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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0241900 |
| Transcript ID | LotjaGi3g1v0241900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein dnaJ; TAIR: AT2G20560.1 DNAJ heat shock family protein; Swiss-Prot: sp|Q9UDY4|DNJB4_HUMAN DnaJ homolog subfamily B member 4; TrEMBL-Plants: tr|B7FHS3|B7FHS3_MEDTR DnaJ heat shock family protein; Found in the gene: LotjaGi3g1v0241900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:39294511..39297443) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTGTGGACTATTACAAAATCTTGCAGGTTGATAAGATTGCTACAGATGATGACTTGAAGAAGGCTTATAGAAAACT CGCCATGAAATGGCACCCTGATAAGAATCCAAGCAACAAAAAAGAAGCTGAAGCTAAGTTTAAGCAAATTTCAGAAGCCT ACGAGGTATGTTTTTTTTCTCAAGGGTATTGCAATTTTTCTTTTTGTTCTGAAATTATGAGTGGGGAAAAAATGAAACCA CATGAAATTTTTTTATCTGGGTGATGCTTATGTTTTTCTGTTTTCTTCAAATTCTATTTTCAATATGGGTACTGCAAAGT TTTTAGCTTTCTCAGAAGTTGGGAGTAGAAAAGTGAAATTCAATCATATGGGTACTGCAAAGTTTTTAGCTTTCTCAGAT GTTGGGAGTAGAATAGTGAAAATTCAATCAAAAAATTCATCTGGGTGATGCTTAAGTTTGTGATTCTAATGTTTCTTCAC AAGGTTATTGCAAATTTGTTAGCTTTATGTGAAATTAGGAGTGGAACAATGAAATCCAATAATAAATTTTAGCTGGGTGA TGCTTACTTTGTTTCTGTCTTGATTAGGTGCTAAGTGATCCTGACAAGAGAGCTATCTATGATCAATATGGAGAAGAGGG TTTGAAGGGTCAGGTTCCCCCTCCTGATCCTGGTGGTGGTGGTGGTGGTTGTGGTGGCAGCACTACTTTCTATTCCACAG GAGATTTCCCAGGATCGTTTCGATTCAATCCAAGGAATGCTGATGACATTTTTGCAGAGTTTTTTGGGTTCTCAAGCCCC TTTGGTGGCATGGATGGGAGAGGTTGTGGTAGTGGCATGAGATCCAGGTTCTCTGGTGGTATGTTTGATGATAATATGTT TGGATCTTTTGGGGAAGGTGGAAGAGTAAATGTGAATCAAGGTGCAACGCGCAAAGCTCCTCCCATTGAGAATAAGCTTC CCTGTACACTTGAGGAGATATATAGAGGGACAACAAAAAAGATGAAGATCTCTAGAGAGATTGCAGATGCCAGTGGGTGA GTAGTTGTTATTACCTGGCTATTTCTTCAGCTATTTGAGGATATTTTAGCTTTTTGGTCCCCACCTCAGTTTGTTATTAT GGTTGGTTTTGGTGCATGATTGAAATTATTGAATTTCAATTTGGTAGCAAGTAAAAACAAATATGGATCCACTACCCCAG TATGTCATTGGCACCCTTTCCGGTAGGTCTTGAGGTGCCTCTCCGAGCCCTACCGTTTTTTAACCAAAAAACAAACAAGA CAAATATGGATCCACTGAAGGAAAAACTAATATGACCATAAAATATGAAATTCTCCCCACAAGGATTTGCTAGTTTCATG TGGTTGTGTTGAGTGCTTGGCTTGAAAAATCAAATTCGAGAAAGTACTTGCTAATTGGCTGTCCATTGTAGGTGGCCATT TGGCTGTTGAGTTTCCTTTCTATGTCTGTACATCTATTTCGTTGATCAAGCCTTTGTCAATAGATGTTTTTGTTTACATA