAATCATAG CATGATGTGAATTTTTTTGTTAGTTCCCGGTTTAACTTTTCTCATTCAGGCTTAGTTTCAAAAGTGGGTTATTTTCCTGG ACATATTCTTTACTCTAGCCTTAGCCTGTGTTCCCTCTTGAAAAATATAATGCAGAGAAAATAGTAATAAATGTATCGAA GAGAGCATGATAACTGATTTATTGAACAATTATTAAGTTGAATAGTTGACAGGCTTATCTTTCACATATATATGATTTTT TAACTGAAGCTTTTTTGTGAATATCAGCTGTAGGTTCTTGTGTGCCTTTTGACTTTTTCTTTTTTGTTGTATATTTGGGG TTATTAGCTGCATTTTAATATATCACAATAATGGGCCAATGATTTCTTTGCGGCTTTGCATTTTCATCTGAAATTTGGTT GAAATTGACAAAATGTATCTTATCACTGTAAATATGCATTTTTTCTTCTCTTGTAGTTTGTTTGCAGTTTAGAGTACTAA ATGTTAAGCATGCTTTCAGAGTTGGACCTGTTTAGGGATATGGCTGTCAGGTTTAACCTTTAGATACAGTGTTTGTGTTC TTTTCCCGCCCGCTGAAGATGTCTTAAAACATGTTATATGTTGATGTTGGCTTACAGTAAATTAACAGGTTCATGTTCAT GCAGAGCCCTTGTGAGCATGCTTTCTGCCTCGATTGTGCTAGAAGTGATTCACTGTGCTACCTGTAAGGATTTCTTATCT TCTGATCTTCATACAGTAAAACAATGATGAATGAACACTAGTGGCTTTTGTATGCTTTTACTTTTAACCGATTCTATGTG TTCATATTATAGAACTTCACTTTGGTGCTTAATATTAGTTAAATACTTAATCTAAGAGATCTTAGTTTCAGCATAACAGA GACCACTTGCTTACCCATCATTTGCACCTTATATGTGGAGGGTGGCATATCTAAATTTGTACATGTCCGTGGGGCCAGCT GCTTGAAAATCATAGTCTACCCACTTGAGTAGGTGAGAGTGGCGTGTTAGAAATTCTTAGAATTCGAGTTAGACCTAACT CTATCCCAAAAAGCTAGCTCGTAAGGTGAGGATTGCCAAAGCCTTTGTAAGCCCTGTGCTGGCCTTATCTCTAGTCAATG TGAGATTTGAACATCAATATAATATAAAAATTGTTCACGCGTCTTCACCTAACAGTTTTAACTTTTGAAATTGTTGGTTC ATAACATGGTGTTTGGGCTTCTATGACCAAGTTGTCTAGAGCTTGATCCTTGTAGCCTACATTCTTCCATTAAAAAAAGT TGAATTTTAACACATGGCGGATGGGCCTATGCGTTGTCTACGCTTCAAGACCAAAGGGCTCTTGCATGAGGATCGTGTTA GAAATATCATGTAAAAGATTATTCATGTGGCTTCATTTAACAACTTAAGCTTTTGAGATAGTTAGTTTATTACGGTATAT GAAATAGTGCATAGAATAGTGAGATAGTTACTTTCTGTTTTGAAACGTTGGTGGACTTTTCTTTTTTAATCATCTCAAAC TTCTGAGTTCTTTTAAACTGTTCTGAGTCCCTTTGTGGCTTTTTTTATTCACTGTCAGTCTAGTTTCTTTTCTTTTTGTC TCTGTTTCTTAAACTCATCTTCTGTTCTCTTTGACTTTCGGCCTTTGTTGGTTACCTTGCCTTTTCTTGGTATTTAATTG TATGTTTTGTTTAAGACACTCATGACTTTTATTGTTAGTTATGAATGTCATAAATTATATGAATTGTATAAAATTCAACA TTGCGGTCATCCCGTTATGCGCGCTATATTGCATTACTATTTTTGGGGTTGGCCACTATCCACCGCTATTCAGATTGACA ACACGGGTGTAGAGTTTAATGCTTGCAGTCTTCATTCTCATAATAACTTCAATTTTAGCAAAGGTGTAGAGTAGATGTAT GAATTCTTCATGATTTAAACCCAATGGACTCTTTTGTAAAGGGGCATGTTTAATTTAAAATCATTCCAATGCTTTTATTG