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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0285300 |
| Transcript ID | LotjaGi3g1v0285300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G55530.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1; TrEMBL-Plants: tr|I3S647|I3S647_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0285300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:57548095..57552850) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTATTATCATCATAATTAATGTACCACACGAAAAACACTTTCCCTTTTTTTAAAAATAAATAAATAAATAATATAA AATTGCATCTACAAGCAAAGCTGTTAGCTAAGCAAACCAAAACGGTTGGGAGCAGTGAGTTTAACTTGAGTGATGAGAGT GCATTGTCATTGTGTCACCAACATTCAATTTCAATCCCCAAAATCATCAACAATCTCAATCACTTCACAGCTTCTCTCTC AATTTTGGTAAGTTTCTCTTCTTCTTCTTCTTCTTTTTCAATCATCATTTTCTGCATTATTTGTAATGTGGGGGTTAATT TGGGTTGTTGCTGTTTTTCCCTCTTGCCAATTGCTGATTATTCTTTCTTCATGTTCTGGGTCTCCAAAAGTTTGATCCTT TCGCTGAAATTAAATTGCATTTTCTCCATACCCTATATGATTCAATAAGCAAGGGCAATGCACCTTGACTGAACACATGA TTTTTTATAGAAATTGGAAATCTTTACTGTAATTAATCAATTAAAGTTTTGCAGGTTAAAAAATACTCAATATGCATGGT TCTGATAGTCTGATATATGGATGCATGTATGCTCTGGGGTGTATCATAATCAATTGTAGAATTTCACATCAATTGTGGGA TTCACAGCAGGATTTCACACCATTATCCTACATAAATCACTTCACTTTAGAGTTTAGACCCACATTTACCATACCATTAT TAAGTCTGAGGACACTGATGAAAACGCTTTAAGAACCTGTTAGAAATTTTTTCAATTGTATTCTTTAAACTTTAAAGAGC CAATTACCTAAAGTATGTAAGTGTCCTGATATATGTAAGTTGCTGTATTAAATCAAAAGCACAATGATTGCTTATTTGCA GGTAGCCAGGCATTATCTCTGTGAGTTGTTGCAAAATTTTGCCTTGCAATTATGAGTTTCGTTTTCCGAGGGAGTAGGGG AGATATTGAAAGCGGTTTTTCAGAATATGCTCCTGAGAGAACCACAATGGTATGCTTGCTTCAATGCTGTTTATATGCAC ATGAACCTTTGAAATTTGCATGCACATTCAAATCTTGTTCTAATGCCGCTGTTTTTCTTCATTTTTCCAATTAGCGTGTA CATCCATCTCGGCCAGTTAATAGCAATTCACTGGCTTTTCTGATTACAGGTAATTTAATAACAGCTCATACTTTAATCTT TAGTGATTCATAATAATAGTCTAATCTGTTTCTTATTTTTTTTTTGGCAGTTATTATGCTATTCATTTTATTGAGTTCTC CTCAGATGTCGCATTATCTTTTGGTAAGTTATTTAGCTGATCTGGAGATGCTGCTAGTTTGAGTAGAATATCTCTTTCTT TTTTTTTTAAGATCAATTTATAAGATAACTGAGGGTACATATGCTTGTAGCTCTGGCTTGTGATGGCTATCTTTGCGATG GCTACGAGCCTGAGGATGTATGCAGCTTGTCAACATCTTCAAGCGCAAGCCAGGGCTCATGCTGCAGCAGCCTCTGGATT ACTAGGCCATAATGAATTACGACTTCATGTGCCGCCATCCATAGCAATCGCAACTAGAGGACGGTTGCATGGACTTAGAC TTCAGCTTGCACTTCTTGATCGTGAATTTGATGAGCTAGGTATATGCACTTTTGGATATTTGTCATTTGGTAGTTTTTTT AAAGATGAGACTGCCTCACAAGTCCGAAGATTGTGAAAAGCAGATGAAGGATGTGCTAGTCTCTTTTTGTACAATTTTCT GTCATTATTCATAATCTTTTTTCCCTTTCGTTTTGAGGTAGATTATGACAGCTTGAGAGCTCTGGACTCTGATACTGCTT CTAGTACTCCATCAATGACTGAAGAAGAGATAAATTCCTTGCCTGTTCACACATATAAAGTTGCAGTTCCAACAAAGTGA