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LotjaGi3g1v0296000.1

Overview

Field Value
Gene ID LotjaGi3g1v0296000
Transcript ID LotjaGi3g1v0296000.1
Lotus japonicus genome version Gifu v1.2
Description E3 ubiquitin-protein ligase RGLG2; TAIR: AT1G79380.1 Ca(2)-dependent phospholipid-binding protein (Copine) family; Swiss-Prot: sp|Q9SAL0|RGLG4_ARATH E3 ubiquitin-protein ligase RGLG4; TrEMBL-Plants: tr|K7MCZ5|K7MCZ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0296000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:61343696..61348434) extracted from Lotus japonicus Gifu genome v1.2.

AAAATAAATGTAATAATTTAGTTATATGTGACATAATGTGATTGGACGTCGTTGTATATCATTTATTTTTTTTATTGATT ATTTAGTTTTGAATACTTTCCTACTTTAGGTCTTTACTCTTGAGAATCAGTTGAAGATGCGATATGGGGAACTCTAATGG TAAGCAGCCAGACGACGTCGTTCACTTCACCAGCAGAAACTCCGACGAGAGAATCTCCTCCACCGCAGCAAGGTCGCCGC CGCCGGAACCACCGAAGATGAGTGGTGAAGGAGCTTCAAGGAAACTATCTACGAAGAAGAAGTATGCTCTGATTCCTGAT AACTTCACTTCCCTTCCACAGGTTTAATTTCCTACACCTTTTACTCTTATTTTATTGATTTACGATGTTTTAATTTGCAA TTCGTGCGAAAAAAAATTCAGTTATTTTGAGCCCCATTATACAGGTTACAACTGCCCTGAGGAACGAAGGTTTAGAATCC TCAAATCTTGTCTTGGGAATTGATTTCACAAAAAGCAATGAATGGACTGGTAAGTAGCATATAAACAAAATTCTACTAAT TCTATGATCCCTTGCAAATTGCAATCCATGTTGGATGAAATGAAGCCATATTCCTAGGTCGAAAGTTCGACCCTTAAGAG CATTCTTGGGGGACTTTTGCCCTTTACCACATTCGGGTCGAATTGCAAGACTGTGAGAGCAACTTAGTACATAAAAAAAA ATATTCCTGTTTTGACATTAAAGTGGGGGGATTTGGTTATTCTTTCTTTTTGAATTGATTGCTTTATGACTACTTATCAC TTATTATTGAAGGCAAGATCTCATTCAAAAATAGAAGCCTGCATGCAATCGGAGATTCCCCTAATCCCTATGAGAAAGCC ATTTCTATTATTGGCAAAACTTTGGCTCCCTTTGATGATGACAACTTGATTCCTTGCTTTGGCTTTGGTGATGGTAAGGC CAAATCCTTATAGCTTAACATGTAGTATAAAATAAAGTTATAGTTTATCCCTTATAATTTCTGTTATTATATATACAGCT ACTACTCATGATCGCGAAGTTTTTAGCTTTCACACTGATGATTCATCTTGCCTTGGATTTGAGGAAGTTTTGGCTTGCTA TAAGAAAATTGTTCCAAACTTGAGACTTTCAGGTAACTTTCCTCTTAGCTCAGTGTTGTTCCATATGCATCGCAATAACT TAGCTCAGTATGTTGTAATTGCTAGTTAAAGGCTTTTTTTAGTTGTTGAAAACATTTCACACATGGAATGATGTTTTAAT AGAATCACCCCTTGTCTATTAAATTTGAGCCGTCACACTGGTATATGAAATCCATGTGCAATAGAATCAAATTTGATCTT CATGACTTTAAACTTCCTCATCAGAAAACAAAACTTAAATTCCATTGCATAATAAATAGAATCATACATCTCACCTCTCA TAAGCAATGGCGATTCCTAATTTTATAGAATGATGCATGGAATAGGAATTTCATTTTGTATTCTTTTTTAGTTAACAAAT AATGTTATGATCCGAAAATACTAACGTGGAGAAACATAAGAGAAAGAAGATAAACGATAATCTTTTTGGTATTTTTATTA TATAAAAACTGGAAAATAAGATAGATAAAGAACTAAGAGGCTGGTTCCTCTTAGAACCAAGAGGTTGGTTCCTCTTCAAT AGGGCTGGTTCCCTTTACAACTCAATAAATCAATTCCCTACTCTAACCTAAGGAGGATACACCTATTTATAATAAACTGA CTCAACAAGTATAGTATCTTAAAAGATATAATCCTAATAAAATGACTCCTAATAAAATATCATATCTCAATAAAAGATAG ACCTCAAAATAAAATATAAACTCCTAAAATAAAGATTGACACTAAAACCAAAACATATACTCCTAAATTAAAATAGACTA AATCCCTAATATATAGAATCCTAACAAATAAGGAAATCTCATCTCGTGGGGTAAGGACGCGTTTGAGAAACCAATTAACT