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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0225800 |
| Transcript ID | LotjaGi3g1v0225800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rhomboid-like protein; TAIR: AT2G29050.1 RHOMBOID-like 1; Swiss-Prot: sp|Q0WQX7|RBL1_ARATH RHOMBOID-like protein 1; TrEMBL-Plants: tr|I1JLP8|I1JLP8_SOYBN Rhomboid-like protein; Found in the gene: LotjaGi3g1v0225800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:34769944..34775762) extracted from Lotus japonicus Gifu genome v1.2.
AATCACTATATAAAAAAGAGATGAAAGGTGAGATGAAAATGAATGAGAAAAAAGTCATGAAAAAAAGGAAGAACTTTACT AAACCAAAACCAAGAGTTTGAAAGAAGAAAATGTAGCAATAAACAAATATAGTCCAAACGGTGCAAGCAAAGCAAAGTTG TTAGCTAAACAAACAACCACTATCCTTTGACTCCATCATCTTTTCCCTCTATAGACCCATTTTCACCACACCATTGTTTC TCTTTCTCTGTATTACTCTACAGTTTCAATTCTCCATGGCTGGGGTGCCACCTCCACTGGGGATGAACTCTAGGAGGAAC AGCAACAACACCATGGTGCACCCAATGGAGGTTGTCACTGACCCATCACCACAAGGTGGGGCTGCAACAATCCCAATTCA ATACTACAGGGAGGAGAAGCATGACAAGAATTGGTGGTCTTGGTTGATCCCGGTTTTTGTTGTTGCTAACATTGTTGTTT TCATCATCACCATGTATGTCAACAATTGCCCCAAGAACTCTGTCTCATGTGTTGCAAGGTTTCTGGGTCGTTTCTCCTTT CAGCCTTTCAAGGAGAATCCCCTCTTGGGTCCTTCTTCATTGACGTGAGTCTTTCACTTTTTACTCCTAATTCTTTTGAT TTCAATTGGATGAGGTTTGGTTTTCATTGTTTGGTAGAGAATGTTCAAATTGTGAATTGGTTGTTGTACAAATTGTGCTT GTTTATTGCTTAGGTTGCAGAAGATGGGGGCTCTTGATGTGAATAGAGTGGTCCACAGACACCAGGGTTGGCGCCTCATC TCTTGTATGTGGCTACATGCTGGGGTTGTCCATCTATTGTCAAATATGCTGGGTATTCTATTCATTGGAATTCGGCTAGA GCAAGAATTTGGGTTTGGTATGTGTCACATGTTCAAAATTAAGACTAGTACATTTTCTATGTATCTTGCAATTATCAGGT TCTCTAGGAGTTTAGCCTAAGAACTACTTGTCTACTTGAGTCGGCTCTTTAAATTTGAGGTTTGGTTTTTGTCCCTTGAT TTTCAAAAGTGAGCACTTTTGGTTCCTGCTATCATCTTAGATCAAGTGAATGTTGGCATGTTGAATGGATTCCTAACTCA CCATAGACTGGCAATGACAGGGGCTGAAAGTAAGTGCTTACTTTTAAAAAGTAAGGAACATTGTCCAAAACGCAGAATTA AAACGGACTTAAACCAAAATTTGGTTATTATAGGAACCAAACACTTTTGATTCCTGCCATAATCATATATTAATTAGCGA TTGACCTGTTGAATGGAAGCCTAGTCCTAGTTCAGCGTTGAGTGGCATGCCATAATGACAAGTACCAAAAGGGCTTACCA TTAGTAGTGTGTTCGGTTATGCGGTTGGGAACCTCATAAATAATTATGGGGAGAAGCTACAAAGTATATTTTCTGGGATG ACTGTGTTTTAGATTGTGTTTCCACCACAAAGCCAAACACACTACAATAAGTAAGGAACACAAACCAAAACCCAAGTTAA GAGGTATTTAAACCAAAATTTGGTAGATACAGAGGAACCAAAATCTTATTTAAACTTTGTTATAAATAACATGTACTAGT GACAAGTAATAGTTTTTGGAATTTTGCTAATTGTTCTTCTGTTTGTATCACTCAAAATTTTGAAATTTTAATATGGTTGT GAGTAGAAAGTAAATAGGTAAAATTAACAAGACAGTACGAAATTAGTCTTTTGTTCTGGAAAATTGTCAACTAGCACAAT