ATAGTCAATGCATAGACTGTCATTTTGTTTCTTTGTTCCTTTTGCCTATTTGTTTGAAGAAGTATGCATGGTAGTTTCTA GTGACTGTTTAAACAGTTAGGTGAACATTAGATGCTTTCTACTTCGAAGTTTCTTCCCTGTAAAGTCTGTATTCCCTCTA CATATATCTGTGCTTAAGACATGCTGTAATTGCTTACTGATGACATGATTTTTTCTCTCAAAGTTACATGTTTGGTACAA ATTTTAGGAAGTGCGGTAGGGGAATGGAGGGAACCAAAACCCCTCATAATCAATTTTATCTCACCTCCAAAAGTGCTCCG GATTTGGAGGGAAAATAGTTTGTATGTCAAAAAAACATTTTCCCATTTTAAACTGCATTTTAAGAGTAAGGTCAATAAAA GTAAATTTTGTTTTAAAATCCCTCCCCTGCCCCCTCTTATGAGGATTGAGATAGGGGAGGGATGCGTGTGGGTGCCACTC CAACATGACTAAAAATTATATTAATGTAGAAATCCCTATAACGGACCAGTCTTGTATCTTTCTATGAGCAATGCTGTTTA GGCCTTTACATACTATTAGAGGTACACTTCTATAATGCTGACTACTATAGCTTGGAACCTGGAAATTCCCTCAGTACTAC ATAGCATATTTTCCATGTTGGTTTGGATTTCCTTAATTTAACTCCAATTAAGAGATCTTGTAAATTTTACTAGATGTTTG GCTAAAACTTGAAATGGTGCACTGATTTGTAATCCCCTTTTTAGCATCAAAAGTACATAAGATTTTATACACACACAATC TGTTTGATGCTGCACTGATTTGAGTGGGTACTTTTTATTTCTCAAATTGTGTAATATCCATACAGGATGAGATAGCATCT TCATTCCAGATTGTATGCTCAGTTTCTTTTCTGATATGATGTTTGTTTACCTTCATTATCGAATTAAGGACTTCTTATCG AATGCAGCAAAACCATGCCCGTGGAGGAGATCTTGACCATTGATGTTAAGCCTGGTTGGAAGAAGGGGACAAAGATCACA TTCCCAGAGAAGGGTAATGAACAGCCAAATATAGCACCTGCTGATCTTGTTTTTGTCATCGACGAAAAGCCGCAGAGTGT TTTCACCCGCGATGGAAATGATCTGATTGTCACCCAGAAGATATCACTTGTCGAGGCCTTAACTGGTTACACAGTGCAGC TCACTACCTTGGATGGTAGAAACTTAAGCATACTAATCAACAATATTATCCATCCCAACTATGAGGAGGTTGTCCCAAAA GAAGGAATGCCACTCTCTAAGGATCCATCAAAGAAAGGGAACTTGAGGATAAAATTCAACATCAAGTTCCCAACTCAGCT CAATGATGAACAAAAAGCAGGAATCAGGAAACTCTTGGCTGCCTCAGCCTGAG
CDS sequence (LotjaGi3g1v0241900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGTGGACTATTACAAAATCTTGCAGGTTGATAAGATTGCTACAGATGATGACTTGAAGAAGGCTTATAGAAAACT CGCCATGAAATGGCACCCTGATAAGAATCCAAGCAACAAAAAAGAAGCTGAAGCTAAGTTTAAGCAAATTTCAGAAGCCT ACGAGTTTTTAGCTTTCTCAGAAGTTGGGAGTAGAAAAGTGAAATTCAATCATATGGGTACTGCAAAGTTTTTAGTGCTA AGTGATCCTGACAAGAGAGCTATCTATGATCAATATGGAGAAGAGGGTTTGAAGGGTCAGGTTCCCCCTCCTGATCCTGG TGGTGGTGGTGGTGGTTGTGGTGGCAGCACTACTTTCTATTCCACAGGAGATTTCCCAGGATCGTTTCGATTCAATCCAA GGAATGCTGATGACATTTTTGCAGAGTTTTTTGGGTTCTCAAGCCCCTTTGGTGGCATGGATGGGAGAGGTTGTGGTAGT GGCATGAGATCCAGGTTCTCTGGTGGTATGTTTGATGATAATATGTTTGGATCTTTTGGGGAAGGTGGAAGAGTAAATGT GAATCAAGGTGCAACGCGCAAAGCTCCTCCCATTGAGAATAAGCTTCCCTGTACACTTGAGGAGATATATAGAGGGACAA