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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029062
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 72 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.784s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0021599.1
n.a. PREDICTED: pyridoxal biosynthesis protein PDX2-like [Cicer arietinum] gi|502147413|ref|XP_004506773.1| chr0 8736495 8742103 -
3 domain predictions
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Lj0g3v0021599.2
n.a. PREDICTED: pyridoxal biosynthesis protein PDX2-like [Cicer arietinum] gi|502147413|ref|XP_004506773.1| chr0 8736495 8742108 -
3 domain predictions
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Lj0g3v0058939.1
n.a. PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max] gi|356567431|ref|XP_003551923.1| chr0 19452834 19470394 -
3 domain predictions
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Lj0g3v0058939.2
n.a. PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max] gi|356567431|ref|XP_003551923.1| chr0 19452834 19470394 -
3 domain predictions
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Lj0g3v0103749.1
n.a. PREDICTED: protein NtpR-like isoform X1 [Cicer arietinum] gi|502106503|ref|XP_004492963.1| chr0 44263003 44264836 -
3 domain predictions
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Lj0g3v0111539.1
n.a. Anthranilate synthase beta subunit 1 [Theobroma cacao] gi|508709407|gb|EOY01304.1| chr0 48463743 48464833 +
3 domain predictions
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Lj0g3v0178769.1
n.a. PREDICTED: gamma-glutamyl hydrolase-like [Glycine max] gi|356549636|ref|XP_003543198.1| chr0 86699654 86705640 -
3 domain predictions
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Lj0g3v0270759.1
n.a. PREDICTED: probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502138893|ref|XP_004503568.1| chr0 140230501 140235701 +
2 domain predictions
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Lj0g3v0281729.1
n.a. PREDICTED: CTP synthase 1-like [Cicer arietinum] gi|502154191|ref|XP_004509615.1| chr0 146084319 146088177 -
3 domain predictions
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Lj0g3v0332949.1
n.a. PREDICTED: CTP synthase-like isoform X1 [Cicer arietinum] gi|502182968|ref|XP_004517030.1| chr0 174235745 174241935 -
3 domain predictions
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Lj0g3v0338049.1
n.a. PREDICTED: gamma-glutamyl hydrolase-like [Glycine max] gi|356549636|ref|XP_003543198.1| chr0 177074300 177080333 -
3 domain predictions
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Lj1g3v1276960.1
n.a. Carbamoyl-phosphate synthase small chain [Medicago truncatula] gi|357477161|ref|XP_003608866.1| chr1 15241074 15244060 +
3 domain predictions
 –
Lj1g3v1276960.2
n.a. Carbamoyl-phosphate synthase small chain [Medicago truncatula] gi|357477159|ref|XP_003608865.1| chr1 15241191 15244060 +
3 domain predictions
 –
Lj2g3v1106420.1
n.a. PREDICTED: anthranilate synthase component II-like [Cicer arietinum] gi|502164732|ref|XP_004513238.1| chr2 17902662 17906315 +
3 domain predictions
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Lj2g3v1129570.1
n.a. PREDICTED: anthranilate synthase component II-like isoform X1 [Cicer arietinum] gi|502168341|ref|XP_004514366.1| chr2 17997519 18000602 +
3 domain predictions
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Lj2g3v1905570.1
n.a. PREDICTED: probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502138893|ref|XP_004503568.1| chr2 28283429 28283870 -
2 domain predictions
 –
Lj2g3v2475540.1
n.a. Class I glutamine amidotransferase-like superfamily protein [Theobroma cacao] gi|508711166|gb|EOY03063.1| chr2 34766897 34769137 -
3 domain predictions
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Lj3g3v0937760.1
n.a. PREDICTED: CTP synthase-like isoform 1 [Glycine max] gi|356525714|ref|XP_003531468.1| chr3 11228968 11234950 +
3 domain predictions
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Lj3g3v1063640.1
n.a. PREDICTED: protein DJ-1 homolog B-like [Cicer arietinum] gi|502089868|ref|XP_004489045.1| chr3 14318670 14323020 +
3 domain predictions
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Lj3g3v1063650.1
n.a. PREDICTED: protein DJ-1 homolog B-like [Cicer arietinum] gi|502089868|ref|XP_004489045.1| chr3 14318670 14322641 +
