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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0314000 |
| Transcript ID | LotjaGi3g1v0314000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G32415.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|P0C7R0|PPR69_ARATH Pentatricopeptide repeat-containing protein At1g32415, mitochondrial; TrEMBL-Plants: tr|K7N2J6|K7N2J6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0314000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:66450486..66452859) extracted from Lotus japonicus Gifu genome v1.2.
CACCTATACTCTAGTTAGTAGTTACCTCACAATACATTAATTATATAATTCCTTTAATAAAATATATTTGAAAAAAAAGT GGGATATAAAATGAGAAACGGCTTGTCGTTCATGTGCCATGCTTCTTCACCACCACTCATCAATTCTCCAGCGGTTGATG CTGGCCTCTAGTTTGAGATTCAGGCGCTTCAAGTATCAGTATCACTACCAGTGCTATTGTTCATGCACCAACCCTTCTCA AGCTCCGGTAGCATTCACTGCCAAAACCGTATGCAACGAGTCTCTGCTCTTCCGCTATCTAACCAAAGGGTGGCATCACG AAGCACGGAACCTCCTTCTTCAGAGCTTTTCAGCCGGAGACCTCCACGCCCGTGTTGTTCGATGGACCTCGCTGCTCACC AACTACACCCGAAAGGGTCATGTATTCGAAGCTCGGATGCTGTTCGACGTAATGCCTCACAGAAACATAGTCACCTGCAA TGCCATGTTGTCCGGGTACTTGCAGTCCGGGATGCTCGACGAGGCTCGCTGGTTTTTCGAGAGCATGCCGGAGAGGAATG TGGTTTCTTGGACCGCGATGCTTGGTGGGTATGCGGATGCGGGGAGGGTTGAGGATGCGAGGAGGGTGTTTGATGTAATG CCGGAGAGGAATGTCGTGTCCTGGAACGCGATGGTTGGTGGGTTGGTTAGGAATGGGGATTTGGAGGGAGCGAGAATGGT TTTTGAACAGACCCCTTGTAGAAATGTGGTGTCGTGGAATGTTATGATCGCGGGTTATGCTGAAAATGGTGCAATGGATG AGGCGAGGGCATTGTTTGACCAGATGGAGTTTAGGAATGTGATTACTTGGACTAGTATGATATCTGGGTATTGTCGTGCA GGGAATGTGGAAGCGGCTTATGGTTTGTTTCGGACTATGCCGGAGAAGAATGTTGTTTCTTGGACAGCCATGATTGGTGG GTTTGCTTGGAATGGCTTTTATGAAGAGGCATTGTTGCTTTTTCTTCAGATGTCACTTTCTGATTCCAAACCCAATGGGG AGGAGACCTTTATTTCTCTTGCCTATGCTTGTGCTGGTCTTAGTTTCCCTTACCTCGGCAGACAGTTGCATGCTCAGCTG ATTGTTAATGGCTGGAAGCTTGATGATTATGATGGTAGGTTACGGAGGAGTCTTGTTAGGATGTACTCAGTGTTTGGTCT TATGGACTATGCAAGCAATGTGTTGGAAGGTAATCTGAATAACTTTGATGATCAATCTTTAAATTCTATGATAAATGGTT ATGTACAAGCCGGTCAGTTAGAAAAGGCTCAAGAGTTGTTTGACACAGTACCTATCCGAAACAAAATTGCATGGACTTGC ATGATTTCCGGCTATCTTAGTGCAGGGCAAGTATTCAAGGCATGCGATCTCTTTGACAGCATGCCTGATAGGGATTCCAT TGCATGGACTTCAATGATTTCTGGGTATGTCCAAAATGAGCTGATCGCCGAAGCCATCAGCTTGTTTGGTGAAATGATGG