CAAAAAAGATGAAGATCTCTAGAGAGATTGCAGATGCCAGTGGCAAAACCATGCCCGTGGAGGAGATCTTGACCATTGAT GTTAAGCCTGGTTGGAAGAAGGGGACAAAGATCACATTCCCAGAGAAGGGTAATGAACAGCCAAATATAGCACCTGCTGA TCTTGTTTTTGTCATCGACGAAAAGCCGCAGAGTGTTTTCACCCGCGATGGAAATGATCTGATTGTCACCCAGAAGATAT CACTTGTCGAGGCCTTAACTGGTTACACAGTGCAGCTCACTACCTTGGATGGTAGAAACTTAAGCATACTAATCAACAAT ATTATCCATCCCAACTATGAGGAGGTTGTCCCAAAAGAAGGAATGCCACTCTCTAAGGATCCATCAAAGAAAGGGAACTT GAGGATAAAATTCAACATCAAGTTCCCAACTCAGCTCAATGATGAACAAAAAGCAGGAATCAGGAAACTCTTGGCTGCCT CAGCCTGA
Protein sequence (LotjaGi3g1v0241900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVDYYKILQVDKIATDDDLKKAYRKLAMKWHPDKNPSNKKEAEAKFKQISEAYEFLAFSEVGSRKVKFNHMGTAKFLVL SDPDKRAIYDQYGEEGLKGQVPPPDPGGGGGGCGGSTTFYSTGDFPGSFRFNPRNADDIFAEFFGFSSPFGGMDGRGCGS GMRSRFSGGMFDDNMFGSFGEGGRVNVNQGATRKAPPIENKLPCTLEEIYRGTTKKMKISREIADASGKTMPVEEILTID VKPGWKKGTKITFPEKGNEQPNIAPADLVFVIDEKPQSVFTRDGNDLIVTQKISLVEALTGYTVQLTTLDGRNLSILINN IIHPNYEEVVPKEGMPLSKDPSKKGNLRIKFNIKFPTQLNDEQKAGIRKLLAASA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 58 | 58 | 2.5E-164 | – | |
| Gene3D | 1 | 102 | 102 | 2.1E-29 | ||
| PANTHER | 1 | 58 | 58 | 2.5E-164 | – | |
| SUPERFAMILY | 3 | 120 | 118 | 1.47E-22 | ||
| SMART | 3 | 85 | 83 | 1.6E-28 | ||
| CDD | 4 | 57 | 54 | 2.29886E-24 | ||
| Pfam | 4 | 58 | 55 | 4.7E-22 | ||
| ProSiteProfiles | 4 | 93 | 90 | 21.072 | ||
| PRINTS | 6 | 24 | 19 | 1.3E-24 | ||
| PRINTS | 24 | 39 | 16 | 1.3E-24 | ||
| PRINTS | 42 | 62 | 21 | 1.3E-24 | ||
| PANTHER | 67 | 372 | 306 | 2.5E-164 | – | |
| PANTHER | 67 | 372 | 306 | 2.5E-164 | – | |
| PRINTS | 85 | 104 | 20 | 1.3E-24 | ||
| Gene3D | 194 | 276 | 83 | 1.2E-31 | – | |
| CDD | 196 | 359 | 164 | 3.83607E-48 | – | |
| SUPERFAMILY | 197 | 276 | 80 | 6.41E-15 | ||
| Pfam | 198 | 356 | 159 | 1.0E-41 | ||
| Gene3D | 278 | 357 | 80 | 1.1E-25 | – | |
| SUPERFAMILY | 279 | 365 | 87 | 1.96E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Molecular function | Unfolded protein binding | Interacting selectively and non-covalently with an unfolded protein. |
Expression pattern of LotjaGi3g1v0241900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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