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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0249200 |
| Transcript ID | LotjaGi3g1v0249200.2 |
| Related isoforms 9 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyubiquitin; TAIR: AT4G05320.2 polyubiquitin 10; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|A0A0P0X005|A0A0P0X005_ORYSJ protein; Found in the gene: LotjaGi3g1v0249200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:41395092..41398152) extracted from Lotus japonicus Gifu genome v1.2.
CGAAGATTAGTGTGATGCTAATCTTGCCGTGTATGCCAGCTTTTCCGTACACGTGGAACAATTTCATTCGTGGATCATTG ATATTTTCCTCGTTGAGTCGGCAAAACGCAGATATAAATACCACTCCTCCTTGCCCTTCTTTCTCATCGCAATTCTCAAT TGAACGATTCTACGATTCAACGCAAACCCAATCTCGCAGTTCCTCTCCTCTCAATTTCGTTTTTTTCAAGGTATGTCTCG GTTTTCATACAATTCTATCAGGTTTCGATTATTGATTGTACATAGGGTTTTGATTTTCATCACATGATTGAGTTTCAATA TTTTGATCTCTTTGCGAGATTGTGTTGATGTTCTTGTCAATAGGAGTTCGATGTCAATTCTGAACCCTAATTTATTGTTC AATTTTAGATTTGGAATTCGAATAGGGTTATGTTTCCGTTGTATATTAGGGTTTGTGATTTTAGGGTTTGTGAATTGATT TCTTAACCCTAATTTGTTGTTCAATTTTAGATTTGGAATTCGAATAGGGTTATGTTTTCCTTGTATATTAGGGTTTGTGA TTTTAGGGTTTGTGAATTGATCTCTCATGTTTGGTGTATTGTTTTGCACAGATGCAAATCTTCGTGAAAACCCTAACCGG GAAGACAATCACTCTCGAGGTAGAGAGTTCAGATACCATTGACAACGTGAAAGCTAAGATCCAAGACAAGGAAGGGATCC CACCTGATCAGCAAAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGTCGCACCCTTGCAGACTACAACATCCAAAAG GAGTCAACCCTTCACCTCGTTCTTCGTCTCAGGGGTGGTATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACAATCAC CCTCGAGGTTGAATCCTCAGACACTATCGATAATGTCAAGGCGAAGATCCAAGACAAAGAGGGTATTCCTCCGGATCAGC AAAGGTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACCCTCGCTGATTACAACATCCAGAAGGAATCTACCCTT CATTTGGTGCTTCGATTGAGAGGTGGTATGCAGATTTTTGTTAAGACCCTGACAGGGAAGACCATAACATTGGAAGTGGA GAGTTCAGACACCATTGATAATGTAAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGAGGCTCATCT TCGCTGGGAAACAACTTGAGGATGGAAGGACCCTTGCTGACTATAACATCCAGAAGGAGTCTACCCTGCACTTGGTGCTG CGATTGAGAGGTGGCATGCAGATTTTTGTCAAGACCCTGACAGGAAAGACCATTACTTTGGAGGTTGAGAGTTCAGACAC GATTGATAATGTCAAAGCTAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAGCAGAGGCTTATCTTTGCTGGTAAGC AGTTGGAAGATGGAAGAACCCTGGCTGACTATAACATCCAGAAGGAATCTACCCTTCACTTGGTTTTGCGTCTTCGTGGT GGGATGCAAATTTTTGTGAAGACATTGACGGGGAAGACCATAACTCTGGAGGTTGAGAGTTCTGATACGATTGATAATGT CAAAGCTAAGATTCAGGATAAGGAGGGTATCCCACCGGACCAGCAGAGGCTTATCTTTGCTGGTAAGCAGTTGGAAGATG GAAGAACCCTGGCTGACTATAACATCCAGAAGGAATCTACCCTTCACTTGGTTTTGCGTCTTCGTGGTGGGATGCAAATT TTTGTGAAGACATTGACGGGGAAGACCATAACTCTGGAGGTTGAGAGTTCTGATACAATTGACAATGTGAAAGCTAAGAT TCAGGATAAGGAAGGTATCCCTCCGGATCAGCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAAGATGGAAGAACCCTTG CAGATTATAATATCCAGAAGGAGTCTACACTGCACTTGGTTTTGCGGCTTCGTGGTGGGATGCAAATCTTTGTGAAGACC TTGACAGGGAAGACTATCACATTGGAGGTGGAAAGCTCTGATACAATTGACAATGTTAAGGCGAAGATCCAAGACAAGGA