GTTGTGTTGGTTTCTAAACAATTCTTTTTGTGAATGAATGAGAAGAAATGCTCGCTGTATATATGTAGATTTTTTGTTTC TATGTTTTTCCACTGTATAAGTAGGAGGGAGGTTGGCGGGTCAGCCCACCATTATATCTTGTTTTTTTTAGATCGCACTA AATTGTGAATTGTTGGTAGTGATGGGTGATTTCTTGTAGAAAACCATAGGATATATATCTCATGTCTGGAACAAATAGGC ATGGTTGTGTGAAGCTTCTGAATTTAGCTAAAATTGATACCCTAAATTCTTTCTTATGTTGTATTTTGAAAACTTATTGG AGCTGCAGAAAACAACCGCAGTTAAAGTTAGAATAATATGTGCTACTCTTTGCCACTTTAGATTTTTGTGGTAAAGTAAA GAAAAATACATAAAAGATGCATAATCAGTAGGTTCTAACATGATGTTCGTCTATATTTCAAAAAAAAAAATAACATGATG TTCGTCTATACCGCAAAAATGATTTTGAAAGATTGATTGATGCATATCGCTTGTTAGTTGACAGTTCTAGCCTTCAGAAA ATTCTGCATTTCTTAGCATTGCTCAGGAAACAGAATCAGAATTAAATTCTTCAAAGAAAAGCGCATTGTAGTTTGTTTTT TTTTATATTAACCTTTTCAGGCTCTCAATACCAGGTTTTCCCCCTTCTCCCTTTGGGAGTGTGGTTCTGTCCACTTTATG TAAAGAAATGAGAGTGTTACAATGAGTTGATATAATTTGTTTACATGTAATCAGGGATGGAACCGCAGGGTTGGCATCCT CTTCAGGTGCAGCTGAGGTAGGTATCTCTTTCATCTCAGGTTTCTCCTTTTGTGTTGTTCATTCTCCCAATGTTATTTGA GTTATGAAGAAGGTTTTTCTTTTTAATAATTATGTGGTTAGTTGCTTGACGTTTTGGTTGTTAGTTTATGCACTGCTGAG GATGTTGCTTTTTTGTATGAGGTCATAAAACGGTTGAGATTTCTGAATTTATTAAGTTGTATCTGGTTCCATTCTGGCCA ACCAGAAGTTTTTAACTACATAATTTAATGGGGAAGTAATGATAATTTTTGTTTAACTTCCAAGCTTCTGTGTTGTATGT CATAATTCGAGGACTGCTTGGTGGCGCAAAAGTTAGACCACAAATTCAATAAATTTTAAAAAGCAACCAATCCTATCTTG TAGCCGTTAAAACGAGGTAAAAAACAGAATTAGAAAATATCAACCAATGAAATGGAGTACAATGCATAGAGATGGATTTT GTTGGGTGCCAAATAGTATTTTTTTTGTAATTTGCCTTGTCTTATTAGACCATAGGTAGATATAATCTTCAAATTACAGT TGCGATGTTGGTTCTGAACCTTGCACATTATGCTTGTTGGTGCTGTTGGAAATGAGAAATAACAGCTTGCTTCAAATCTG TTTTAGTTCTTGTAACTTCAAACATCTAACTTGAGAGAAATGGGTAGAAACCCTTGTGCCTGGGGTTGACATAGATGTGT TTGGACCTTTCTGTTCGGAAGGTTTAATGTGAAGAAATTTATGCTATATATAAACAAATCATCAAAATATTAGTAAAAAT TAGGTGGTAGGGTTAGATCAACATAAACTCAATGTTGAAGAACTTCTTATACTGAAACCAAATGGATTCTTCGAAGCGTG ACAACCCAGCTAAAATAATAGACTTTGTTAAGGTTGTCAGTTTTTAACACTCCATGAGTGAATGGCATCTGCCATGCATG TAGGAGGCTGCATTGACTCCATAGTAGAAGTAAACAAAAGTTTGTCTTCCTTTAGGCTATGTTTGGATATCCGTGGAACC AGTGTAAACGAACATCACCATGCACTTTAAGACAAAAAGTGATCGGAACTATTCATAAGGATTGTGATGAAAGTTTGTTT ACCTGCGCTCTATCAGTATCCAAACACACTTTTTGGGCGTATATCTTACATTCTTACTGGAAGATCTAGAAGGTAGGCAT GAATTATAATCCTTAACACTAATCATAAAATCTTAGGCAATCCCTTGCATATAGATTGCTAATGTCATCTGGTTACCCTG ATATAATTCCCTCTCCAATACATTAAAATGCTTTTAAGAGAGTTTGTTTCTTCTTGATATGCAGTTCTTCCACTTTGTCT AGATAATGGCATTTGTAATTAAATTAAATAAATTGACTGTTTCTATTCCTAGAATGGATTTTAGTTTTTGCCCAATTTTT TGAATCAGATTAAACAAGACTCTGAAGGAGCAGAGGGAAGCATCAAAGTTTCAGTAGATGAACTGACATGTACCATATGC TTGGAACATGTTAAGAGGGGAGAGCTTGTTCGTAACTTGCCCTGCTTACATCAGGTTTGTGCTTCGCCTTTTACTCATTA AATAAATACTACTACTGAAAAACTGAAGTTTGACATAAATGACCAATTTACTCTCTAATCTCTATTATTGTTTCGTGTTT