CTCATGGATTTTCTCCTTTAAATGGCACGTTTGCTGTTCTTTTTGGTGCCATGGGTTCGGTTGCATATCTTGATCAAGGG CGGCAATTGCATGGTATGCAGGTGAAGACAATATATGAATATGATTTGATTCTTGAGAACTCTCTGGTTTCAATGTATGC AAAATGTGGGGAGATAGATGATTCTTATAGGATATTCTCAAACATGGCTTATCGGGACAAAATTTCATGGAACTCCATGA TCATGGGCCTCTCAGATCACGGGAGGGCCAGTGAAGCTTTAACGGTGTACGAAACTATGCTTGAATTTGGACTTTACCCT GACACTGTTACTTTCCTAGGTGTCCTAACAGCATGTGCTCATGCGGGTCTTGTTAATAAAGGGTGGGAGTTATTTAATTC TATGGTCAATTCTTATGGACTTCAACCTGGCTTTGACCATTATATTAGTATCATCAATCTTCTGGGCAGGGCTGGGAAGG TGAAGGATGCAGAGGAGTTTGTGTTGAGGCTACCTGTTGAACCAAATCATGCGATATGGGGGGCATTGGTTGGGGTGTGT GGGTTGAGTAAAACTGATGCAGATGTTGCTAGTCGTGCAACTAAACGACTGCTTGAGTTGGATCCTTTGAACGCACCAGG TCATGTTGCCCTTTGTAACATATATGCTGCAAATGATAGACATATTGAGGTGACAAGTTTAAGAAAAGAAATGAGGATAA AAGGTGTGAGGAAGGCACCTGGGTGTAGTTGGATATTAGTTAAGGGTAGAGTTCATGTATTCTCGTCAGGAGACAGATTA GAACCACACGTAGAAGATATATTACTACAAATTTGAGATAGAAATTGTTTTTTG
CDS sequence (LotjaGi3g1v0314000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCTTCACCACCACTCATCAATTCTCCAGCGGTTGATGCTGGCCTCTAGTTTGAGATTCAGGCGCTTCAAGTATCA GTATCACTACCAGTGCTATTGTTCATGCACCAACCCTTCTCAAGCTCCGGTAGCATTCACTGCCAAAACCGTATGCAACG AGTCTCTGCTCTTCCGCTATCTAACCAAAGGGTGGCATCACGAAGCACGGAACCTCCTTCTTCAGAGCTTTTCAGCCGGA GACCTCCACGCCCGTGTTGTTCGATGGACCTCGCTGCTCACCAACTACACCCGAAAGGGTCATGTATTCGAAGCTCGGAT GCTGTTCGACGTAATGCCTCACAGAAACATAGTCACCTGCAATGCCATGTTGTCCGGGTACTTGCAGTCCGGGATGCTCG ACGAGGCTCGCTGGTTTTTCGAGAGCATGCCGGAGAGGAATGTGGTTTCTTGGACCGCGATGCTTGGTGGGTATGCGGAT GCGGGGAGGGTTGAGGATGCGAGGAGGGTGTTTGATGTAATGCCGGAGAGGAATGTCGTGTCCTGGAACGCGATGGTTGG TGGGTTGGTTAGGAATGGGGATTTGGAGGGAGCGAGAATGGTTTTTGAACAGACCCCTTGTAGAAATGTGGTGTCGTGGA ATGTTATGATCGCGGGTTATGCTGAAAATGGTGCAATGGATGAGGCGAGGGCATTGTTTGACCAGATGGAGTTTAGGAAT GTGATTACTTGGACTAGTATGATATCTGGGTATTGTCGTGCAGGGAATGTGGAAGCGGCTTATGGTTTGTTTCGGACTAT GCCGGAGAAGAATGTTGTTTCTTGGACAGCCATGATTGGTGGGTTTGCTTGGAATGGCTTTTATGAAGAGGCATTGTTGC TTTTTCTTCAGATGTCACTTTCTGATTCCAAACCCAATGGGGAGGAGACCTTTATTTCTCTTGCCTATGCTTGTGCTGGT CTTAGTTTCCCTTACCTCGGCAGACAGTTGCATGCTCAGCTGATTGTTAATGGCTGGAAGCTTGATGATTATGATGGTAG GTTACGGAGGAGTCTTGTTAGGATGTACTCAGTGTTTGGTCTTATGGACTATGCAAGCAATGTGTTGGAAGGTAATCTGA ATAACTTTGATGATCAATCTTTAAATTCTATGATAAATGGTTATGTACAAGCCGGTCAGTTAGAAAAGGCTCAAGAGTTG