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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0280800 |
| Transcript ID | LotjaGi3g1v0280800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP dependent RNA helicase; TAIR: AT3G02065.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q3EBD3|RH41_ARATH DEAD-box ATP-dependent RNA helicase 41; TrEMBL-Plants: tr|A0A151SQV8|A0A151SQV8_CAJCA DEAD-box ATP-dependent RNA helicase 41; Found in the gene: LotjaGi3g1v0280800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:56186155..56189099) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTCTATAAAAGCCAAGCAACCCATTCAGAACTTGAAGAAGAACAAGAACAAGAACCGTTTGGGGCGCACTCAGTTT TCGAAACCCTATATAAACTCTTTCTTCTTCCTCCTCCTTCTCCTGAGGGACAACATGGCTGATTCTCACCCCATTGCCAA TGACTCACCGAAGATTTCATCGCTCGCAACCGGAGGAGATGCACCTAATGGTAACTCCTAATTCCTTCACCTGAATTTTG CTTTTATATGCTTCAATTCGTGTACCCTTTAACATGGTCTCTTGCTGTGAGTTGTTAATTGAACTGATTGGAATGAAATT TTTATACCCACTTTGTCAATTCAAATAAAAATTGCTAGTCATGCTTTTTTGGCACTGATTTTAATCCAGTGGATAATAAT AGTCTTTTTGAAAATTTGGATGGAGTCGACGCAAACATGATTTCATGTATTTCAAACCACCAATGCAGTAGATAGAATTT TCCATGTTGAATTTAATTTAACGTGGATCGGAGAAGTACGATTTTGACGTTGAGTTAAACGAAAATCCAAATGCACACTA AATCATGGAGTTTAATCAATGTGGCGGACCTAAGGTTAATTGTTTAGGTTATTGTTACTGTTATTGTATTCCTCATTCAC TTCTTGGTTGGCAGAGTGAACAACCTTTTTGATATTCTAAAGACTCTTGGTTTGAACTTTTTGTGGCTTGGTTTAGAGTG TATTGTCTTCAAGCAAAGCGTTGTTGTTGTTGGTGTAGTAGATCCTGGGATAAATTTTAGGTTATGGTTACTGTTGTTGT TTGTTGTGGTGGAGCTGTTGTTGTTGTTGTTGAATTCCTCACCCAATTCTTGTCTGGCACTTTTTGTGGCTTGGTATGAA ATGTTATGTCTTAAAGCATAGTGTTTTTTGGATTTCTGAAAATACCAACCCAATTGAGCTGATTTTCCTATTTGCAATTT TAGATGCTGGAAATGGTGTCAAGGTGAGTTCTAAGGACCAAAGGGAGGCTCTGCCTGATGAGCCCAAGTGTGTTATATGT GGCCGCTATGGTGAGTATATCTGTGATCAAACTGATGATGATGTTTGCAGCATGGAATGCAAACAATCAATACTGAGCAG AATTGCCAAATCCTCGTCTTCTGTTGGAGGTCCTCCCTTACCCGTAAAGCTACCTGCAGCTGATGAGTGCTTTTATGTTA GAGATACTGATTTCAAATCAGGAGCTTCATCTTCAGGTGGTAATCGGGCTGAATTGCTAAGAAAGAAACTTGACATTCGT GTGAACCGTGATGTTGCGGAGCCGGTTTCGACATTCGCTTCCTGTAACCTCCATGAAAAGCTTCTCCACAATATGGAAGC AGCAGGATATGACAAGCCTACCCCTGTCCAAATGCAAGCAATCCCTATTGCTTTGAAGGGGACAAACTTGCTTGTTTTAG CTGATACAGGATCAGGAAAGACTGATTCCTTTCTTATTCCAATAGTTTCTGAATGTGGGATTCAACGTCTGCTGTATGAT CCAAATAAGAAGAAGCCTTTAGCTATAGTGTTATCACCTACCAGAGAGCTCTGTATACAGATTGAAGAGCATGCTAAAGC GATGGGAAAGAGTTTACCTTTCAAAACTGCCCTTGTGGTAGGCGGTGATGCAATGCCTGGACAAGTCCACCGCATTCAAC