TTAAGGATAGCCTATAAGTCTTATAGTAATTGATAGCTGGTGAAAAATTAACACATGGTAGAGTATTTGAAATTAGCACA ACTTTTAACTTCAAATAAATTGATTTGACGAGTAATACAAGTTGCAATGTTTAGTATATGGTAAATAGATCAAAATGACA CTGAGGATGATTTCTTTTAGTTTCTCTTCTAAGAGGCACGGTGAGCTTATGTATTGCTTTCCTGGTTTTAGCTTTCAGTT TTTTACTAATTTTTGTGTAGCTGTACAACAGTGCTTATTGGATTGCTATTTGTCATATCTGGATTTGGGGGGAGTTTGCT TTCTGCTCTTTTTATTCAGTCAAACATTTCTGTCGGTGCTTCTGGTGCACTTTTTGGCTTGCTCGGAGGCATGCTTTCGG AACTCATCACTAACTGGTCTATGTATGACAATAAGGTGCATATTACATTTTTCTATTTTGAAGTTTGTATCTCAAAAGGA AAGATTATGAAATTAAAAGCATACTACTGACAATTACGATTTTCCTTTCATGTGTAGTTTCCAGCACTTTTCACCCTAGT GCTCATCATTGTTGTCAATCTCGCATTGGGGATTCTCCCACACGTGGACAATTTTGCTCATATAGGAGGCTTTCTTTCAG GATTTCTTCTTGGATTTGTGTTTCTGATACGTCCTCAGTTACAATTGGTAAACCAACGATACGCTCCCCTACAATATTCT CCGGGACGACCTAAGCGTAAATTCAAGACATATCAGTGCATATTATGGGTCCTCTCTCTGATCATTCTAATTGTTGGGTA AGCATCTAAAGCATCACTTTACCTGAGATCAAGTTGCTTTAGCTAAAAAATAAGTTAGGGGAGACTTTAGCATAATTAAC CCTGTGGACATAAAGCAAGAAACCTGGACTTTTCCAAAGTAGTTGGGATAGATGCAGTTTTGGTTGAACTCTAGTAGTTA GAGGTTTTAGATTCATTTTCTACTAGACTAAAGAAATTTACATATACCGTGATAAACTAAATTTGTTGCTTTAGGCAGAA TCTAAAAGCATAACAAACCCATCATAATCTTGTCTTACATTTATTAGATTTTAAAATTCGGTTTCATGATCTTAATTATT ATCAGATTTGCAATTATTTTTTAAATAATTGTTTTTGCCTTTTTGGGACTATCACTAGATAAAGATTCATATGCTTAATA GGAGAGATGACGTGGTAAAACAAGATGAGTGGTATGAAAAGAAACATTCTTTAAGAAGATGATAAGTTATATGAAGTTTT GAAAGACTTACAGCTATTTCTACTTGAGTACCAGCCAGCTGGAGAGAAGACAAACTTGTATTTTCAAGTGTCATTAATGA AATGAATTATTTTGAAATTTCAACTTATTGCTAGAAATATTACATCTTAAATTTCGGGCGACAAAACTCGGTAAGAGTTC TGCAAAACAGATCCTAGCGGATAACCAGTGTTGTTAAGATCCCGATCTGGATCCCAAGATCTTACGATTTTAGGATCCGA GAAAGCCCCAACGATCTGGATCTATTGCAGGATTGGAGAATGGATTGTATCTCACCGGGATCCCAATCCGCGAAGCAAGG ATCCCTCGGATCCCGTCTTGTGATCCCTGAAGAGAGGGAGTTTCACACTTAGGCTTTCTATTTTTGGTCCATTTCAACGT CCCATTTCAGAATTTCAAAAAAAAGAAGTCCAATTTCAGCCAAAACTCATAAAGTGATGATAAGGTTTTTTAATAAAAAT GAATAAAAGTGATAATCCCTAAACGACAACCTCCAACTTTCCCTAGGTCTCGTACCATTGAACCAATACAGTGAACTTGC ACCTTGGATTATGATTCTTCTGTTATGAATTAATTATGTCATTGTGTGTGATTTTTTATGTGAATCATGAGTTATTTTTC TTATGTATGTAAATTTTTATGTATATGTAATTTATGAAGTATATATTTGCATTCTTATTAGGATCTTAAAGGATCTACGA TCCGATCCCGATCATAAGGTTTACGATCTTTTACGCCCTGACCAATCTTAAGAAGGATCCCGATCCTGACAACATTGCGG GTAACATAAGTGGATTGAGTGTTCTTACAAATATTAGTATATTACATCTTAGGGAAGTGTTTTACAAGCCCTGATGGTAT ATTAGAATGCTACCTACAAATATCAACATTTTTAGGGCTGTAATAGGTAAGAATGGCTGATGTTGCTGCCTTGATAAGCA GAAGTAATATCGAAGAGGAAAGTTTCTACATGTCACTGAATATAATGAGTGAAATGTCTGCCTGAAATAATAAGGAATAA