TTTGACACAGTACCTATCCGAAACAAAATTGCATGGACTTGCATGATTTCCGGCTATCTTAGTGCAGGGCAAGTATTCAA GGCATGCGATCTCTTTGACAGCATGCCTGATAGGGATTCCATTGCATGGACTTCAATGATTTCTGGGTATGTCCAAAATG AGCTGATCGCCGAAGCCATCAGCTTGTTTGGTGAAATGATGGCTCATGGATTTTCTCCTTTAAATGGCACGTTTGCTGTT CTTTTTGGTGCCATGGGTTCGGTTGCATATCTTGATCAAGGGCGGCAATTGCATGGTATGCAGGTGAAGACAATATATGA ATATGATTTGATTCTTGAGAACTCTCTGGTTTCAATGTATGCAAAATGTGGGGAGATAGATGATTCTTATAGGATATTCT CAAACATGGCTTATCGGGACAAAATTTCATGGAACTCCATGATCATGGGCCTCTCAGATCACGGGAGGGCCAGTGAAGCT TTAACGGTGTACGAAACTATGCTTGAATTTGGACTTTACCCTGACACTGTTACTTTCCTAGGTGTCCTAACAGCATGTGC TCATGCGGGTCTTGTTAATAAAGGGTGGGAGTTATTTAATTCTATGGTCAATTCTTATGGACTTCAACCTGGCTTTGACC ATTATATTAGTATCATCAATCTTCTGGGCAGGGCTGGGAAGGTGAAGGATGCAGAGGAGTTTGTGTTGAGGCTACCTGTT GAACCAAATCATGCGATATGGGGGGCATTGGTTGGGGTGTGTGGGTTGAGTAAAACTGATGCAGATGTTGCTAGTCGTGC AACTAAACGACTGCTTGAGTTGGATCCTTTGAACGCACCAGGTCATGTTGCCCTTTGTAACATATATGCTGCAAATGATA GACATATTGAGGTGACAAGTTTAAGAAAAGAAATGAGGATAAAAGGTGTGAGGAAGGCACCTGGGTGTAGTTGGATATTA GTTAAGGGTAGAGTTCATGTATTCTCGTCAGGAGACAGATTAGAACCACACGTAGAAGATATATTACTACAAATTTGA
Protein sequence (LotjaGi3g1v0314000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLHHHSSILQRLMLASSLRFRRFKYQYHYQCYCSCTNPSQAPVAFTAKTVCNESLLFRYLTKGWHHEARNLLLQSFSAG DLHARVVRWTSLLTNYTRKGHVFEARMLFDVMPHRNIVTCNAMLSGYLQSGMLDEARWFFESMPERNVVSWTAMLGGYAD AGRVEDARRVFDVMPERNVVSWNAMVGGLVRNGDLEGARMVFEQTPCRNVVSWNVMIAGYAENGAMDEARALFDQMEFRN VITWTSMISGYCRAGNVEAAYGLFRTMPEKNVVSWTAMIGGFAWNGFYEEALLLFLQMSLSDSKPNGEETFISLAYACAG LSFPYLGRQLHAQLIVNGWKLDDYDGRLRRSLVRMYSVFGLMDYASNVLEGNLNNFDDQSLNSMINGYVQAGQLEKAQEL FDTVPIRNKIAWTCMISGYLSAGQVFKACDLFDSMPDRDSIAWTSMISGYVQNELIAEAISLFGEMMAHGFSPLNGTFAV LFGAMGSVAYLDQGRQLHGMQVKTIYEYDLILENSLVSMYAKCGEIDDSYRIFSNMAYRDKISWNSMIMGLSDHGRASEA LTVYETMLEFGLYPDTVTFLGVLTACAHAGLVNKGWELFNSMVNSYGLQPGFDHYISIINLLGRAGKVKDAEEFVLRLPV EPNHAIWGALVGVCGLSKTDADVASRATKRLLELDPLNAPGHVALCNIYAANDRHIEVTSLRKEMRIKGVRKAPGCSWIL VKGRVHVFSSGDRLEPHVEDILLQI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 147 | 115 | 3.4E-117 | – | |
| Gene3D | 63 | 174 | 112 | 6.4E-25 | ||
| ProSiteProfiles | 85 | 115 | 31 | 7.114 | ||
| Pfam | 89 | 117 | 29 | 0.014 | ||
| ProSiteProfiles | 116 | 150 | 35 | 11.915 | ||