AAGGTGTTGAGTTGATTGTGGCAACCCCAGGAAGGCTTATTGATCTTTTAACGAAGCATGAGATTGACTTAGATGATGTG AAGACTTTAGTTGTGGATGAGGTGGACTGCATGCTGCAAAGGGGTTTTCGAGACCAGGTCTTGCAGATATATCAAGCTTT GTCACAACCTCAGGTCTTGATGTTTACTGCAACAATAACTAGTGACATAGAAAAAATGGCAAACTCTCTGGCAAAAGACA TTGCGGTTGTAACTGTTGGGAATCCTAATTGTCCAAATAAGGCGGTCAAGCAGATAGCTATCTGGGTTGATTCAAAACAA AAGAAGTCGAAGCTGTTTGAGATCATGCGAAGTGAACAACATTTTAAGCCACCTGTTGTCATATATGTCGGCTCCAGAAT CGGGGCAGATCTCCTGGCGGATACGATTAAAGTTGTGATTGGAATTAAAGCAGTTTCAATTCATGGTGAAAAGCCTATGA AGGAAAGGAGAGAAATAATGCAATCCTTCGCAGCGGGCGAGGTCACAGTGATTGTGGCTACTGGAGTATTGGGTAGGGGA GTTGATCTGCTTGGTGTAAGACAGGTAATTGTTTTCGACATGCCTAATTCCATTGACGAGTATGTTCATATGATTGGAAG GGCATCTAGGATGGGAGAGGAAGGTCAAGCCATAGTTTTTGTGAATAGCTCGAATAAGAAAGTTTTTTGTGAACTAATTG GTGTTCTAAAATCTGCTGGTGCACCTATTCCTCGGGAGCTGCTCAATTCACATTATACCGCAGCATTTGTCTCTGGTAGC AAGTGTTCAAAGAAGAGAACGCATAAATGAAGTTTCTTGTTACTTGCTTAATTCCGGCCCTAATTTTGATGTTTTTTTTT ATATGAATAAATAAATGGGGCTAAAGCCCTTCATTTGATGTTGTCAACTTAGAAAATGATACCAGAAATTACATGCATAT TTACACCTTAAAAAGATGAAGATTTGGTGACTTGATGGGATGGTTTTGTAATTAGAGGAAGTATTGGAGTTGTTTCGGTT TGTAACCAATAACGTGAAAGTTGAGATTTGAGAAAAGAATGGCATCTAAGTGCTTGTGATTATATTGTCTCTCACCGTCT AAAAAAAAAGAAGATTATATTGTCTCTCTACCTTCGCCGTTAGAACCTACATTTCGTCTGCCATCGCCCCCCAAACCACC ACAGATCATAGCCCCAACGACACCCAACCTCAACTTCACACCAGAATCCCCAACAACAGAATTAG
CDS sequence (LotjaGi3g1v0280800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATTCTCACCCCATTGCCAATGACTCACCGAAGATTTCATCGCTCGCAACCGGAGGAGATGCACCTAATGATGC TGGAAATGGTGTCAAGGTGAGTTCTAAGGACCAAAGGGAGGCTCTGCCTGATGAGCCCAAGTGTGTTATATGTGGCCGCT ATGGTGAGTATATCTGTGATCAAACTGATGATGATGTTTGCAGCATGGAATGCAAACAATCAATACTGAGCAGAATTGCC AAATCCTCGTCTTCTGTTGGAGGTCCTCCCTTACCCGTAAAGCTACCTGCAGCTGATGAGTGCTTTTATGTTAGAGATAC TGATTTCAAATCAGGAGCTTCATCTTCAGGTGGTAATCGGGCTGAATTGCTAAGAAAGAAACTTGACATTCGTGTGAACC GTGATGTTGCGGAGCCGGTTTCGACATTCGCTTCCTGTAACCTCCATGAAAAGCTTCTCCACAATATGGAAGCAGCAGGA TATGACAAGCCTACCCCTGTCCAAATGCAAGCAATCCCTATTGCTTTGAAGGGGACAAACTTGCTTGTTTTAGCTGATAC AGGATCAGGAAAGACTGATTCCTTTCTTATTCCAATAGTTTCTGAATGTGGGATTCAACGTCTGCTGTATGATCCAAATA AGAAGAAGCCTTTAGCTATAGTGTTATCACCTACCAGAGAGCTCTGTATACAGATTGAAGAGCATGCTAAAGCGATGGGA AAGAGTTTACCTTTCAAAACTGCCCTTGTGGTAGGCGGTGATGCAATGCCTGGACAAGTCCACCGCATTCAACAAGGTGT TGAGTTGATTGTGGCAACCCCAGGAAGGCTTATTGATCTTTTAACGAAGCATGAGATTGACTTAGATGATGTGAAGACTT