3 domain predictions
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Lj4g3v0014330.1
n.a. PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Glycine max] gi|356567431|ref|XP_003551923.1| chr4 199819 204349 +
3 domain predictions
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Lj4g3v0386190.1
n.a. GMP synthase [Medicago truncatula] gi|357492799|ref|XP_003616688.1| chr4 5051508 5054227 -
3 domain predictions
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Lj4g3v0619930.1
n.a. Protein thiJ [Medicago truncatula] gi|357475343|ref|XP_003607957.1| chr4 9365246 9369115 -
3 domain predictions
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Lj4g3v2016180.1
n.a. Class I glutamine amidotransferase-like superfamily protein [Theobroma cacao] gi|508784268|gb|EOY31524.1| chr4 27926397 27928518 -
3 domain predictions
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Lj4g3v2963440.1
n.a. PREDICTED: GMP synthase [glutamine]-hydrolyzing] gi|502139270|ref|XP_004503710.1| chr4 39204105 39207135 -
3 domain predictions
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Lj5g3v1601850.1
n.a. PREDICTED: CTP synthase-like [Cicer arietinum] gi|502117735|ref|XP_004495920.1| chr5 23263598 23270502 +
3 domain predictions
 –
Lj5g3v1601850.2
n.a. PREDICTED: CTP synthase-like [Cicer arietinum] gi|502117735|ref|XP_004495920.1| chr5 23263886 23270502 +
3 domain predictions
 –
Lj5g3v1601850.3
n.a. PREDICTED: CTP synthase-like [Cicer arietinum] gi|502117735|ref|XP_004495920.1| chr5 23263886 23270502 +
3 domain predictions
 –
Lj5g3v1816230.1
n.a. PREDICTED: para-aminobenzoate synthase-like [Glycine max] gi|356533973|ref|XP_003535532.1| chr5 26114777 26125370 +
3 domain predictions
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Lj5g3v1816230.2
n.a. PREDICTED: para-aminobenzoate synthase-like [Cicer arietinum] gi|502118478|ref|XP_004496287.1| chr5 26114777 26125370 +
3 domain predictions
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Lj5g3v1816230.4
n.a. PREDICTED: para-aminobenzoate synthase-like [Glycine max] gi|356574601|ref|XP_003555434.1| chr5 26115011 26125370 +
3 domain predictions
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Lj6g3v0353790.1
n.a. Intracellular protease [Medicago truncatula] gi|357460643|ref|XP_003600603.1| chr6 3364597 3370997 -
3 domain predictions
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Lj6g3v2192310.1
n.a. GMP synthase [Medicago truncatula] gi|357446005|ref|XP_003593280.1| chr6 25318477 25321533 +
3 domain predictions
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LotjaGi1g1v0101600.1
n.a. Phosphoribosylformylglycinamidine synthase subunit PurQ; TAIR: AT3G02720.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|Q9M8R4|DJ1D_ARATH Protein DJ-1 homolog D; TrEMBL-Plants: tr|A0A061EEK5|A0A061EEK5_THECC Class I glutamine amidotransferase-like superfamily protein; Found in the gene: LotjaGi1g1v0101600 LjG1.1_chr1 15475428 15478403 +
3 domain predictions
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LotjaGi1g1v0315900.1
n.a. Carbamoyl-phosphate synthase small chain; TAIR: AT3G27740.1 carbamoyl phosphate synthetase A; Swiss-Prot: sp|Q9LVW7|CARA_ARATH Carbamoyl-phosphate synthase small chain, chloroplastic; TrEMBL-Plants: tr|I3SBA2|I3SBA2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0315900 LjG1.1_chr1 76219015 76227574 +
3 domain predictions
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LotjaGi1g1v0441900.1
n.a. Gamma-glutamyl hydrolase; TAIR: AT1G78680.1 gamma-glutamyl hydrolase 2; Swiss-Prot: sp|O65355|GGH2_ARATH Gamma-glutamyl hydrolase 2; TrEMBL-Plants: tr|I3T794|I3T794_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0441900 LjG1.1_chr1 93872909 93879931 -
3 domain predictions
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LotjaGi1g1v0546400.1
n.a. GMP synthase [glutamine]-hydrolyzing]; TAIR: AT5G38200.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|P49865|NTPR_ENTHA Protein NtpR; TrEMBL-Plants: tr|A0A151TDA1|A0A151TDA1_CAJCA Putative glutamine amidotransferase-like protein RP404 family; Found in the gene: LotjaGi1g1v0546400 LjG1.1_chr1 107614736 107617166 +
3 domain predictions
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LotjaGi2g1v0239200.1
