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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0205100 |
| Transcript ID | LotjaGi3g1v0205100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein; TAIR: AT5G61190.2 putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain-containing protein; Swiss-Prot: sp|O59811|REI1_SCHPO Cytoplasmic 60S subunit biogenesis factor SPCC550.15c; TrEMBL-Plants: tr|V7AMM2|V7AMM2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0205100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:30096243..30103734) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGTAAGAGGCTTGCACAAGAGTGAATGAAACGACTACCAAACCTGCGTTCACTAGGCTGCAACACATTCATCGTCTC TCTTCTTCTTCACCCCCATTTTGTTCCTCTCCTTCATCTTCCACCAAACCTCAAATCCCAAATCCACTCTCAGTCATGAA CTACGACTACACCAACTACAACCACCACCACCACCACCAACAACAGCCACATTCCTATGAATTGCAGTACGACCCATCTC AGGTTCAACCCTACGACCCATCTCAGATTCAACCCTACGACCAATCCTACGCATATCAACAACCCTATTACGCCTACAAT CACCAATACCCATATGTCGCTGATACCCATCAACCCCATCACCTTCAATTCCAGCCTGAACCCTCTCCGGTTCACCCCCC TGGTGTCATCCCAGCCGCTGCTGAACCGGGTCTCGCCAGACCTAGCCATGGCTCGGTAAAGTTTCCACCTTTTCCCCTTT TTTGGGGTTTTTATTGAATTGGGTCTATACCCTTTTGAATTCTTTGTTTTCTTGATTTAGTTGAGGTTTTTTAGTTAATG GGTATTTTAGTTTGTGGATTTTTATAGCGAAAATGTTGTGCTTTAAAATAATAATTGGGGGGTTCCATTGTGTGATTGAG TTGATTTGGCTTAGAGTAATGAGTAATTGGGACTGACTATGATTGTATTTAGTTATTTACCTCTTGATTTGCTTGAAATT GGGTTTCTTTTGTCAAATTTATCAAACATGGGATGGTTGGTGAGTGGTGACTGTTGTTGTGCTGATAGTTTGCTTGTTGG TGAATGTGAGGGTGGTGACTGGTGTGAGTTATTATTTTAACTGATAAGTGGATTGCTCAGTGTGAATACTGTGTGATTTT TATTTTTTTCTGCTTGTGTGTCCACTGAATTAGTGTTATTGGCTTCTTGTTGGTCCTTTTAGCGCTGCTGCTCAACTTGT CTTGTCGTTTAAACCAGTGATGTCAATAGCCCGCCAATAGGGCTATAGCATAGCACCCTGGGGGTTCACCGCTATTGTCC GCTCGCAATAGTGTTTTTTGGGCTTTCCGCTACGCTACGCTATCTGCCATTAACAACCCTGGTTTAAACACCAGTAGTGT GTATCCAAGTTACAAGGGATGAACTTTATTTCAATGTTGTCATTCTCAACAAATAGTCAAATACTGCTATATAGTTTATC ATTCTTTTAGAGTCTCTGACTCTGGGTGTTGTTAAATGGGGGCCATGGCGGTATTGTGTGGTGATTTTATGCCAAAATGA CCTTCTGAGGTCACGTATGGTGGCTTTTACATGGCGTTTTCTATTTCATGCCGGGTATGGCGACCTCTCTGGAAAATAGC ACCAAAGTCAACTTCAAAAAGGAAAAAAAGGGACGGGTAACACAGATCTGACCTGTTTTACACCCTAAAAGCCATTTTAT ACCCAACTTACCATCCATATCTCTGCCACCTCTTACTCGCAATTACGTGCTATCTCTCACCCGCGCTTCTGTCATCCCTC ACTCACACATGTCTGGTGAATATCCCATCTCCAGCATAATACCATTGTCCTATTTTTTTCTTTGTTTTGAGTCTCTATTC CGTGTCTGTGGCCATGTGTGTCAATACACACACGCGCGCACACACATACGTGACACACATATATATGTAACATACATATA