GGGTATTCCTCCAGACCAGCAGAGACTGATTTTTGCTGGCAAGCAGTTGGAGGATGGACGTACTCTGGCTGATTATAATA TTCAGAAGGAGTCCACCCTGCATCTTGTCCTGCGCCTTCGTGGTGGCTTCTGAGCTTTAAAGGGCTTTACCTCTGTGTCA GTTCCCTTTGCGTTGGTTTAGTGATTCTGCTATTAAGATCTTGTCCTTAGTTTGTATTTTGCAGCCCCTTTATAGTGGCT GTAACTATGTTTTAATGTTTGTGACCTGCTGTTATACTTCCATTCCCTCATGTCGAACCTTTAAATAGAATAATGTCATC TTTGTGTTTCTTTTAATTTCATTGCCTGGTAGTTTTTTTTTTGGTTTATTTGTGGCTGACTTTTATATTCTCCATTGTCA ATTTGAGCTGGCATAACATAAAAACTTCATAGGATAAGATATAGACTTCATTTGTGGCTGACCTTTGAATTCTGATGTTG TTACTCAGCCAATCTATTTTATCCTACTTATTGCCTTAGCAAACTGCAATGCCCAGTTCTAGGCAAATTCTTTGTCACCC ATCCTTAACTTTTACAATTTTTCGGGACTGGTAGTAATCAGATGTCCAAGGATATGTTTATTATTTTGTTTAGAAAATGG GTTGGTTTTACTTGCTCAGATTCTTGACTCCTCACTAATTGTATCTAGGAAATAACTAGATGAAGTTTGTAGATAGTTGA TCTCTTGAAACTAATGAGTGAATACCGAATATTGATAGGAGGTACTTTTATTTAGACAGTGATTGCTGAATATATTGACA ATGAACTTGTAAATTGTAATGATCTTAACAAATGACTTGCAGGCTCAAATGAGTTTTTATGTTTTCCAAGAGTGATTGTT CTATCCATAAACAATGATACTTCCAATTCCAAAGATAGTTTTCCTTTCCCTTAGTTAGATGTGGTAAACTTCAAGATGAT TTTTACTTGTGTATGAATGAT
CDS sequence (LotjaGi3g1v0249200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTAATCTTGCCGTGTATGCCAGCTTTTCCGTACACGTGGAACAATTTCATTCGTGGATCATTGATATTTTCCTCGTT GAGTCGGCAAAACGCAGATATAAATACCACTCCTCCTTGCCCTTCTTTCTCATCGCAATTCTCAATTGAACGATTCTACG ATTCAACGCAAACCCAATCTCGCAGTTCCTCTCCTCTCAATTTCGTTTTTTTCAAGATGCAAATCTTCGTGAAAACCCTA ACCGGGAAGACAATCACTCTCGAGGTAGAGAGTTCAGATACCATTGACAACGTGAAAGCTAAGATCCAAGACAAGGAAGG GATCCCACCTGATCAGCAAAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGTCGCACCCTTGCAGACTACAACATCC AAAAGGAGTCAACCCTTCACCTCGTTCTTCGTCTCAGGGGTGGTATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACA ATCACCCTCGAGGTTGAATCCTCAGACACTATCGATAATGTCAAGGCGAAGATCCAAGACAAAGAGGGTATTCCTCCGGA TCAGCAAAGGTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACCCTCGCTGATTACAACATCCAGAAGGAATCTA CCCTTCATTTGGTGCTTCGATTGAGAGGTGGTATGCAGATTTTTGTTAAGACCCTGACAGGGAAGACCATAACATTGGAA GTGGAGAGTTCAGACACCATTGATAATGTAAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGAGGCT CATCTTCGCTGGGAAACAACTTGAGGATGGAAGGACCCTTGCTGACTATAACATCCAGAAGGAGTCTACCCTGCACTTGG TGCTGCGATTGAGAGGTGGCATGCAGATTTTTGTCAAGACCCTGACAGGAAAGACCATTACTTTGGAGGTTGAGAGTTCA GACACGATTGATAATGTCAAAGCTAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAGCAGAGGCTTATCTTTGCTGG TAAGCAGTTGGAAGATGGAAGAACCCTGGCTGACTATAACATCCAGAAGGAATCTACCCTTCACTTGGTTTTGCGTCTTC GTGGTGGGATGCAAATTTTTGTGAAGACATTGACGGGGAAGACCATAACTCTGGAGGTTGAGAGTTCTGATACAATTGAC AATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATCCCTCCGGATCAGCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGA AGATGGAAGAACCCTTGCAGATTATAATATCCAGAAGGAGTCTACACTGCACTTGGTTTTGCGGCTTCGTGGTGGGATGC AAATCTTTGTGAAGACCTTGACAGGGAAGACTATCACATTGGAGGTGGAAAGCTCTGATACAATTGACAATGTTAAGGCG AAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAGCAGAGACTGATTTTTGCTGGCAAGCAGTTGGAGGATGGACGTAC TCTGGCTGATTATAATATTCAGAAGGAGTCCACCCTGCATCTTGTCCTGCGCCTTCGTGGTGGCTTCTGA