TAGTTGTGGATGAGGTGGACTGCATGCTGCAAAGGGGTTTTCGAGACCAGGTCTTGCAGATATATCAAGCTTTGTCACAA CCTCAGGTCTTGATGTTTACTGCAACAATAACTAGTGACATAGAAAAAATGGCAAACTCTCTGGCAAAAGACATTGCGGT TGTAACTGTTGGGAATCCTAATTGTCCAAATAAGGCGGTCAAGCAGATAGCTATCTGGGTTGATTCAAAACAAAAGAAGT CGAAGCTGTTTGAGATCATGCGAAGTGAACAACATTTTAAGCCACCTGTTGTCATATATGTCGGCTCCAGAATCGGGGCA GATCTCCTGGCGGATACGATTAAAGTTGTGATTGGAATTAAAGCAGTTTCAATTCATGGTGAAAAGCCTATGAAGGAAAG GAGAGAAATAATGCAATCCTTCGCAGCGGGCGAGGTCACAGTGATTGTGGCTACTGGAGTATTGGGTAGGGGAGTTGATC TGCTTGGTGTAAGACAGGTAATTGTTTTCGACATGCCTAATTCCATTGACGAGTATGTTCATATGATTGGAAGGGCATCT AGGATGGGAGAGGAAGGTCAAGCCATAGTTTTTGTGAATAGCTCGAATAAGAAAGTTTTTTGTGAACTAATTGGTGTTCT AAAATCTGCTGGTGCACCTATTCCTCGGGAGCTGCTCAATTCACATTATACCGCAGCATTTGTCTCTGGTAGCAAGTGTT CAAAGAAGAGAACGCATAAATGA
Protein sequence (LotjaGi3g1v0280800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADSHPIANDSPKISSLATGGDAPNDAGNGVKVSSKDQREALPDEPKCVICGRYGEYICDQTDDDVCSMECKQSILSRIA KSSSSVGGPPLPVKLPAADECFYVRDTDFKSGASSSGGNRAELLRKKLDIRVNRDVAEPVSTFASCNLHEKLLHNMEAAG YDKPTPVQMQAIPIALKGTNLLVLADTGSGKTDSFLIPIVSECGIQRLLYDPNKKKPLAIVLSPTRELCIQIEEHAKAMG KSLPFKTALVVGGDAMPGQVHRIQQGVELIVATPGRLIDLLTKHEIDLDDVKTLVVDEVDCMLQRGFRDQVLQIYQALSQ PQVLMFTATITSDIEKMANSLAKDIAVVTVGNPNCPNKAVKQIAIWVDSKQKKSKLFEIMRSEQHFKPPVVIYVGSRIGA DLLADTIKVVIGIKAVSIHGEKPMKERREIMQSFAAGEVTVIVATGVLGRGVDLLGVRQVIVFDMPNSIDEYVHMIGRAS RMGEEGQAIVFVNSSNKKVFCELIGVLKSAGAPIPRELLNSHYTAAFVSGSKCSKKRTHK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 38 | 38 | - | – | |
| Gene3D | 27 | 85 | 59 | 1.8E-25 | – | |
| PANTHER | 34 | 484 | 451 | 9.2E-93 | – | |
| PANTHER | 34 | 484 | 451 | 9.2E-93 | – | |
| Pfam | 46 | 72 | 27 | 7.8E-7 | ||
| Gene3D | 105 | 349 | 245 | 9.4E-71 | – | |
| ProSiteProfiles | 141 | 169 | 29 | 11.097 | ||
| CDD | 152 | 349 | 198 | 4.2692E-86 | – | |
| SMART | 160 | 363 | 204 | 1.7E-52 | ||
| Pfam | 165 | 336 | 172 | 1.3E-43 | ||
| ProSiteProfiles | 172 | 348 | 177 | 26.938 | ||
| SUPERFAMILY | 216 | 498 | 283 | 9.47E-63 | ||
| Gene3D | 350 | 524 | 175 | 1.4E-43 | – | |
| ProSiteProfiles | 359 | 522 | 164 | 19.347 | ||
| CDD | 360 | 492 | 133 | 1.14597E-39 | – | |
| Pfam | 374 | 483 | 110 | 5.5E-22 | ||
| SMART | 401 | 483 | 83 | 3.1E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0280800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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