TAAATAGACATACTTCCATAGGCGGAAGCGCCATTTGGCTTGCTTCCATGAACTTGCATATGCCATCAAATATTGATAAC GGTAGAGTCTTTCTTCTGAATCTCTCTTTCTCTCTCTATTTTTATTTTTTTATGCTATGGGGTGTGTATTCTTTATCCAT GTCATTGTAGCTTTAAGTCATGGAGGAGGGATGGAGAGACCATATAGTGGTTCTATCAAAAGTGCTTTTGTTGTATTGGT CTAACATCGGTAACTCACCTAAAACAGCTCCCAAGCCTTTCTGTGATTTTTTATGACCTGTGCCACATTACTGTATCTGG AAATTTGACCAACAACAACAGCCAAGTTTTATCTTCCTTGGTGGGTTGGCTTTATGGAATTATAGATCAATTGTTGCAGT CCAGCTCAATCAAAAACCAAATTTTTATGTGAAGTAAGGTTTTGCTAATAGTTTCTTGCAAGTTTTCTTTTCCTTCCTTC CTTTTAAATTGGACTATCTTTTAATGATGCAAAAACTCATTACCTTGAGGTTTAGTTGTTATCGTTGTGTTATGAGTGTC TATATATATACATTGGTGTACTCCTGATTCTGCTAACTTTGCCCAATGATCATGGCTGGGAAAAAAGAAGTTCCCTGGTA GCTTCTTTTACTTATGTCTCTTACACTGACTCTTCATTTGGGTTCAAAGAGAAAATGAGATGATAGAGAATGGATAGAAA GAAAGTGAAGAGAAAAAAACTGAAAAGAACATGAATGGATTTTTTATATAATGTAAAATAGTGGAGAATAAAAGTAAAAT GCTATTGCCATTTGCTTGGTTGGATGGAAAAGAGAGAAATAAAACAAATACAATTGATATAATGTCTTTTTAACCCTTGA TAACTTAAAAATAATCAAGTGGACTCCATATTAGATGAGAGACAAATTGATGTGTAAAGTTGAAATTGTCTCTTTGGAAT TTGTGTTTTCTCTCCATTTAAGAAGAGAAAACTCTGAATAGGCCCATATCTATTGCATCTCCTCTCCATTTTCTCTCCGC CCAAATTCAATCATATCAATTTCTACTCAACCAAACACAGTGAAACCAGATTAGTAGAAACTATGTTATGGAATTATCAC ATCTTTGTTCCAATTCCAAAATTAAGGATTAGTTTATGTTTAGTGCAGGTTCTGCATTTAATATTGCTAAGGTTATGGTG AGATTCAAAGAGGTGCATGTATTCTATGCCAATCAACCTGAGCTTTTTATTAGCTCTGGCAAGTTGCTTTGCTGAAACAA GATGATTTAAGATAGATTGAGTCAAAGTATGCCATTATTTTATTTAATTCAACATATTTGGTGCTAGCTAGTTTCTTATT TTACTACCAGAATTTAAAGATGTAAACAGAAAAGGCTGATTGAAGATTTTGCAACACTTTAACTTTCAAACATTTTGTTA TTCTTTTAGAGAGAATATCTTGCTGTGCTCCTCAGGCTCTTTTCGGACTTTCTCTGGACAAAAGGCTGATACTGGAATAG GTATTTTATCCTCGGTTTCCATCTAAAATATTCAGAGGATGTTGAGAATTCTGCAAACTTGGCCACAACATCCTAGAGTG ACCAGATAAAGGCATTAGTTACATGAAATACGCTCATAAGAAATTGTGGTTCTTACCTTTAATGCCACAGTAATGCCGCA TTGTGGTGGGTCTTTGCTGGTTGCTTTAGAGTTGATGTGGGCGTAAGATCATCCTATTTCTCTTCTTAACTGTCTGGCCT TTAAAGTACCAGTGCTGTGCCTTACAGTTTAGGAGAAGAAACTGTAAAGTCATCCTGTTTCTCTTCTTAACTGTCTGGCC CTCAAAGTAGCAGTGCTGTGCCTTACAGTTTAGGAGAAGAAACTGTAAAGCCATCCTGTTTCTCTTCTTAACTGTCTGGC CTTCGAAGTAGCTGTGCAGTGCCTTATAGTTTAGGAGAAGAAACGACAAGGTCATCCTGTTTCTCTTCTTAACTGTCTGG CCTTCAAAGTAGCAGTGCAGTACCTTACAGTTTAGGAGAAGAAAGTTTGCTCTTTTGGTTATTCTTTAGATATGATTTTT GTTTGATATGCTTTATTTCTTCTGTTGTCAGAGGGTGTTTCATTTTCAGTTTCAGACTTAGGGAAGCATTGAGCATGTTC TAAGGACCTTAAATTGACACTTGTCAAGGATTGCTTGATCAACAGTATCTCGAGGCTGACACGATTTGGCCAAAGTTCCT