Protein sequence (LotjaGi3g1v0249200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLILPCMPAFPYTWNNFIRGSLIFSSLSRQNADINTTPPCPSFSSQFSIERFYDSTQTQSRSSSPLNFVFFKMQIFVKTL TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESS DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTID NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 52 | 311 | 260 | 0.0 | – | |
| PANTHER | 52 | 311 | 260 | 0.0 | – | |
| Gene3D | 70 | 148 | 79 | 2.6E-45 | – | |
| SUPERFAMILY | 72 | 148 | 77 | 4.98E-34 | ||
| SMART | 73 | 144 | 72 | 3.0E-35 | ||
| CDD | 73 | 148 | 76 | 2.59517E-48 | – | |
| ProSiteProfiles | 73 | 148 | 76 | 30.452 | ||
| Pfam | 75 | 146 | 72 | 2.9E-33 | ||
| PRINTS | 83 | 103 | 21 | 1.1E-37 | ||
| ProSitePatterns | 99 | 124 | 26 | - | ||
| PRINTS | 104 | 124 | 21 | 1.1E-37 | ||
| PRINTS | 125 | 146 | 22 | 1.1E-37 | ||
| SUPERFAMILY | 148 | 224 | 77 | 9.95E-34 | ||
| CDD | 149 | 224 | 76 | 2.59517E-48 | – | |
| SMART | 149 | 220 | 72 | 3.0E-35 | ||
| Gene3D | 149 | 224 | 76 | 3.4E-45 | – | |
| ProSiteProfiles | 149 | 224 | 76 | 30.452 | ||
| Pfam | 151 | 222 | 72 | 2.9E-33 | ||
| PANTHER | 157 | 364 | 208 | 0.0 | – | |
| PANTHER | 157 | 364 | 208 | 0.0 | – | |
| ProSitePatterns | 175 | 200 | 26 | - | ||
| SUPERFAMILY | 224 | 300 | 77 | 1.37E-33 | ||
| SMART | 225 | 296 | 72 | 3.0E-35 | ||
| CDD | 225 | 300 | 76 | 2.59517E-48 | – | |
| ProSiteProfiles | 225 | 300 | 76 | 30.452 | ||
| Gene3D | 225 | 300 | 76 | 3.4E-45 | – | |
| Pfam | 227 | 298 | 72 | 2.9E-33 | ||
| ProSitePatterns | 251 | 276 | 26 | - | ||
| SUPERFAMILY | 300 | 376 | 77 | 9.95E-34 | ||
| CDD | 301 | 376 | 76 | 2.59517E-48 | – | |
| ProSiteProfiles | 301 | 376 | 76 | 30.452 | ||
| Gene3D | 301 | 376 | 76 | 5.2E-45 | – | |
| SMART | 301 | 372 | 72 | 3.0E-35 | ||
| Pfam | 303 | 374 | 72 | 2.9E-33 | ||
| PANTHER | 307 | 528 | 222 | 0.0 | – | |
| PANTHER | 307 | 528 | 222 | 0.0 | – | |
| ProSitePatterns | 327 | 352 | 26 | - | ||
| SUPERFAMILY | 376 | 452 | 77 | 9.95E-34 | ||
| ProSiteProfiles | 377 | 452 | 76 | 30.452 | ||
| SMART | 377 | 448 | 72 | 3.0E-35 | ||
| Gene3D | 377 | 453 | 77 | 3.2E-45 | – | |
| CDD | 377 | 452 | 76 | 2.59517E-48 | – | |
| Pfam | 379 | 450 | 72 | 2.9E-33 | ||
| ProSitePatterns | 403 | 428 | 26 | - | ||
| SUPERFAMILY | 452 | 528 | 77 | 1.04E-33 | ||
| SMART | 453 | 524 | 72 | 3.0E-35 | ||
| ProSiteProfiles | 453 | 528 | 76 | 30.452 | ||
| CDD | 453 | 528 | 76 | 2.59517E-48 | – | |
| Gene3D | 454 | 529 | 76 | 9.0E-45 | – | |
| Pfam | 455 | 526 | 72 | 2.9E-33 | ||
| ProSitePatterns | 479 | 504 | 26 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0249200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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