| Pfam | 118 | 148 | 31 | 2.9E-7 | ||
| TIGRFAM | 118 | 149 | 32 | 3.2E-5 | ||
| Pfam | 149 | 179 | 31 | 3.7E-6 | ||
| TIGRFAM | 149 | 180 | 32 | 2.4E-6 | ||
| ProSiteProfiles | 151 | 177 | 27 | 7.245 | ||
| PANTHER | 152 | 204 | 53 | 3.4E-117 | – | |
| Gene3D | 175 | 239 | 65 | 1.9E-17 | ||
| ProSiteProfiles | 178 | 208 | 31 | 8.747 | ||
| TIGRFAM | 180 | 204 | 25 | 1.9E-4 | ||
| Pfam | 180 | 204 | 25 | 1.4E-4 | ||
| PANTHER | 192 | 267 | 76 | 3.4E-117 | – | |
| Pfam | 208 | 237 | 30 | 7.2E-7 | ||
| ProSiteProfiles | 209 | 239 | 31 | 10.863 | ||
| TIGRFAM | 211 | 240 | 30 | 7.9E-6 | ||
| ProSiteProfiles | 240 | 274 | 35 | 12.671 | ||
| Pfam | 240 | 267 | 28 | 2.2E-10 | ||
| Gene3D | 240 | 322 | 83 | 4.6E-19 | ||
| TIGRFAM | 242 | 273 | 32 | 3.0E-8 | ||
| PANTHER | 251 | 319 | 69 | 3.4E-117 | – | |
| Pfam | 273 | 298 | 26 | 7.8E-6 | ||
| TIGRFAM | 273 | 306 | 34 | 0.0011 | ||
| ProSiteProfiles | 275 | 305 | 31 | 6.774 | ||
| PANTHER | 310 | 435 | 126 | 3.4E-117 | – | |
| Gene3D | 345 | 498 | 154 | 4.5E-25 | ||
| ProSiteProfiles | 377 | 411 | 35 | 9.109 | ||
| Pfam | 380 | 402 | 23 | 3.1E-5 | ||
| TIGRFAM | 381 | 402 | 22 | 0.003 | ||
| TIGRFAM | 411 | 438 | 28 | 4.8E-6 | ||
| Pfam | 411 | 438 | 28 | 8.2E-6 | ||
| ProSiteProfiles | 412 | 438 | 27 | 6.007 | ||
| Pfam | 439 | 485 | 47 | 1.5E-7 | ||
| ProSiteProfiles | 439 | 473 | 35 | 12.134 | ||
| TIGRFAM | 442 | 473 | 32 | 3.2E-7 | ||
| PANTHER | 443 | 705 | 263 | 3.4E-117 | – | |
| ProSiteProfiles | 509 | 539 | 31 | 7.925 | ||
| Gene3D | 512 | 729 | 218 | 2.3E-31 | ||
| Pfam | 514 | 536 | 23 | 0.13 | ||
| SUPERFAMILY | 516 | 692 | 177 | 1.23E-5 | ||
| Pfam | 540 | 587 | 48 | 1.3E-8 | ||
| ProSiteProfiles | 540 | 574 | 35 | 11.915 | ||
| TIGRFAM | 542 | 576 | 35 | 4.3E-7 | ||
| ProSiteProfiles | 575 | 610 | 36 | 8.594 | ||
| TIGRFAM | 577 | 610 | 34 | 0.0015 | ||
| ProSiteProfiles | 611 | 641 | 31 | 5.733 | ||
| Pfam | 615 | 635 | 21 | 1.2 | ||
| ProSiteProfiles | 678 | 712 | 35 | 5.886 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0314000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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