GGTCAATGGATGGGTATATTGGTTGATTAGAAAATTAGAAAATAAATTATATGTGAACGTAATGAGGAAAATCCATGCTT GTCATATGGTTTATCAACAAGAAAACTAATTTCTATATTCTATGTGGTGTTTTGTATGGGCACATCCAAGCATACTTCAA TACTGGTAGTGTTTCTATATTCTATGTGGTGTTTTGTTTGGGCACATCCAAGCATACTTCAATACTGGTAGTGTTTCTAT ATTCTATGTGGTGTTTTGTTTGGAGATCAAGTGGAGAAGGATAATTGTAAGCATGCAGCAACATGTATAAATGCTGGATT CAATGGTCATGATTAATCTGCATATGAATTTTGGAATAAGAGATGGTGACTCAGGGCATCTGGGACCATCACTGATTAGG GGCATTCAAACTGAAGGAAAGCACAAAAGACTAAAATTGTAAAGCTAAGAAGCAAAGGTTTTGATCAAATTGTCAAGTTG TTTTTCCATTTTATTTTATATTCTGGGATCCAACTACCTTTTTTTTTTTCGAAAGCAGAAGGAATTTCCAACTGCCCTTG TTATAATGCTTTTTGATGAGTACTTCAAGCATTTAACTTTATTGAAATGATATTTAGGAGTTTTTCAATATTTGAAATTT TGATTTTTTGATACATAGATGAAAATATATGCAAGAATTGGAATGATTCTTGATATTAAGGATGCCTCCTTGGAAGCAAT TTCAGGGCCATCACAGTCTCTTCTATTTGTTAATGTATGTGATAATTTAAAATGACTTTCTATTTCAAAGTTTTCTTTGA TTATCACCTGGCTCAATCAGAGATTCACTTTCTCGATCAGTTTTATCTGTCATTAATTTTTTTTTCTCCAGTATTTGCTA GCAGTTTTTTACTAACTGACTGACATTTCGTCATGTTGACAGGTTGTTGTGGATAGGATGAATTCTCAGTATTATAACTG TTTTCTTTTACTTCTCTCTCTTTCTGAGTATCACAATCCTTGTTTATGATTTCAATTTTATATTTCATTCCAATCCTTTC CTTTCAAATTTCCAATGTATTATCTGAATATTGTGAGGATATCCATTTATGTTTGAATTCACGTGAAGTTCTTATTTTTC AGGCCGGGCCATCTCAATATAGAGGTAGGGGTGGCAGGGGTGGTAGACCATTTAGACGGGGTGGCCGTGGTCGTGGTCGA GGCCAGTTCAATCATGGTAGGGGACATGGGGTGGGTGGTGGTGGACACTTTCCATCCCATACTTCAGGACCTGCTATTTC TGATGTGCCAGGTGCACCTGCTGCTGCTGGAGCAACCTCATCAATCTCTGGGCAAATGACAATACCTAATTCAGCTGAAG TGCCAGCTGCATCTGCTCAACCTCTATCACGTAAGATGTATTGTGAAGTTTGTAAGGCTGAGTGCAACAGTCCAGAAATC ATGGAACAACATAAGAATGGAAAGAGACATAAGAAGAATATGAAAATACATGAAGAATTACAGAGACGCAATAATTTAAA TGGACAACAGAGTGGACAGATTCCTACATCTCAAGTGAATTTGGCAGATCATCCTCAGAAAGTTCAGAACTCTGAGAAAA AGGAATGCCCCACAGAAAATATGGGCTCTGAAATTACAGCTGATTATGACAAGAATGAAATTAAGTTGCAGAATAATGTA GGAGAGACTTCTGAAGTTCCAGCTGAAGGGCCTGAGGGGAACACCACGGATAACTCTGCTCTAGGAGACCGTGGATTGAA GCGTAAAATGAGAGGAGGAAAAGTACGTAGAAACGCGAAGAAGACTACAGCACAACTTTCAGAAGCTGAGCAACCTACAA CTTTTATTTGTGAACTCTGCAATGCTAAATGTGAGTCCCCTGCTGTTTATAATAGTCATATGGCTGGGAAAAAGCACTTA GCAAATCTGAAGCGAGCAAATGGTTCCCAAGCTTTGCCTGGAGCAGGTAAACAAACTTCATCCACAGTAGTTCATCAACC TTTGCCTGGAGTATCAGGTCTTCAAGCACTATACCCATCCGACGTCAACGCTCTGGCGAATGCAATTAATACTCAAGTCC AACAAGGTGATAATGATCCACAGATACTTTTGGCTCAGCTTCTGATGACTGTGATATCTCAAGGACAAGGGCAAGCACCA GCAATTCCACCCACAGGACCTTTGGCTGGTCAGATACCAGAGCCCTCATCAGTGCCCGGATTAAGTCATGAACAACAATT GGCACAAACACAAGTGTCAGACATAACAGCACATGTTGAGATGGAAAATCCTGCTGGGGAAACAAATAATGAACTGTTAT