AGAAGCTTGACCTAGTTCTAGAAGTTACTGGCAGATTATAGAAGATATATGTCGGATGTGTAAGTCGAATTCTACAAATT GGAAGCATGCTTTTTTAGTTCATTGCAAGAGAAACAAGATTTGTTAGCTGCTCATATAATTCTAAATATGTGAGGATTTC TCAACTGAAGTTGTGAAATTATGAATGTAATATGATAGTGGATACTGTTTAGTGTTGGTTATCAAGTAGACCAGGAAACA ATTCTCCCTTTATTAATGTAATTAACCAATTACGTGTATGTATGTTATATGAAAATTGATTCTTGCTTTGCAACTTCTGC CTGGTCCATCATCTTTTTTGTGTTCATTCTTTTCTTTCATTCATCCTTTCATTTTGAACAATTGTTCTGTCCATGTTAAT TTGTCTAATGTGACAGGCTTTCTGTTGGGCTGGTTGCACTTCTCCGCGGTGTTGATGCTAATGATCACTGCTCCTGGTGC CATTATATGTCTTGTGTTCCAACTTCAAGATGGAGCTGTCGTACAGAGGCAGCATATTGTTTGGTAAGCATTTTACCTGA AAGTCTCTTCTTCTGAATACTATCATCAAATCCCATGAAATTACTTAATTTTCGCTCACAATTTTATGACTAGGTTAAAC ATCTGGAATCCCTATTTCATGAATATTATAATTATACTGTCTTGTTTGAAGAATATCCCGGATTTAACATTTATGTTTTG AATACAGATTTCTCTTGAGAGTTTATGGCAAAGTTCAAAATCTCTTATAATAAACTATAAACAATTTGTTGATCTCCAAA ACAGTAACTTATAGGTGTTGCCCTCCCTTAGACCACCCGTAAATGGGCCACCTGCAGATGTTCAATCCTGCAAAATTCAC GCTTTGATGTCCACCTTGGGCATGAGGCGCTAAGGTCACACATTGATGTGGGCATGCTAGGGTCCCACATTTACTAGAGA TATAGTTAAATGAGTCCTTATAAAGGGTAGAGAAATCCTCACCCCTGAGCTAGATTTTTGGGTAGAGTTAGGCATAGTCT GAATTCTAAGACTATCAACTATCCCAATGTTTTCATTACACATTGCTTTGTGATGTTCAAAGATGCTTCGTACTGAGTAA GTTTAACCATTAAAAGATGTCTTTCTTAGTTCTCACTGCCTCAAATTGATGTTTTTCTGATGATTGTGTTTCTCACTTTT GCTTTGGTTTGGATATTCATTTTGTTGAAATACCAAAAATGCAGTCAGACCAGCTTGGCAATCAGCTGAACGTAACATGC TCAAGCAATGGTAAATCCAGTATATACTACATGCAAGATCCAACTAGTTCCCAGATCCAGCAATTGTGTACTCAGCTTTG TAGTTGAGTTTTGACAAAAAGAGATTATCTATGGAATGAGATGATTATTTGTTGATAGTGTCTAGGCTCTCGTGAAATAC TACAGTGCTCTTTAGTTTATACCTTTTGTCTTATTCAGGAAATAAGATAAAAAAGCAAAACATACTTTACCCTTACGATA TTGTTTATTATCCCCTCGTGTATATAATACTGATTGATATGCATTTTTTTGGAACCTATTGTGTGCTCAGATGAAAGTTA CACTTGCAGATGCTTTGTATTATAAAAGGAAGTTGTTACTTCAATAAAAATAGTGTTTCATGTTATTTTTCCATTTTCAT ACTTTCTACGGTAAACCAAACAACCTTTTAGTATATGTTTGGTTGAGTATTTAACGCAA
CDS sequence (LotjaGi3g1v0225800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGGGTGCCACCTCCACTGGGGATGAACTCTAGGAGGAACAGCAACAACACCATGGTGCACCCAATGGAGGTTGT CACTGACCCATCACCACAAGGTGGGGCTGCAACAATCCCAATTCAATACTACAGGGAGGAGAAGCATGACAAGAATTGGT GGTCTTGGTTGATCCCGGTTTTTGTTGTTGCTAACATTGTTGTTTTCATCATCACCATGTATGTCAACAATTGCCCCAAG AACTCTGTCTCATGTGTTGCAAGGTTTCTGGGTCGTTTCTCCTTTCAGCCTTTCAAGGAGAATCCCCTCTTGGGTCCTTC TTCATTGACGTTGCAGAAGATGGGGGCTCTTGATGTGAATAGAGTGGTCCACAGACACCAGGGTTGGCGCCTCATCTCTT GTATGTGGCTACATGCTGGGGTTGTCCATCTATTGTCAAATATGCTGGGTATTCTATTCATTGGAATTCGGCTAGAGCAA GAATTTGGGTTTGTGCTTATTGGATTGCTATTTGTCATATCTGGATTTGGGGGGAGTTTGCTTTCTGCTCTTTTTATTCA