AAGTTCTTAGTGCATAATGGCTTATTCATAATCTAATTTGGATAGCTTATGAAAATAGCCTCATAACAGCATCTAGGTAG GTTATGGACTATTGGATTGGGTGCTTATGCTATACGATAAGCTCCAATAAGCTCTTCCAGACGAGGCCTAAATCATAGAA TAGAATCACCATGAATTCCCCATATTAAACATAACATTAGTAAGCTGAAAAGTCATTCGCTGAAGAAATATCTGTATATT GTTTGTAGGACCAACTTCTTACGCTCCGGTTATTGAAGCTGCAATAGACATAGTGGAGAAAACTCATGGCCAGTTCCATG TGTTAGTTATTGTTGCAGATGGCCAGGTATTTAATGTTATCTTCATGTAATGATGTCTGCTTGTGATTCCCGAGTTAACA TTATTTTGTTTGATTTGAAGGTTACAACAAATGCCTACTCTGGAGATGGTGAGCTCAGTTCTCAAGAGGAGAGGACAATC AAAGCAATAGTTGATGCAAGGTAGATATGGTGAATTGATAATTGTACACCAACCATAGATGCTTATCAAGATACCATGCA ATAAAATGAAACTATGATAAAACACAATGAACTATCAACAAAATGGAAATTAGCATCTGTTATGTCTAATGTCTGATTAA ATAAAACAATGACATGCAGCTACTTAATCAAACATTCAGCTCTTGTTTGATATGAACTGTTTTGAATAACCTTTCTTAAA ATACGTTCTTTTTCAGTTTTCAAGACAAAAATCCAAAACAGCTCAAATATGTTATGTTTTTGTTTTCTAGTCACTTTTCC TTTTCTTCTTTTGAAAAACAGGCTTTAAAAATTGTTTCTGAAAATGATCTTAAATTTAAACAACTGAGAAGACAATCAAA CAAGCTCTAATTATCTGATCTTTTCTGCTTTCAGTTCATATCCGCTTTCTATTATTTTGGTTGGAGTTGGTGATGGACCT TGGGAAGACATGAAAAAGTTTGATGACAAGATACCATCACGCGATTTTGACAATTTTCAGGTATGGCTTAAAATTTTGAG TGACATTTCCTAATGCATTGTTTGCAACAACTTTGTTATATCAAAGGACCTTTCCCCTTTTATGCAGTTTGTTAACTTCA CTGAAATCATGTCTAAGAAAGCAAGTTCCTCTGAGAAAGAAGCTGCTTTTGCTCTGGCTGCTCTAATGGAGATACCTCTC CAATATAAAGCGGCCATTGAACTTGGATTGCTTGGGTGGGTTCCTTGCAGCATACTTTGGGTCCATTTTGGTGACAGATT TCCTAAGAGCAATCTAGTTTCCTTGTTAAATTTTCTGTTTGGTGATTATTTAATTGGTTTTCTTCTTCTGTCTTTGCCTT TTGGACAAAAGTCGTAAAACAGGAAGGGCTAAGAAAATGGTTCCAAGACCTCCTCCAGTTCCTTATTCTCCGCCTGTGCC ACGGGCTCATTTCCGGAGTAACATGGCAGCATCTATGGAAGATGAGCGGAACCAAATGGTATATATGACTGAAACCTGGA GTTCATTATATTTCCTCACTACCACTATGATTTCCACCAAATAACAGTTAAACTTTGTCACATCAAACATTTTTTGCAAT CTTCCTTCGTAACATGTAGCGTTGTTGAACTAAGAACATACTTTTTCAACAAATTTCTATCATCAATCTAATGACCGAGT AATAAAGAGTTTGTTTAAAAGCTGAGTTAAGAATAATTTATATTGCTAGTCTTTCTCAACAAGTAATTTATTATTTTGGG ATACAAGTAGAGTAAAAGTTAAAGATGGAGGAAAACAGTCCTGGAAACAACCAACCATAAACTGCATAACCACAAATTAG ATATTTTTGGTACATGAAAACTAAGTGGTTATCAACTTACCAAGTAAAGGTACTGCTCTATGATTATTGCTCAAGTATAG AGTTACTGATGGAACAAGGTTTGCGCTTATATCAATTTTGAAGTTGCACAGTTGTCATGAATTTATTTTGTTTTAATCGA ATAAAATTATATATGTAGGAGTGTGCAATTTGTCTAACAAATGGAAAGGATTTGGCCTTTGGATGTGGTCACATGGTGAG CCTCATTAGTTACATTCACAGCCACTTATCTCTTTTGTTGTTCCTTGTTTGATAGCTACTCTGATGATATCTAATAATAT TTGAATTGCAGAGTTGCAGAGATTGTGGATCCAGGTTAAGCAATTGTCACATATGCCGTGAGAGGATCACAAGTCGTCTT AGGGTGTTTACTGGCTGATTGCAGACTGTAAAATCATTACAGCTGCATAATTTGGCTAAAAAGATAACTGTCTTTTGTGT GTTTGATGGTGTGGCTTTTAAGAGTGGCGATGGTCTTGCATAAAAAGATAATTTGGCTTTATAAGGAATGGATGGCCTAG GAGTGGAGACAATTGTACATAAACTGGACTCAAACCCACGCATTGTGCAGTGCAGAAAAGGATTTTGTAATTTTGTTAGA CTATAAACGAAAATTGTATGCCCTGTATGTGTCATAACTCTCACTTTGTTATATGTCCCTTTCATAGAATATTTGGAAAT ATCCAAACATCAACATGAATGAAGGTTATTATTTTAACAGAAGAGACTACATTTGACACTCGACTGATAGGCTTGGGTAA