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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0249200 |
| Transcript ID | LotjaGi3g1v0249200.6 |
| Related isoforms 9 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyubiquitin; TAIR: AT4G02890.3 Ubiquitin family protein; Swiss-Prot: sp|P0CG85|UBI1P_NICSY Polyubiquitin; TrEMBL-Plants: tr|A0A194YL57|A0A194YL57_SORBI Uncharacterized protein; Found in the gene: LotjaGi3g1v0249200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:41395933..41397839) extracted from Lotus japonicus Gifu genome v1.2.
TTCAATATTTTGATCTCTTTGCGAGATTGTGTTGATGTTCTTGTCAATAGGAGTTCGATGTCAATTCTGAACCCTAATTT ATTGTTCAATTTTAGATTTGGAATTCGAATAGGGTTATGTTTCCGTTGTATATTAGGGTTTGTGATTTTAGGGTTTGTGA ATTGATTTCTTAACCCTAATTTGTTGTTCAATTTTAGATTTGGAATTCGAATAGGGTTATGTTTTCCTTGTATATTAGGG TTTGTGATTTTAGGGTTTGTGAATTGATCTCTCATGTTTGGTGTATTGTTTTGCACAGATGCAAATCTTCGTGAAAACCC TAACCGGGAAGACAATCACTCTCGAGGTAGAGAGTTCAGATACCATTGACAACGTGAAAGCTAAGATCCAAGACAAGGAA GGGATCCCACCTGATCAGCAAAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGTCGCACCCTTGCAGACTACAACAT CCAAAAGGAGTCAACCCTTCACCTCGTTCTTCGTCTCAGGGGTGGTATGCAGATCTTTGTCAAGACCTTGACAGGGAAAA CAATCACCCTCGAGGTTGAATCCTCAGACACTATCGATAATGTCAAGGCGAAGATCCAAGACAAAGAGGGTATTCCTCCG GATCAGCAAAGGTTGATTTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACCCTCGCTGATTACAACATCCAGAAGGAATC TACCCTTCATTTGGTGCTTCGATTGAGAGGTGGTATGCAGATTTTTGTTAAGACCCTGACAGGGAAGACCATAACATTGG AAGTGGAGAGTTCAGACACCATTGATAATGTAAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGAGG CTCATCTTCGCTGGGAAACAACTTGAGGATGGAAGGACCCTTGCTGACTATAACATCCAGAAGGAGTCTACCCTGCACTT GGTGCTGCGATTGAGAGGTGGCATGCAGATTTTTGTCAAGACCCTGACAGGAAAGACCATTACTTTGGAGGTTGAGAGTT CAGACACGATTGATAATGTCAAAGCTAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAGCAGAGGCTTATCTTTGCT GGTAAGCAGTTGGAAGATGGAAGAACCCTGGCTGACTATAACATCCAGAAGGAATCTACCCTTCACTTGGTTTTGCGTCT TCGTGGTGGGATGCAAATTTTTGTGAAGACATTGACGGGGAAGACCATAACTCTGGAGGTTGAGAGTTCTGATACGATTG ATAATGTCAAAGCTAAGATTCAGGATAAGGAGGGTATCCCACCGGACCAGCAGAGGCTTATCTTTGCTGGTAAGCAGTTG GAAGATGGAAGAACCCTGGCTGACTATAACATCCAGAAGGAATCTACCCTTCACTTGGTTTTGCGTCTTCGTGGTGGGAT GCAAATTTTTGTGAAGACATTGACGGGGAAGACCATAACTCTGGAGGTTGAGAGTTCTGATACAATTGACAATGTGAAAG CTAAGATTCAGGATAAGGAAGGTATCCCTCCGGATCAGCAGAGGCTTATCTTTGCTGGGAAGCAGTTGGAAGATGGAAGA ACCCTTGCAGATTATAATATCCAGAAGGAGTCTACACTGCACTTGGTTTTGCGGCTTCGTGGTGGGATGCAAATCTTTGT GAAGACCTTGACAGGGAAGACTATCACATTGGAGGTGGAAAGCTCTGATACAATTGACAATGTTAAGGCGAAGATCCAAG ACAAGGAGGGTATTCCTCCAGACCAGCAGAGACTGATTTTTGCTGGCAAGCAGTTGGAGGATGGACGTACTCTGGCTGAT TATAATATTCAGAAGGAGTCCACCCTGCATCTTGTCCTGCGCCTTCGTGGTGGCTTCTGAGCTTTAA