GTCAAACATTTCTGTCGGTGCTTCTGGTGCACTTTTTGGCTTGCTCGGAGGCATGCTTTCGGAACTCATCACTAACTGGT CTATGTATGACAATAAGTTTCCAGCACTTTTCACCCTAGTGCTCATCATTGTTGTCAATCTCGCATTGGGGATTCTCCCA CACGTGGACAATTTTGCTCATATAGGAGGCTTTCTTTCAGGATTTCTTCTTGGATTTGTGTTTCTGATACGTCCTCAGTT ACAATTGGTAAACCAACGATACGCTCCCCTACAATATTCTCCGGGACGACCTAAGCGTAAATTCAAGACATATCAGTGCA TATTATGGGTCCTCTCTCTGATCATTCTAATTGTTGGGCTTTCTGTTGGGCTGGTTGCACTTCTCCGCGGTGTTGATGCT AATGATCACTGCTCCTGGTGCCATTATATGTCTTGTGTTCCAACTTCAAGATGGAGCTGTCGTACAGAGGCAGCATATTG TTTGTCAGACCAGCTTGGCAATCAGCTGAACGTAACATGCTCAAGCAATGGTAAATCCAGTATATACTACATGCAAGATC CAACTAGTTCCCAGATCCAGCAATTGTGTACTCAGCTTTGTAGTTGA
Protein sequence (LotjaGi3g1v0225800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGVPPPLGMNSRRNSNNTMVHPMEVVTDPSPQGGAATIPIQYYREEKHDKNWWSWLIPVFVVANIVVFIITMYVNNCPK NSVSCVARFLGRFSFQPFKENPLLGPSSLTLQKMGALDVNRVVHRHQGWRLISCMWLHAGVVHLLSNMLGILFIGIRLEQ EFGFVLIGLLFVISGFGGSLLSALFIQSNISVGASGALFGLLGGMLSELITNWSMYDNKFPALFTLVLIIVVNLALGILP HVDNFAHIGGFLSGFLLGFVFLIRPQLQLVNQRYAPLQYSPGRPKRKFKTYQCILWVLSLIILIVGLSVGLVALLRGVDA NDHCSWCHYMSCVPTSRWSCRTEAAYCLSDQLGNQLNVTCSSNGKSSIYYMQDPTSSQIQQLCTQLCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 52 | 52 | - | – | |
| PANTHER | 11 | 374 | 364 | 3.1E-194 | ||
| PANTHER | 11 | 374 | 364 | 3.1E-194 | – | |
| SUPERFAMILY | 52 | 266 | 215 | 3.27E-41 | – | |
| Phobius | 53 | 74 | 22 | - | – | |
| TMHMM | 53 | 75 | 23 | - | – | |
| Phobius | 75 | 134 | 60 | - | – | |
| Gene3D | 98 | 271 | 174 | 1.5E-32 | ||
| Pfam | 123 | 264 | 142 | 9.5E-38 | ||
| TMHMM | 135 | 157 | 23 | - | – | |
| Phobius | 135 | 156 | 22 | - | – | |
| Phobius | 157 | 162 | 6 | - | – | |
| Phobius | 163 | 186 | 24 | - | – | |
| TMHMM | 164 | 186 | 23 | - | – | |
| Phobius | 187 | 191 | 5 | - | – | |
| TMHMM | 191 | 213 | 23 | - | – | |
| Phobius | 192 | 210 | 19 | - | – | |
| Phobius | 211 | 221 | 11 | - | – | |
| TMHMM | 220 | 242 | 23 | - | – | |
| Phobius | 222 | 239 | 18 | - | – | |
| Phobius | 240 | 244 | 5 | - | – | |
| Phobius | 245 | 263 | 19 | - | – | |
| TMHMM | 246 | 263 | 18 | - | – | |
| Phobius | 264 | 292 | 29 | - | – | |
| TMHMM | 293 | 315 | 23 | - | – | |
| Phobius | 293 | 315 | 23 | - | – | |
| Phobius | 316 | 388 | 73 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0225800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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