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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0239200 |
| Transcript ID | LotjaGi3g1v0239200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|V7C741|V7C741_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0239200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:38643946..38647071) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCATCCCCTCCCTCCACACACTCATCTACATGAATATTATTGATATTATTGATGCTTAGCTTTTTTAATGGTATTTA ATCTTAATCTCCCTAGTCCCCTAGAGATGAATTCCTGCCTCCGCCCCCTGGACACAGAGGTGGCTGAGAGAAAAGGTTGC AAAGCTGCAGGGGGACAGAGGTGGCAGAGGTTCTTTATAGTGTTTATAGATAGATTAATTTTTTTTGAATGGATACAGGT TTCATTTGAAAAAGTGCCGATGCCTAAAGCATACAACCATAATAGTGGGCTAAGGCCCAGGACACAACTGATAGATTTCT CATTGATGCAACCCCAAAACCATAATCTCAAAAGATGCCACTGACGGCTAGAAATCCCAGACTCAATGAAGCTCCTCCTT GTTTCATTCACCGCCACCCTCAAAACCTTTCGCCACATGGTCCGATACGGCGTGTCGCCGCCGAAGGTCAACGGTTACAA CAACGTCATGATCCGCGGCTTCTCCGCCGCTGGGAACTTAAAATCAGGAGGGAAGACGGTGGCGGAAGTGTTTGGGTTGT TGGAAGCAACGACTGAGAAGGGTTTGGTCCCTGATGCGATGGCTTTTACGTCTGAGATTGGTTTGATGTTCCATTGGTTA AAGCCAGACAAGGCTTCTAAGGTTTACTGTCAAATGATTGATAGTGGGGTTACGCCCACCGTTGATACATACAAAACGCT TGTAGATGGATATTGCTCTTACAATATGGCTGATGAGGCTTTGGTGATTTTGAGGGACATGGCTGAGAGGGGTTTCTCCC TTCATGCTAGTTTGGGATCTGTTATATCCGCGCTTTGCCGTGTGGAGCAGCTGGATAAGGCGTTTGAATTGAAGATGGAG ATGTTTGAGAAGAAGGGCATCTTGCCTGATAATAACGGGTATTCGGCGCTTATATTGGGACTGTACCAGCAGGGAAGACT GTCGGAAGCTTTGGATCTCTTCCGAGAGATGGTGCGCAGCGGTGTGTTGCCAGATGAGTATACTTATTCTCTCTTGATGG ATACTTGTCGTCTTACAGGTGAATTCAGTAAGGCTTTTCATTTGCATGATGAAATGATACAGAAGAGTTTGACTGATTTT GTTACTGGTTTTTCACCGTTTGTTGTTACCTACAACGCGCTTATTCATGGGTATTGCTTTTTGGGGAGGTTTGTGGAGGC TATGGGGATTTTGAGGGGCATGGCTGAGATGGGTTTGCCCCCTGATGCTGTTAGTTATAGCACTGTTATATCCTGGTTTC ACCGAAACCGGGAGCTGGGGAAGGCGTATGAATTGAAGGTGGAGATGGATGAGAAGGATATTTGGTGGTTGGATGAAAAC ACGCGTGAATCACTTATGAAAGACCTGTCGGATGTGGATACTTATACTAGTGTGATGAATGATTATTTTGCTGAAGGTAA GTTGGAAATGGTTTATAAATTGCATAATGAGTTGAGTGAATCTGATTTTTTGTCATATTCTGTTAAGTATAGTGTGTTAA TTAATGGACTTCATAAGAAAGCCACGACAAGAGATGCTAAGAAGCTTCTTCTGGAGACAATTGATCTTGCGTGTTTGATT ATCCCAACTTATATAGTACATGATATTCTGATAGAGAACTGCAGTAATAATGATTTTAGGAGTGTGGTAGGGCTTATCAA AGGTTTCCTCACGAGGGATTTAGTGTATGAAGCAGCCAGAGCTCATGACACAATGCTTGAGGGGAATTATAAGCTAGAGG GGGCAGTTTATAATGTATTAATATATGATCATTGTAGATCTGGTAATGTTTGTAAGGCGTATGATATGTACAAGGAGATG GTGCATTATGGTTTTGCTTCTCATATGTTCTCTGTACTTGCTCTTATTAAGGCTCTATATTATGATGGAAGTTACCATGA GATGAGTTGGGTGATTCAAAATACTTTGAGGAGCTGTAATCTCAATGATTCTGAGCTAATTGAAGTACTTAATGAAATTG ACGTGAGGAAACGTGAAATTGATGCTCTTTTGGATGTACTAGCTGAAGTAGCCATAGATGGCCTGTTACTTGATGGTGTA AAAGTGCATGATCGCTTCACTCTCTCTACAATTATTGTCTTCTTGATTTTAATCCTAAGAGGTATTCTTTTCTTTTCAAG