TTAATCCAGTTTCATGCGAATTGCATTGATCAATGGCTCCGTCAACAAGGAACATGTCCAGTTTGTAAATTTAGGATGGG GTTGGGATGGCAGGGAAATGGTGATAGCGAGTCCGATGGTTCAGACATTGTGTAGCAGCATTCTTCAAATGTTCCTGTAA AATGCACGAGGTCGTTTATACACGTATCACGTATGTATATAGTTATGATTATATTTATCATTATGACTGATTATGATGAT GATGATGATAATGATAATAATGTATGATGTGCTAGTGTTTACCCAGAACCTGGCATAAGGAAAAGAATGTATATGTTTAG TCACTTCAGTTCAGATAGTAATCTTGATCTTCATCA
CDS sequence (LotjaGi3g1v0285300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTTCGTTTTCCGAGGGAGTAGGGGAGATATTGAAAGCGGTTTTTCAGAATATGCTCCTGAGAGAACCACAATGCG TGTACATCCATCTCGGCCAGTTAATAGCAATTCACTGGCTTTTCTGATTACAGTTATTATGCTATTCATTTTATTGAGTT CTCCTCAGATGTCGCATTATCTTTTGCTCTGGCTTGTGATGGCTATCTTTGCGATGGCTACGAGCCTGAGGATGTATGCA GCTTGTCAACATCTTCAAGCGCAAGCCAGGGCTCATGCTGCAGCAGCCTCTGGATTACTAGGCCATAATGAATTACGACT TCATGTGCCGCCATCCATAGCAATCGCAACTAGAGGACGGTTGCATGGACTTAGACTTCAGCTTGCACTTCTTGATCGTG AATTTGATGAGCTAGATTATGACAGCTTGAGAGCTCTGGACTCTGATACTGCTTCTAGTACTCCATCAATGACTGAAGAA GAGATAAATTCCTTGCCTGTTCACACATATAAAGTTGCAGTTCCAACAAAGGATGGAACCGCAGGGTTGGCATCCTCTTC AGGTGCAGCTGAGATTAAACAAGACTCTGAAGGAGCAGAGGGAAGCATCAAAGTTTCAGTAGATGAACTGACATGTACCA TATGCTTGGAACATGTTAAGAGGGGAGAGCTTGTTCGTAACTTGCCCTGCTTACATCAGTTTCATGCGAATTGCATTGAT CAATGGCTCCGTCAACAAGGAACATGTCCAGTTTGTAAATTTAGGATGGGGTTGGGATGGCAGGGAAATGGTGATAGCGA GTCCGATGGTTCAGACATTGTGTAG
Protein sequence (LotjaGi3g1v0285300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFVFRGSRGDIESGFSEYAPERTTMRVHPSRPVNSNSLAFLITVIMLFILLSSPQMSHYLLLWLVMAIFAMATSLRMYA ACQHLQAQARAHAAAASGLLGHNELRLHVPPSIAIATRGRLHGLRLQLALLDREFDELDYDSLRALDSDTASSTPSMTEE EINSLPVHTYKVAVPTKDGTAGLASSSGAAEIKQDSEGAEGSIKVSVDELTCTICLEHVKRGELVRNLPCLHQFHANCID QWLRQQGTCPVCKFRMGLGWQGNGDSESDGSDIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 274 | 274 | 9.1E-143 | – | |
| Phobius | 1 | 33 | 33 | - | – | |
| PANTHER | 1 | 274 | 274 | 9.1E-143 | – | |
| TMHMM | 33 | 52 | 20 | - | – | |
| Phobius | 34 | 54 | 21 | - | – | |
| Phobius | 55 | 59 | 5 | - | – | |
| Phobius | 60 | 80 | 21 | - | – | |
| TMHMM | 62 | 81 | 20 | - | – | |
| Phobius | 81 | 274 | 194 | - | – | |
| Gene3D | 189 | 257 | 69 | 2.1E-19 | ||
| SUPERFAMILY | 207 | 257 | 51 | 1.46E-20 | – | |
| CDD | 211 | 253 | 43 | 2.78078E-21 | – | |
| Pfam | 211 | 253 | 43 | 7.6E-13 | ||
| SMART | 212 | 252 | 41 | 2.2E-8 | ||
| ProSiteProfiles | 212 | 253 | 42 | 12.666 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0285300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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