CTGAACAACAATTGGCACAGACACAAGTGTCGGACATAACAGCACATGTTGAAATGGAAAATCCTGCTGGGGAAACAAAT AGTGAACTGTTATCTGTCTCAACAGAGTTTAATGCACTGGCAGGTTCAAGCGTTACCCAAATAGAAGGTGGAAGTTCTGA AACTAAGCCGTCCCAAGTATAGTTCAGGTATGACAATGGCAGACATCTCGTAGCAGGACCAAAGGAGATTCAACCATTCT TCTCTCCTTTTTTTTTTGTTTACCTTTGGTGTTAAAGACTTATTATATGTTGTTGGGTATGAATATTGTATGTTTTGCTC ACATGGATGTTAACATGTGCTAGAAATCCTTTACATTGCTGTTATGTGCAAACCCCTTTTTTAAATGTCCGTTGTTGTGA CAGCTTGGTGAAATGATGTTTTAACATTTTCATGCTACAATGAGCGCATCATTGAGGGAGTTTGATGGTACTAATGTTAT GAAGCTTTTGCATATGGATAGGTTTATTTTTGTCTGGTTAATGTAACCATTTCATTTACACAAGGTTATTAAAACCTTAA GCATTCAGAAGTTCGAGGTTACAAACAAGTTTGAAGAGTGAAGCATTGCATTATTCATGAGGGTATGCTAAAGCAAAGAT GTGAAATTGTGCAGGGTATAATAAATTTTCCCTAAAAAGTCCATAATAGAGTTGTATTCAAATGATGTATTTGCTTCTCT TAAAATTCCTATACAATCTACTTCAATTGGTCATTATTGATTTTGTTTAATATGGTTTAACTTTTGCCTCCCTTGGCCAT TCTTTTGTAGTTTTCTCCATGAACATGTATATTTTATCGTGTTCATATTTGAGTTCATGACTTCTCTAAGTTCAACCATA TTTTTGTTTTTTATCGCAATCATACGTTTGGTTAAACATGTGAGTAGTAAGTAACACATGTCGAGAACCCTTTTGGCGGG GTTAGGTCACGCGTAAAAATAGAGGTTACTATGGATATTTGAGTTTGGGTAGGATTTTTCCATTCCATAAATTTTCACAT CTGACAACTGAAACAAACTGTTTGGATTGATAGAAATTAGTTCTAAACAGACTCGTGAAACCAAACAAACTAAACCGTTC TTGTGTTGAGGTCGAATTGATCTTGTTGGTCGGGTCTACCTGACTTATGTGTAACTCTAATTATTTAAGTTTCTATCTAA ACAAACATAACATGAAATAAAATGAACGGATGATATAAGTTGAAACATTTTC
CDS sequence (LotjaGi3g1v0205100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTACGACTACACCAACTACAACCACCACCACCACCACCAACAACAGCCACATTCCTATGAATTGCAGTACGACCC ATCTCAGGTTCAACCCTACGACCCATCTCAGATTCAACCCTACGACCAATCCTACGCATATCAACAACCCTATTACGCCT ACAATCACCAATACCCATATGTCGCTGATACCCATCAACCCCATCACCTTCAATTCCAGCCTGAACCCTCTCCGGTTCAC CCCCCTGGTGTCATCCCAGCCGCTGCTGAACCGGGTCTCGCCAGACCTAGCCATGGCTCGGCCGGGCCATCTCAATATAG AGGTAGGGGTGGCAGGGGTGGTAGACCATTTAGACGGGGTGGCCGTGGTCGTGGTCGAGGCCAGTTCAATCATGGTAGGG GACATGGGGTGGGTGGTGGTGGACACTTTCCATCCCATACTTCAGGACCTGCTATTTCTGATGTGCCAGGTGCACCTGCT GCTGCTGGAGCAACCTCATCAATCTCTGGGCAAATGACAATACCTAATTCAGCTGAAGTGCCAGCTGCATCTGCTCAACC TCTATCACGTAAGATGTATTGTGAAGTTTGTAAGGCTGAGTGCAACAGTCCAGAAATCATGGAACAACATAAGAATGGAA AGAGACATAAGAAGAATATGAAAATACATGAAGAATTACAGAGACGCAATAATTTAAATGGACAACAGAGTGGACAGATT CCTACATCTCAAGTGAATTTGGCAGATCATCCTCAGAAAGTTCAGAACTCTGAGAAAAAGGAATGCCCCACAGAAAATAT GGGCTCTGAAATTACAGCTGATTATGACAAGAATGAAATTAAGTTGCAGAATAATGTAGGAGAGACTTCTGAAGTTCCAG CTGAAGGGCCTGAGGGGAACACCACGGATAACTCTGCTCTAGGAGACCGTGGATTGAAGCGTAAAATGAGAGGAGGAAAA