n.a. GMP synthase [glutamine]-hydrolyzing]; TAIR: AT5G38200.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|P49865|NTPR_ENTHA Protein NtpR; TrEMBL-Plants: tr|A0A151TDA1|A0A151TDA1_CAJCA Putative glutamine amidotransferase-like protein RP404 family; Found in the gene: LotjaGi2g1v0239200 LjG1.1_chr2 70038625 70040962 -
3 domain predictions
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LotjaGi2g1v0239200.2
n.a. GMP synthase [glutamine]-hydrolyzing]; TAIR: AT1G66860.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|P49865|NTPR_ENTHA Protein NtpR; TrEMBL-Plants: tr|A0A151TDA1|A0A151TDA1_CAJCA Putative glutamine amidotransferase-like protein RP404 family; Found in the gene: LotjaGi2g1v0239200 LjG1.1_chr2 70038867 70040819 -
3 domain predictions
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LotjaGi2g1v0271300.1
n.a. GMP synthase [glutamine]-hydrolyzing]; TAIR: AT1G25220.1 anthranilate synthase beta subunit 1; Swiss-Prot: sp|Q42565|ASB1_ARATH Anthranilate synthase beta subunit 1, chloroplastic; TrEMBL-Plants: tr|B7FJB9|B7FJB9_MEDTR Anthranilate synthase component II; Found in the gene: LotjaGi2g1v0271300 LjG1.1_chr2 74215149 74219566 -
3 domain predictions
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LotjaGi2g1v0405000.1
n.a. Phosphoribosylformylglycinamidine synthase; TAIR: AT1G74260.1 purine biosynthesis 4; Swiss-Prot: sp|Q9M8D3|PUR4_ARATH Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072U5E4|A0A072U5E4_MEDTR Phosphoribosylformylglycinamidine synthase; Found in the gene: LotjaGi2g1v0405000 LjG1.1_chr2 90181224 90185452 -
3 domain predictions
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LotjaGi3g1v0130200.1
n.a. CTP synthase; TAIR: AT3G12670.1 CTP synthase family protein; Swiss-Prot: sp|P70698|PYRG1_MOUSE CTP synthase 1; TrEMBL-Plants: tr|I1KTT7|I1KTT7_SOYBN CTP synthase; Found in the gene: LotjaGi3g1v0130200 LjG1.1_chr3 16266075 16279130 +
3 domain predictions
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LotjaGi3g1v0130200.2
n.a. CTP synthase; TAIR: AT3G12670.1 CTP synthase family protein; Swiss-Prot: sp|P70698|PYRG1_MOUSE CTP synthase 1; TrEMBL-Plants: tr|I1KTT7|I1KTT7_SOYBN CTP synthase; Found in the gene: LotjaGi3g1v0130200 LjG1.1_chr3 16266882 16272249 +
3 domain predictions
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LotjaGi3g1v0157300.1
n.a. DJ-1 family protein; TAIR: AT1G53280.1 Class I glutamine amidotransferase-like superfamily protein; Swiss-Prot: sp|Q9MAH3|DJ1B_ARATH Protein DJ-1 homolog B; TrEMBL-Plants: tr|A0A072V987|A0A072V987_MEDTR Class I glutamine amidotransferase superfamily protein; Found in the gene: LotjaGi3g1v0157300 LjG1.1_chr3 21491724 21496202 -
3 domain predictions
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LotjaGi3g1v0210000.1
n.a. Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000 LjG1.1_chr3 31266641 31272553 +
3 domain predictions
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LotjaGi3g1v0210000.2
n.a. Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000 LjG1.1_chr3 31266641 31272553 +
3 domain predictions
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LotjaGi3g1v0210000.3
n.a. Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000 LjG1.1_chr3 31266751 31272541 +
3 domain predictions
 –
LotjaGi3g1v0210000.4
n.a. Pyridoxal 5'-phosphate synthase subunit PdxT; TAIR: AT5G60540.1 pyridoxine biosynthesis 2; Swiss-Prot: sp|Q8LAD0|PDX2_ARATH Probable pyridoxal 5'-phosphate synthase subunit PDX2; TrEMBL-Plants: tr|I3SUR2|I3SUR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0210000 LjG1.1_chr3 31266848 31272460 +
3 domain predictions
 –
LotjaGi3g1v0262100.1
n.a. Gamma-glutamyl hydrolase; TAIR: AT1G78680.1 gamma-glutamyl hydrolase 2; Swiss-Prot: sp|O65355|GGH2_ARATH Gamma-glutamyl hydrolase 2; TrEMBL-Plants: tr|I3T794|I3T794_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0262100 LjG1.1_chr3 48188551 48195415 -
3 domain predictions
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LotjaGi3g1v0300500.1
n.a. CTP synthase; TAIR: AT3G12670.1 CTP synthase family protein; Swiss-Prot: sp|Q54V77|PYRG_DICDI CTP synthase; TrEMBL-Plants: tr|A0A072TPJ2|A0A072TPJ2_MEDTR CTP synthase; Found in the gene: LotjaGi3g1v0300500 LjG1.1_chr3 62637715 62645182 -
3 domain predictions
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