Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0215900.1

Overview

Field Value
Gene ID LotjaGi3g1v0215900
Transcript ID LotjaGi3g1v0215900.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description OTU domain-containing protein; TAIR: AT2G38025.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810; TrEMBL-Plants: tr|I3TAS0|I3TAS0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0215900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:32416985..32422754) extracted from Lotus japonicus Gifu genome v1.2.

GTTGTCTTGTCTCGTCGCATAACACAACACGGTCTCCCAACTGTGCCACACACTTATCTCCTTCACCTGAGTAACCCAAG TTGCGCTTTCGCTCGCTCCATTGCAATTCCTCAGCATTCATGGATCACAAGCTTTTCAATGGTATCACCTTCACAACCCT CAACTGATTTCTTTCCTTTTTTCTCTTCGTTTCTGTCACTTTCTCAGCAACCAAACATGGAGCCCGTGCAAAATTATGAA CACTCTTTTTAACTACTATTCGTTTTTTTTTTTTGTGACCCTCAGAGGATATTCTTGAGCAGATGAGAAATGGGTCTGCG AAATTTGAGCTTGTTTCTGATTCCCCGGTTCCTTCTATTGCTGCTCTTCCTAACCGGAACGCAAGCTTCTTTGGAGTTGG AAATTCTAGCTCTCTCTTTTTCGCTAGAGTTGGTTCATTATTGTGAGTTATCTGTTTCCTCTTTCTTCTTTGATTAGTAA ACTTTCAGTCCTTTTCCAGTTTTATTGTTTTTAAATTTGGTTGCTTTATACTCTTTTTCCTAATGGTTGTTAAGATTGTT GTTATGATATTGTTTCTTGGAGTTATTACACAAACAATGAAGTGTGGTTTTCCTATGGTTTACACTAACTCCATGCCATT TTCGCGGTCTTATAATGGAATGGTTGTAAATTGTAACATAAGGAGAAAATTCAAGCGTTTTCCATAAAGGAATCAAATTG AAAATGTGTGTCAAGTAGATGCATAGAGTCTTGTGGATGGGATAAAACCCCGTTGGGAGAGTTAGCCCCATCCCGGCTCG ATTAGGATTGCCTCCGAAGGAGGACACCTGTTTTACACCAAAAAAGTAGATGCCTAGTGAGACAGAGAATATACTTCAAC CTATCTTTTATTTGTTTATTTTTTGTCTTAAAGGAACATGGGTATCTATTTGCGCCGAAGACTTGGCCAGTGGAAATATA TATGTTAAAATTTCATGAATTTATCTTAAAGTGTTGAATGTGCCTTTTAAGGAAGGGAAAGATAGAAGCAGCATGTTTAT AAATTTTGAGGTGCTGTATAAGTCCACTGATATGGTTTCTTTTGCGTTTTCAAAACAATATTTTTGTCAAAAGTGGATCA AATTTGAGCTCTTTTCTTGATTGTTTAGAATTTTGATTTGATGTTTGCTCGCCCCCTTTCTATGTCTTTACAGTAGTGGG CAGTCTCCAGCAATGAAGAAAGTTGAGCGTCTTTCCGTTCACAAGGTTACAGGGGATGGGCGGTGTCTGTTTCGAGCACT GGTACGGTGGTACCATTTTCATTACATTTGTTGTCATCACTTTTGTGGTTTCTTTGCAGTGGAATACACATGCTGATTGG ATTTATCACACAAATTTGTTTGCTTTCATCTTTTACTTAATAAATTAACTCTTGACCTTTGAATATTTTAAGACATGTAT AATGTGTTGTTAAGTGCTACATTGCGACTTACCTTAAAAGTTTCTTACTAAGCTGTCTAGAGTTAAGATTCTGTTTGATC CCTGAAAACGGAAATAAATAGATGTAAGAACCCAGATACGTAGGTAAAAGACATTGTAAATAACGATTTTTATGAATTGA GAAGTATGAACCCAGATAACCCAGATACTACCAATCTGTAATGTAATCCTTTTGTTCGTAACGTTTCTCACTTCTATTCA