ATGAGATTTGGTGTTAGGGTTTCTGTATTTTGGATTGGGAATTTACTTTAAATTACATGTTTGATTTGTGTTTTTTTTCC CTGTCTAAAGAATGTTAGTTGCTTCATTTTCATTTTTGAAACACATATTTTGCTCTTTTAACTTGCTGCCATAATGCTTA TCCATCGTCATTGAAAACAGGTCTCCAAGAGATCTTTCGTTTTTGAAGTAGTTTCTTCTGCTATGAGGTATTCTGCTGTT TGGACTTTGGATGTGACAATTTCAGACCTATTGTAATTGATTTTGTTCATATGTTTAAGACCTATTGTTATTTGTTCTTA AGACCTATTGTTATTGGTTTTGTTGCTACAACATTAGAGCTATGATGTTAAAGCTTAGTTTTATTGTTTCAAATAGGTGT AACTGTGTAAGTTTATTTTTGGAAATGCAGTGGTATGCATGTTGTATGTTTTGTTATTGGAAGTTGAATGCAATGATATG TAGAAAGGTCTATTACCCCGTGGCCTATTGGTCTCTTTAAGAGGCTATTTTTTGTTAAATAGGCTTGTGTACATTCTTGT AGGTTAGGCCAGACCATCAAGGCCAGGTCATACCTTAAAGTTTGGCATACGACAGGCCACAAGCCACAGAATTAGAAAGC AGGCTAAGATTGGGCTGCCCAAATCCTTGCTTGGCTTGACCTATTTTTCCCTAATGTTTGGTAGATCACTAGATCTGTCC AGCTAACTTACCGTGGTCTGATTCTTTACTTTGTTCATCAACTTCTCAGACTTATTTTTTCTTTTAATGTGATTCAATGT TTTTTTAAGTACAACTTAAAAATGCCCCCTTTGATGTAAATGACAGTTATGCCCCTCCTTTATAGACCAATGGAAAGATA CTTACTAGGATGTTATTTTGATAAGATGTGTAAGTTTATGTTTTTGGAATTTTTGGCCCTAAATTTTTATGTTTTGCATT TTATTG
CDS sequence (LotjaGi3g1v0239200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCCTCCTTGTTTCATTCACCGCCACCCTCAAAACCTTTCGCCACATGGTCCGATACGGCGTGTCGCCGCCGAA GGTCAACGGTTACAACAACGTCATGATCCGCGGCTTCTCCGCCGCTGGGAACTTAAAATCAGGAGGGAAGACGGTGGCGG AAGTGTTTGGGTTGTTGGAAGCAACGACTGAGAAGGGTTTGGTCCCTGATGCGATGGCTTTTACGTCTGAGATTGGTTTG ATGTTCCATTGGTTAAAGCCAGACAAGGCTTCTAAGGTTTACTGTCAAATGATTGATAGTGGGGTTACGCCCACCGTTGA TACATACAAAACGCTTGTAGATGGATATTGCTCTTACAATATGGCTGATGAGGCTTTGGTGATTTTGAGGGACATGGCTG AGAGGGGTTTCTCCCTTCATGCTAGTTTGGGATCTGTTATATCCGCGCTTTGCCGTGTGGAGCAGCTGGATAAGGCGTTT GAATTGAAGATGGAGATGTTTGAGAAGAAGGGCATCTTGCCTGATAATAACGGGTATTCGGCGCTTATATTGGGACTGTA CCAGCAGGGAAGACTGTCGGAAGCTTTGGATCTCTTCCGAGAGATGGTGCGCAGCGGTGTGTTGCCAGATGAGTATACTT ATTCTCTCTTGATGGATACTTGTCGTCTTACAGGTGAATTCAGTAAGGCTTTTCATTTGCATGATGAAATGATACAGAAG AGTTTGACTGATTTTGTTACTGGTTTTTCACCGTTTGTTGTTACCTACAACGCGCTTATTCATGGGTATTGCTTTTTGGG GAGGTTTGTGGAGGCTATGGGGATTTTGAGGGGCATGGCTGAGATGGGTTTGCCCCCTGATGCTGTTAGTTATAGCACTG TTATATCCTGGTTTCACCGAAACCGGGAGCTGGGGAAGGCGTATGAATTGAAGGTGGAGATGGATGAGAAGGATATTTGG TGGTTGGATGAAAACACGCGTGAATCACTTATGAAAGACCTGTCGGATGTGGATACTTATACTAGTGTGATGAATGATTA TTTTGCTGAAGGTAAGTTGGAAATGGTTTATAAATTGCATAATGAGTTGAGTGAATCTGATTTTTTGTCATATTCTGTTA AGTATAGTGTGTTAATTAATGGACTTCATAAGAAAGCCACGACAAGAGATGCTAAGAAGCTTCTTCTGGAGACAATTGAT CTTGCGTGTTTGATTATCCCAACTTATATAGTACATGATATTCTGATAGAGAACTGCAGTAATAATGATTTTAGGAGTGT GGTAGGGCTTATCAAAGGTTTCCTCACGAGGGATTTAGTGTATGAAGCAGCCAGAGCTCATGACACAATGCTTGAGGGGA ATTATAAGCTAGAGGGGGCAGTTTATAATGTATTAATATATGATCATTGTAGATCTGGTAATGTTTGTAAGGCGTATGAT ATGTACAAGGAGATGGTGCATTATGGTTTTGCTTCTCATATGTTCTCTGTACTTGCTCTTATTAAGGCTCTATATTATGA TGGAAGTTACCATGAGATGAGTTGGGTGATTCAAAATACTTTGAGGAGCTGTAATCTCAATGATTCTGAGCTAATTGAAG TACTTAATGAAATTGACGTGAGGAAACGTGAAATTGATGCTCTTTTGGATGTACTAGCTGAAGTAGCCATAGATGGCCTG TTACTTGATGGTGTAAAAGTGCATGATCGCTTCACTCTCTCTACAATTATTGTCTTCTTGATTTTAATCCTAAGAGGTCT CCAAGAGATCTTTCGTTTTTGA