AATAGCTTAAGATTTTGGAATACTAAGTTTTTTATATCAGTCGTAGTGAGTTTGTTTGGCAATTGATAGCTTTCCATTTA TAGCAGTCCTGTTTTGTCTATAACACATGATGTCTATGTAATACAGCGGTTTTCATCTTCCTTTGAACACAGGTGTGATG AACGAATCCAGAAGATTCAGACAATCAAAATGATGGAAGGGATCCTCATATGTGCAGCTCCTCATTGTCTCAAGTCTTTT ATGAAGAGGGCTGAATTTGAATCTCATATCCAAGACAACCATGCTAACCTTCTCCGTTCAAATGCTGATAAAGAGGATGG AAATGAGTCAGAGGCTCAGAGCGTGAGGCAACCTACAGCTTCAGATTCCACCGCTCGAGGCCCCCAGAGGCCAGTTTTTT CTCCTGGTTCGAATTCCCAGCAACATGACCTGGAAGACAGAACTCGTCGTCAGCCACCAAGAGATCAAGCTCCTTCACGG CCAACTCTGCAGCAGCAAAAGCCACCATTTTTTGGTCAACAACATCACCCTTCAGATACCTTGTCTGGTTCTGTTGGAGG TATACAGCAAGGCTTTCATCAACAAAGTTTTGACATGCAGCAGCATCCCCCACAAGAACCTTCCCAGCAAGCAGATACCT CATTTCAGGAGTATCCAACAATGCACTCTGCACAACCTCCAAATATGCCCTCAATGGTTACTTCAAACCCAATGCTCAAC CCGCCAGTGCCATTCGGTTACCCCCCTTACCCGCTGCCCGAACGGGCTCAACCATTTTATGCTGCTCCTTATGATATGCC TAGGCAGGACTCGACTTCTGATATCGGTGGGGACCAGAGTCAATTACCACCGGGTTTTCAAGGGAATTATGCCCAGCCCT GGCATGCGGGTGCGCCTTTCGAACAAGTTGCAGATCCAAGGGATGCCAAAGGTGTACTGGCATCACAGCCAATGCATCTT CCTCCACCACCCCCACCTCTACCTCACATGTCACATTTGAAACAGAACTACTATTCTGGTGAGCCTGGGCATGATGGTCA GGGTTATGGTGGGTGGCAGCATGATAGCCGTGACAGTTTTGGCAGCCAAGGCTAATAAGGTTCCCAATCTTTAGTTTCCT TAATTTGGATACTTTAGAAGCTGTTTCTGCATGTGTATGCATCTGTTGAATTGCTGAACATCAATTAAACTCGCTTATGG TTTTGCTTTTTGTGTTTGTATATTCTAAAATCGAATATTTTCCTTTGTTGATTATCGAAGGTCACCTGACGATTTATGTT CCCATGTTTGGTACTGGAATTACGACACAAGAATTTAATTGAATGTGTTGCAATGAAGGGGATCAATTATTTGGGACGGC AAATCAGAATGATTTAAAATTTTATCCAACTGATTCAAATGCCGCTGCATTCTTGTTTAACCAACTTAAGAAGGGACTTG AATCTTTGGAAAATTATCTTCATAAGAAATCTC
CDS sequence (LotjaGi3g1v0202800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCAGATTCGGCTTAGCAAGACTCCTGCCTCAGAAGGGTCAGCGGGGGTGAAGGTGTCACCTGCTGAGACTGTTAC AGTTGCATGCCCTGACCATCTGGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGGGCAGCTACTGCTGCTTCCCTTG TCAAGACTTTGGGCCGAAGATCCCGCCGCCAGCTTGGCGAGCGAGTACATTTCTGTGTTCGCTGTGATTTCCCCATTGCT ATTTATGGACGACTGAGCCCTTGTGAGCATGCTTTCTGCCTCGATTGTGCTAGAAGTGATTCACTGTGCTACCTGTGTGA TGAACGAATCCAGAAGATTCAGACAATCAAAATGATGGAAGGGATCCTCATATGTGCAGCTCCTCATTGTCTCAAGTCTT TTATGAAGAGGGCTGAATTTGAATCTCATATCCAAGACAACCATGCTAACCTTCTCCGTTCAAATGCTGATAAAGAGGAT