CAGTGAAGCTTGAGTAAAAAATAATAATTTCTCGATCGGAAGGCTAACAAAACAAAGAAACAAACTAAAGAACAGTAAAC GAGTCCCTCAGGAGATAGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0296000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGAACTCTAATGGTAAGCAGCCAGACGACGTCGTTCACTTCACCAGCAGAAACTCCGACGAGAGAATCTCCTCCAC CGCAGCAAGGTCGCCGCCGCCGGAACCACCGAAGATGAGTGGTGAAGGAGCTTCAAGGAAACTATCTACGAAGAAGAAGT ATGCTCTGATTCCTGATAACTTCACTTCCCTTCCACAGGTTACAACTGCCCTGAGGAACGAAGGTTTAGAATCCTCAAAT CTTGTCTTGGGAATTGATTTCACAAAAAGCAATGAATGGACTGGCAAGATCTCATTCAAAAATAGAAGCCTGCATGCAAT CGGAGATTCCCCTAATCCCTATGAGAAAGCCATTTCTATTATTGGCAAAACTTTGGCTCCCTTTGATGATGACAACTTGA TTCCTTGCTTTGGCTTTGGTGATGCTACTACTCATGATCGCGAAGTTTTTAGCTTTCACACTGATGATTCATCTTGCCTT GGATTTGAGGAAGTTTTGGCTTGCTATAAGAAAATTGTTCCAAACTTGAGACTTTCAGGACCAACTTCTTACGCTCCGGT TATTGAAGCTGCAATAGACATAGTGGAGAAAACTCATGGCCAGTTCCATGTGTTAGTTATTGTTGCAGATGGCCAGGTTA CAACAAATGCCTACTCTGGAGATGGTGAGCTCAGTTCTCAAGAGGAGAGGACAATCAAAGCAATAGTTGATGCAAGTTCA TATCCGCTTTCTATTATTTTGGTTGGAGTTGGTGATGGACCTTGGGAAGACATGAAAAAGTTTGATGACAAGATACCATC ACGCGATTTTGACAATTTTCAGTTTGTTAACTTCACTGAAATCATGTCTAAGAAAGCAAGTTCCTCTGAGAAAGAAGCTG CTTTTGCTCTGGCTGCTCTAATGGAGATACCTCTCCAATATAAAGCGGCCATTGAACTTGGATTGCTTGGTCGTAAAACA GGAAGGGCTAAGAAAATGGTTCCAAGACCTCCTCCAGTTCCTTATTCTCCGCCTGTGCCACGGGCTCATTTCCGGAGTAA CATGGCAGCATCTATGGAAGATGAGCGGAACCAAATGGAGTGTGCAATTTGTCTAACAAATGGAAAGGATTTGGCCTTTG GATGTGGTCACATGAGTTGCAGAGATTGTGGATCCAGGTTAAGCAATTGTCACATATGCCGTGAGAGGATCACAAGTCGT CTTAGGGTGTTTACTGGCTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0296000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGNSNGKQPDDVVHFTSRNSDERISSTAARSPPPEPPKMSGEGASRKLSTKKKYALIPDNFTSLPQVTTALRNEGLESSN LVLGIDFTKSNEWTGKISFKNRSLHAIGDSPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDREVFSFHTDDSSCL GFEEVLACYKKIVPNLRLSGPTSYAPVIEAAIDIVEKTHGQFHVLVIVADGQVTTNAYSGDGELSSQEERTIKAIVDASS YPLSIILVGVGDGPWEDMKKFDDKIPSRDFDNFQFVNFTEIMSKKASSSEKEAAFALAALMEIPLQYKAAIELGLLGRKT GRAKKMVPRPPPVPYSPPVPRAHFRSNMAASMEDERNQMECAICLTNGKDLAFGCGHMSCRDCGSRLSNCHICRERITSR LRVFTG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 49 49 - –
MobiDBLite
mobidb-lite
1 27 27 - –
PANTHER
PTHR45751:SF16
40 405 366 1.4E-205 –
PANTHER
PTHR45751
40 405 366 1.4E-205 –
SMART
SM00327
78 281 204 3.2E-7
IPR002035
SUPERFAMILY
SSF53300
79 262 184 3.95E-12
IPR036465
Pfam
PF07002
103 317 215 1.1E-74
IPR010734
Gene3D
G3DSA:3.30.40.10
343 406 64 5.5E-13
IPR013083
SUPERFAMILY
SSF57850
349 400 52 2.47E-5 –
Pfam
PF13920
358 399 42 9.7E-8 –
ProSiteProfiles
PS50089
361 394 34 9.686
IPR001841

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0296000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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