ATTATTCAATTTTAATTCTGTAACCGCCATACTGCTATTTTTAAGCGGTAACAATTGACCCTGTTAAAGTATATTTTGTA AGTTATTGGGCTCTGTAGCGTTGTGCAGAATGGCATAATTATCCTTGAGACAAGGAAGGTTCTTTGGATGGCACTATTTC TACTATACGTTGGTCTAGTAAAGTTGGATAGTGAATAATCAATAAGTTTGGATAGTTTTTTCAAGATAATAATGCCTTGT TATTTTTAAGGAACAAGCATTTATTTTTCTTTATTTGTACAAGTTGTGATCACACATTCTTTTGGTCCTCATAAATCTGT TATTTTTCTTTATTTGTACAAGTTGTGATCACACATTCTTTTGGTTTGATGAAATTAGGTCAAAGGAATGGCGCACAATA AAGGAGTTGCTCTTAACCAACGGGAGGAGAGAGAAAGTGCAGGTAAACTGATAATGACAGTAGGACATGGATAAATGCAC CTTTTTTGTTCTTTTGCCTTCAATTAGAGAATGTTCATCAAATAACACAAACCTTGCGTATGATAGTTCTTACTGGTTCA GCTATTAAGCTGAGCTACTTAACTTCCTATCTTGTTCTTCCTTTCTTTTTCATGCCCTGTCACTCTTTTTTCCCATTCTT TGTTTTTATCTCTCATTGTTTTACCTTGCCCATGATAGCACAGATGAATTAAGAATGGCTGTGAAAGAAGTCATATGTGA AAATGAAGGAGAACGTAAGTTATATGAAGAAGCTCTCATTGCCATCACGGTTGATGAGCCTCTACCACGGTATGTTTTGG AAACATTCATAGAAAGTGAAGATCTTGAAGTTTATATTAGTTTGTATTTGATGCCATGATTAAATGTGTTACTTTGCAGT TACTGCAAACGAATTGTGCGATCTGATTTCTGGGGAGGAGAGTCAGAGCTACTGGTAAATACTTTCTTTATGCTAACTTC TTAAAGCCTGAAAACCCTTTTATCTTTTAAGGATTAAATACATTTCATAATTTGGAGTTTATATCAGGTTTCATTTAATT TTGCGTAACAGGTCTTCTAAGTTGTCAAACAATTCCAATATTATTTACATGTCTTTCTGTGCCATATGAATATAAAAGTT TGTTAAGATGGAGGACTTTGTATTGTTCTATTCTGTCAGAGCATGATATCAGAGCAGTACAATACTCCATCACCTGTGCT TTCACTATCCCGCTGTCTAAGTTCCTTCAATTCTGGACCTCTGTTTTATTTTTGCTATGTTTTTCTTCTCGTTGATGAGC CATCCCTCTTGTTGTGTTTTTTCTTCATACACTCTCTTTTCAATTCCTTTTATAAGTGGGTTTTCTGACTCTTCTTCCAC CATCCAGCCACTCTTCACCGCGATAGAGCTCGGAGACCAGTAGAAGCAGTTGGTTGAAGACATACTATCGGTTGCAATTT TTGGTGTGCGTCCCCTGTTTATGCATTTTCAGTTTTTACATTACCCGCTTCCGTAGAACAATCTAGGCCTTTGTTGCAGC CGTCATATGTCAGCTCCTGCACTACAACCCTAGGTTGCCTACAATGCAGCCATCGCATACCTGCCTTCATTTTTTTTTCT AAAGCAGAATATTATTGAAATTAAGAATTGAGATACAAAGCCTCTCAATAAAGGCCAAATACAGAACAACGAAAAGACTT TATCCAGAAAAAGAGTCCGCCACAGTATAAAAAAACCAAAACCAAACAGCACAAAATGCTTCCCAAACAAAACACGAAAC AGTGCTAAAGGCTTCCATATTTGATAGGATGAAACCTCGTGAGATGCTCCGCACACCCCTGAACTGCCTCGTGGTCAGTC CCCTTTGCTCCTATATTATACCTGATTGCTGGGGAACCTTTTTAGCACATTTTTTTTTGGGGGGGGCGGGGGGGTTGGTT AAATATATGAAAAATATCATCCCATCATCTCCTATCAATTTCAGTTTCTCTTATCTCTTTTTCCTCTCTTAATAGTTAAT ACCCAACAAAAAATTAAAACCTTATAATTTCAACATTATTCAAATTGTTTCTCCTTCAATGTGATTGTTGGAGCTTTAAG TTTAATGAGGGACTAGAACCTATACAAATTTACATTATCAAGGGGGAATTAGACTCAATCTAGCATTTAAATGATTTAAG TTTAATATCATCACCAACAATGATCAAGCCTTTCCCACTAGGTGGAAGTTGGCTATAAGTATAAAGCAACGCATTATAGT