GTACGTAGAAACGCGAAGAAGACTACAGCACAACTTTCAGAAGCTGAGCAACCTACAACTTTTATTTGTGAACTCTGCAA TGCTAAATGTGAGTCCCCTGCTGTTTATAATAGTCATATGGCTGGGAAAAAGCACTTAGCAAATCTGAAGCGAGCAAATG GTTCCCAAGCTTTGCCTGGAGCAGGTAAACAAACTTCATCCACAGTAGTTCATCAACCTTTGCCTGGAGTATCAGGTCTT CAAGCACTATACCCATCCGACGTCAACGCTCTGGCGAATGCAATTAATACTCAAGTCCAACAAGGTGATAATGATCCACA GATACTTTTGGCTCAGCTTCTGATGACTGTGATATCTCAAGGACAAGGGCAAGCACCAGCAATTCCACCCACAGGACCTT TGGCTGGTCAGATACCAGAGCCCTCATCAGTGCCCGGATTAAGTCATGAACAACAATTGGCACAAACACAAGTGTCAGAC ATAACAGCACATGTTGAGATGGAAAATCCTGCTGGGGAAACAAATAATGAACTGTTATCTGAACAACAATTGGCACAGAC ACAAGTGTCGGACATAACAGCACATGTTGAAATGGAAAATCCTGCTGGGGAAACAAATAGTGAACTGTTATCTGTCTCAA CAGAGTTTAATGCACTGGCAGGTTCAAGCGTTACCCAAATAGAAGGTGGAAGTTCTGAAACTAAGCCGTCCCAAGTATAG
Protein sequence (LotjaGi3g1v0205100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNYDYTNYNHHHHHQQQPHSYELQYDPSQVQPYDPSQIQPYDQSYAYQQPYYAYNHQYPYVADTHQPHHLQFQPEPSPVH PPGVIPAAAEPGLARPSHGSAGPSQYRGRGGRGGRPFRRGGRGRGRGQFNHGRGHGVGGGGHFPSHTSGPAISDVPGAPA AAGATSSISGQMTIPNSAEVPAASAQPLSRKMYCEVCKAECNSPEIMEQHKNGKRHKKNMKIHEELQRRNNLNGQQSGQI PTSQVNLADHPQKVQNSEKKECPTENMGSEITADYDKNEIKLQNNVGETSEVPAEGPEGNTTDNSALGDRGLKRKMRGGK VRRNAKKTTAQLSEAEQPTTFICELCNAKCESPAVYNSHMAGKKHLANLKRANGSQALPGAGKQTSSTVVHQPLPGVSGL QALYPSDVNALANAINTQVQQGDNDPQILLAQLLMTVISQGQGQAPAIPPTGPLAGQIPEPSSVPGLSHEQQLAQTQVSD ITAHVEMENPAGETNNELLSEQQLAQTQVSDITAHVEMENPAGETNSELLSVSTEFNALAGSSVTQIEGGSSETKPSQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 16 | 491 | 476 | 1.6E-90 | – | |
| PANTHER | 16 | 491 | 476 | 1.6E-90 | – | |
| MobiDBLite | 73 | 166 | 94 | - | – | |
| MobiDBLite | 112 | 129 | 18 | - | – | |
| SUPERFAMILY | 182 | 224 | 43 | 1.33E-10 | ||
| Gene3D | 184 | 228 | 45 | 4.9E-11 | – | |
| SMART | 189 | 223 | 35 | 0.0029 | ||
| SMART | 192 | 216 | 25 | 22.0 | ||
| Pfam | 193 | 216 | 24 | 1.2E-6 | – | |
| MobiDBLite | 288 | 311 | 24 | - | – | |
| MobiDBLite | 288 | 307 | 20 | - | – | |
| Gene3D | 325 | 376 | 52 | 1.2E-11 | – | |
| SUPERFAMILY | 336 | 372 | 37 | 3.23E-9 | ||
| SMART | 338 | 372 | 35 | 1.5E-5 | ||
| Pfam | 341 | 365 | 25 | 1.1E-8 | – | |
| SMART | 341 | 365 | 25 | 0.14 | ||
| MobiDBLite | 443 | 476 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0205100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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