Protein sequence (LotjaGi3g1v0239200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLLLVSFTATLKTFRHMVRYGVSPPKVNGYNNVMIRGFSAAGNLKSGGKTVAEVFGLLEATTEKGLVPDAMAFTSEIGL MFHWLKPDKASKVYCQMIDSGVTPTVDTYKTLVDGYCSYNMADEALVILRDMAERGFSLHASLGSVISALCRVEQLDKAF ELKMEMFEKKGILPDNNGYSALILGLYQQGRLSEALDLFREMVRSGVLPDEYTYSLLMDTCRLTGEFSKAFHLHDEMIQK SLTDFVTGFSPFVVTYNALIHGYCFLGRFVEAMGILRGMAEMGLPPDAVSYSTVISWFHRNRELGKAYELKVEMDEKDIW WLDENTRESLMKDLSDVDTYTSVMNDYFAEGKLEMVYKLHNELSESDFLSYSVKYSVLINGLHKKATTRDAKKLLLETID LACLIIPTYIVHDILIENCSNNDFRSVVGLIKGFLTRDLVYEAARAHDTMLEGNYKLEGAVYNVLIYDHCRSGNVCKAYD MYKEMVHYGFASHMFSVLALIKALYYDGSYHEMSWVIQNTLRSCNLNDSELIEVLNEIDVRKREIDALLDVLAEVAIDGL LLDGVKVHDRFTLSTIIVFLILILRGLQEIFRF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 3 | 12 | 10 | - | – | |
| Gene3D | 7 | 141 | 135 | 1.4E-19 | ||
| PANTHER | 12 | 138 | 127 | 6.2E-64 | – | |
| Phobius | 13 | 16 | 4 | - | – | |
| Phobius | 17 | 570 | 554 | - | – | |
| Pfam | 69 | 118 | 50 | 1.5E-7 | ||
| ProSiteProfiles | 70 | 104 | 35 | 7.728 | ||
| ProSiteProfiles | 105 | 139 | 35 | 10.72 | ||
| TIGRFAM | 108 | 138 | 31 | 1.1E-5 | ||
| ProSiteProfiles | 142 | 174 | 33 | 6.818 | ||
| PANTHER | 142 | 334 | 193 | 6.2E-64 | – | |
| Gene3D | 142 | 242 | 101 | 5.2E-24 | ||
| TIGRFAM | 144 | 175 | 32 | 2.5E-4 | ||
| Pfam | 144 | 169 | 26 | 0.018 | ||
| Pfam | 174 | 221 | 48 | 9.5E-14 | ||
| ProSiteProfiles | 175 | 209 | 35 | 12.003 | ||
| TIGRFAM | 179 | 211 | 33 | 3.6E-7 | ||
| ProSiteProfiles | 210 | 244 | 35 | 9.427 | ||
| TIGRFAM | 212 | 241 | 30 | 0.0019 | ||
| Gene3D | 243 | 320 | 78 | 2.0E-15 | ||
| ProSiteProfiles | 252 | 286 | 35 | 11.794 | ||
| Pfam | 253 | 298 | 46 | 9.2E-12 | ||
| TIGRFAM | 254 | 288 | 35 | 3.2E-7 | ||
| ProSiteProfiles | 287 | 321 | 35 | 7.695 | ||
| Gene3D | 321 | 400 | 80 | 1.5E-6 | ||
| ProSiteProfiles | 336 | 370 | 35 | 8.857 | ||
| PANTHER | 336 | 519 | 184 | 6.2E-64 | – | |
| Pfam | 339 | 367 | 29 | 0.041 | ||
| ProSiteProfiles | 371 | 405 | 35 | 5.514 | ||
| Gene3D | 405 | 547 | 143 | 9.8E-10 | ||
| ProSiteProfiles | 423 | 457 | 35 | 5.7 | ||
| ProSiteProfiles | 458 | 492 | 35 | 9.482 | ||
| Pfam | 461 | 490 | 30 | 0.0035 | ||
| TIGRFAM | 461 | 490 | 30 | 0.0017 | ||
| Phobius | 571 | 587 | 17 | - | – | |
| Phobius | 588 | 593 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0239200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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