GTGTATACTGTAGTCCTTTTAACTCTAAATCTCTCTAATCAAATTGTCTATAATCTGCATCCACAATTACTTCAGTATTT TTTGTTGTTCTGCAGTTTACTAAAGACATATAATAGGAAATTGAAACTGCCTAATCCAGTCTAGACAATGGGCACAACAG GAAAATTTCAGTAGTAACAGAAGTAAAGTGCACAGACCGCTGACTTAGGGCTCAATCCTCATATTCAGGGTGTAGATTTT TCAGTTCACCCACAGATTACTGAAAGTGATATTCTAATATATTTAGGTGGAGCTTCTGAGTTACACTGCCATTGGGCTGG GACCTTCAAACAAAATTTCATCATCATTTATTTGGATACTTGGTCATACTTTTAATCAGTTTAGGTCACATGTTTCCAGG TGGATACACAAACCCCATGAATAAAAATTCAGATACTGATCAATGTCCATATTCTGGCAGGTACTGTCAAAGTTATGTAA GCAGCCAGTTATTGTGTACATACCAGAGCATGAGGTATGCCTTCAGAAATACTTACTGGCTTGATGTTAATCTATTTTAC TTGTGAAGGAAGAACTTGTAATTTGTGTGCATTCCCCCACTGATTTTTATCATGATGTATGCGCTACAAGGCAGGTTACA TTTTCTAGTCAAATAGTTATAGACTTTTATGTCAACAACTCGGGTAACTTTCAAAATTAAATGTGAAAATGTTATTAAAA GGAAGACATATACAGCATTTTCAAGCAAATTAAGGAGCATTTTGAATATCTTAACGACATATACAGGAGCACCAAATGAA TAATTTTGTTGTATCATTGGGCATTCATAACCTGGCCTTGTCCTTCCATTGCTGCTGATCTGTGGCATTAACTTCTATGA AGATACTTGTATATTCTAACCTTATGATATAATAAGGGCTTCAATTGACGAGGCTTTTACAGGACTAGTCCTTCTATGTT CATTTTGATTTTTGAATGAGAGATTTTAGCCATTCAATTGCTTTTTATTGTGTTTATTATTTTAATGAACTCAGGGAAAT GGCTTTGATAATTAATAAAGATTAACTTAGCCATGTTGTGTATATATTCTTGCACCTAGTTTTTAAAAACCTCTGTCCAA ACTCATATAGGCGTGTATCCTCTGATTTATGTTCAATTTATCTACTAACCTATCCTATTTGTCTCTTTGTAAACTGAAAA TGCAGCATAGAGGCAGTGGTAGGGGATCTGGTTTTATTCCCATTGCAGAGTATGGAAGTGAATTTAGAAAGCGCTCTAGC AGAAAGGTTGTGAGGTTATTGTTCAGCGGTAAGAATCATTATGATCTTCTGATGTGAGGAACTGTCTGAACAGAGGACAA AAATGAGAATGACTTGGACAGTTGCCATTTTGTAATGGTGTTGATTCTCAATGTAATATCTCTGAATTGATTTTGACTTG GAGCATAAAATAGAAAAGCGGTGAATTGTTCTAATTTTCTTATACTTTCCCAGTTGACAACTGCGCTACACTTTGCAATT TGTGTCTAGACTCTAGAGTAATAGTAAATTTTTTGGATTAGTTTCTCTTTCATGAGAATCAATTCTAAAACCCATAAATT ACTATCATAAACTTCTCCCTAGAATTAATTATGGCTTTTGAATCAATTACAAAAGGGTTTCAAACATTCGCAACTCCGCG ATTTAATTACATATTTACATGACAATCTCCACATATGGTAAAGCTTCTTTTATCCTTTCAGATGTTAAGTTACAGCTTAC ACCTATTGTACTTATATTTCCATCCACCTCAGCATTGGCGATTATGTTTCAACACTTTGTCCCTGTTTGAGAAAATAACT TAATTAAGCG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0215900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATCACAAGCTTTTCAATGAGGATATTCTTGAGCAGATGAGAAATGGGTCTGCGAAATTTGAGCTTGTTTCTGATTC CCCGGTTCCTTCTATTGCTGCTCTTCCTAACCGGAACGCAAGCTTCTTTGGAGTTGGAAATTCTAGCTCTCTCTTTTTCG CTAGAGTTGGTTCATTATTTAGTGGGCAGTCTCCAGCAATGAAGAAAGTTGAGCGTCTTTCCGTTCACAAGGTTACAGGG