GGAAATGAGTCAGAGGCTCAGAGCGTGAGGCAACCTACAGCTTCAGATTCCACCGCTCGAGGCCCCCAGAGGCCAGTTTT TTCTCCTGGTTCGAATTCCCAGCAACATGACCTGGAAGACAGAACTCGTCGTCAGCCACCAAGAGATCAAGCTCCTTCAC GGCCAACTCTGCAGCAGCAAAAGCCACCATTTTTTGGTCAACAACATCACCCTTCAGATACCTTGTCTGGTTCTGTTGGA GGTATACAGCAAGGCTTTCATCAACAAAGTTTTGACATGCAGCAGCATCCCCCACAAGAACCTTCCCAGCAAGCAGATAC CTCATTTCAGGAGTATCCAACAATGCACTCTGCACAACCTCCAAATATGCCCTCAATGGTTACTTCAAACCCAATGCTCA ACCCGCCAGTGCCATTCGGTTACCCCCCTTACCCGCTGCCCGAACGGGCTCAACCATTTTATGCTGCTCCTTATGATATG CCTAGGCAGGACTCGACTTCTGATATCGGTGGGGACCAGAGTCAATTACCACCGGGTTTTCAAGGGAATTATGCCCAGCC CTGGCATGCGGGTGCGCCTTTCGAACAAGTTGCAGATCCAAGGGATGCCAAAGGTGTACTGGCATCACAGCCAATGCATC TTCCTCCACCACCCCCACCTCTACCTCACATGTCACATTTGAAACAGAACTACTATTCTGGTGAGCCTGGGCATGATGGT CAGGGTTATGGTGGGTGGCAGCATGATAGCCGTGACAGTTTTGGCAGCCAAGGCTAA
Protein sequence (LotjaGi3g1v0202800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQIRLSKTPASEGSAGVKVSPAETVTVACPDHLVLADLPVAKGIGAATAASLVKTLGRRSRRQLGERVHFCVRCDFPIA IYGRLSPCEHAFCLDCARSDSLCYLCDERIQKIQTIKMMEGILICAAPHCLKSFMKRAEFESHIQDNHANLLRSNADKED GNESEAQSVRQPTASDSTARGPQRPVFSPGSNSQQHDLEDRTRRQPPRDQAPSRPTLQQQKPPFFGQQHHPSDTLSGSVG GIQQGFHQQSFDMQQHPPQEPSQQADTSFQEYPTMHSAQPPNMPSMVTSNPMLNPPVPFGYPPYPLPERAQPFYAAPYDM PRQDSTSDIGGDQSQLPPGFQGNYAQPWHAGAPFEQVADPRDAKGVLASQPMHLPPPPPPLPHMSHLKQNYYSGEPGHDG QGYGGWQHDSRDSFGSQG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 391 | 391 | 1.3E-132 | ||
| PANTHER | 1 | 391 | 391 | 1.3E-132 | – | |
| Gene3D | 69 | 120 | 52 | 4.0E-19 | ||
| CDD | 70 | 106 | 37 | 2.47766E-18 | ||
| ProSitePatterns | 88 | 97 | 10 | - | ||
| ProSitePatterns | 125 | 148 | 24 | - | ||
| MobiDBLite | 155 | 242 | 88 | - | – | |
| MobiDBLite | 166 | 195 | 30 | - | – | |
| MobiDBLite | 209 | 242 | 34 | - | – | |
| MobiDBLite | 359 | 418 | 60 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. | ||
| Molecular function | Ubiquitin protein ligase activity | Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. |
Expression pattern of LotjaGi3g1v0202800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…