CDS sequence (LotjaGi3g1v0249200.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTATCTTTGCTGGTAAGCAGTTGGAAGATGGAAGAACCCTGGCTGACTATAACATCCAGAAGGAATCTACCCTTCA CTTGGTTTTGCGTCTTCGTGGTGGGATGCAAATTTTTGTGAAGACATTGACGGGGAAGACCATAACTCTGGAGGTTGAGA GTTCTGATACGATTGATAATGTCAAAGCTAAGATTCAGGATAAGGAGGGTATCCCACCGGACCAGCAGAGGCTTATCTTT GCTGGTAAGCAGTTGGAAGATGGAAGAACCCTGGCTGACTATAACATCCAGAAGGAATCTACCCTTCACTTGGTTTTGCG TCTTCGTGGTGGGATGCAAATTTTTGTGAAGACATTGACGGGGAAGACCATAACTCTGGAGGTTGAGAGTTCTGATACAA TTGACAATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATCCCTCCGGATCAGCAGAGGCTTATCTTTGCTGGGAAGCAG TTGGAAGATGGAAGAACCCTTGCAGATTATAATATCCAGAAGGAGTCTACACTGCACTTGGTTTTGCGGCTTCGTGGTGG GATGCAAATCTTTGTGAAGACCTTGACAGGGAAGACTATCACATTGGAGGTGGAAAGCTCTGATACAATTGACAATGTTA AGGCGAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAGCAGAGACTGATTTTTGCTGGCAAGCAGTTGGAGGATGGA CGTACTCTGGCTGATTATAATATTCAGAAGGAGTCCACCCTGCATCTTGTCCTGCGCCTTCGTGGTGGCTTCTGA
Protein sequence (LotjaGi3g1v0249200.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG RTLADYNIQKESTLHLVLRLRGGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 36 | 36 | 7.9E-17 | – | |
| ProSiteProfiles | 1 | 35 | 35 | 15.296 | ||
| PANTHER | 2 | 176 | 175 | 0.0 | – | |
| PANTHER | 2 | 176 | 175 | 0.0 | – | |
| CDD | 2 | 35 | 34 | 2.42543E-17 | – | |
| Pfam | 2 | 33 | 32 | 2.5E-11 | ||
| SUPERFAMILY | 2 | 35 | 34 | 9.67E-12 | ||
| SUPERFAMILY | 35 | 111 | 77 | 3.86E-34 | ||
| SMART | 36 | 107 | 72 | 3.0E-35 | ||
| ProSiteProfiles | 36 | 111 | 76 | 30.452 | ||
| CDD | 36 | 111 | 76 | 9.12394E-50 | – | |
| Gene3D | 37 | 111 | 75 | 1.0E-45 | – | |
| Pfam | 38 | 109 | 72 | 9.2E-34 | ||
| PANTHER | 42 | 263 | 222 | 0.0 | – | |
| PANTHER | 42 | 263 | 222 | 0.0 | – | |
| PRINTS | 46 | 66 | 21 | 1.6E-38 | ||
| ProSitePatterns | 62 | 87 | 26 | - | ||
| PRINTS | 67 | 87 | 21 | 1.6E-38 | ||
| PRINTS | 88 | 109 | 22 | 1.6E-38 | ||
| SUPERFAMILY | 111 | 187 | 77 | 4.06E-34 | ||
| SMART | 112 | 183 | 72 | 3.0E-35 | ||
| CDD | 112 | 187 | 76 | 9.12394E-50 | – | |
| ProSiteProfiles | 112 | 187 | 76 | 30.452 | ||
| Gene3D | 112 | 188 | 77 | 6.3E-46 | – | |
| Pfam | 114 | 185 | 72 | 9.2E-34 | ||
| ProSitePatterns | 138 | 163 | 26 | - | ||
| SUPERFAMILY | 187 | 263 | 77 | 4.27E-34 | ||
| CDD | 188 | 263 | 76 | 9.12394E-50 | – | |
| SMART | 188 | 259 | 72 | 3.0E-35 | ||
| ProSiteProfiles | 188 | 263 | 76 | 30.452 | ||
| Gene3D | 189 | 264 | 76 | 2.8E-45 | – | |
| Pfam | 190 | 261 | 72 | 9.2E-34 | ||
| ProSitePatterns | 214 | 239 | 26 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0249200.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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