GATGGGCGGTGTCTGTTTCGAGCACTGGTCAAAGGAATGGCGCACAATAAAGGAGTTGCTCTTAACCAACGGGAGGAGAG AGAAAGTGCAGATGAATTAAGAATGGCTGTGAAAGAAGTCATATGTGAAAATGAAGGAGAACGTAAGTTATATGAAGAAG CTCTCATTGCCATCACGGTTGATGAGCCTCTACCACGTTACTGCAAACGAATTGTGCGATCTGATTTCTGGGGAGGAGAG TCAGAGCTACTGGTACTGTCAAAGTTATGTAAGCAGCCAGTTATTGTGTACATACCAGAGCATGAGCATAGAGGCAGTGG TAGGGGATCTGGTTTTATTCCCATTGCAGAGTATGGAAGTGAATTTAGAAAGCGCTCTAGCAGAAAGGTTGTGAGGTTAT TGTTCAGCGGTAAGAATCATTATGATCTTCTGATGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0215900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDHKLFNEDILEQMRNGSAKFELVSDSPVPSIAALPNRNASFFGVGNSSSLFFARVGSLFSGQSPAMKKVERLSVHKVTG DGRCLFRALVKGMAHNKGVALNQREERESADELRMAVKEVICENEGERKLYEEALIAITVDEPLPRYCKRIVRSDFWGGE SELLVLSKLCKQPVIVYIPEHEHRGSGRGSGFIPIAEYGSEFRKRSSRKVVRLLFSGKNHYDLLM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13312:SF3
4 225 222 3.7E-95 –
PANTHER
PTHR13312
4 225 222 3.7E-95
IPR039138
Gene3D
G3DSA:3.90.70.80
61 225 165 7.9E-19 –
SUPERFAMILY
SSF54001
72 224 153 5.79E-12
IPR038765
ProSiteProfiles
PS50802
73 225 153 16.64
IPR003323
Pfam
PF02338
79 221 143 6.8E-12
IPR003323

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004843
Molecular function Thiol-dependent ubiquitin-specific protease activity Catalysis of the thiol-dependent hydrolysis of a peptide bond formed by the C-terminal glycine of ubiquitin and another protein.
Subterm of
GO:0016579
Biological process Protein deubiquitination The removal of one or more ubiquitin groups from a protein.
Subterm of
GO:0030433
Biological process Ubiquitin-dependent ERAD pathway The series of steps necessary to target endoplasmic reticulum (ER)-resident proteins for degradation by the cytoplasmic proteasome. Begins with recognition of the ER-resident protein, includes retrotranslocation (dislocation) of the protein from the ER to the cytosol, protein ubiquitination necessary for correct substrate transfer, transport of the protein to the proteasome, and ends with degradation of the protein by the cytoplasmic proteasome.
Subterm of
GO:0101005
Molecular function Ubiquitinyl hydrolase activity Catalysis of the hydrolysis of ubiquitin from proteins and other molecules.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0215900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…