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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0317600 |
| Transcript ID | LotjaGi3g1v0317600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G38730.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730; TrEMBL-Plants: tr|I1MIS0|I1MIS0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0317600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:67179601..67182305) extracted from Lotus japonicus Gifu genome v1.2.
GAAACATGCCACTTCCAGTTCCACGGGATCAAAATTATGAATGAGAAGTACTTAAAAAGAAATTGTGAATGAGAAGAAAA ACAAAAGGAAGGAAAACAAAGCATAGCATAACCATAACATAGCACTGAATAACTATGGTATTGGTACCTATTTGTTTATT CATTACTAAGATGTCTTTCTGAAATGATGCACCACATGTATCATAGTAATAGACATGGTTTTGATTGAGAATCAGAGGCA ATTTATTGATGGTGTGTGTGCAATTATTGTCAAGGGTCATTGGGGCAATCTCTTGAAGGTGAACAATGCCCCTGTTCTCT CTTCCACTACCATTCACCAAGTGCTTTTGCAGCTCTCACTCAATGGTTATGGCCCCTCTATTTCCTTCCCATTCTTCAAA TGGGTTGAATCCACCCCACATTACACTCACTCCTTGCAATGCTCATGGGCCATGATTCAAATACTTGCAAAATATAAGCA TTTCAAAACTGCACAACAGATGCTCGACAAAATTGCCCACAGAGATTTTCTCTCATCACCTTCAGTTTTGAGCTCGCTGG TGAGGATTCACGATGACCCGGAAGTTAATTCACAAGTTTTGAGCTGGCTTGTGATACATTATGCAAAGTCAAGGATGACC CAGGATGCCCTCCAAGTTTTTGAGCAGATGAGGTTGTACCAACTCAAGCCTCATTTGCCTGCTTGTACTGTGCTTTTGAG TTCCTTGTTGAAGGATGGGACTACCAACGTGGTGTGGAAGATTCACAAGAGACTGGTTCAAGATGGGGTTGTCCTCAATA TCTATATTTACAATTGTTTGATTCATGCTTGTTCCAAATCTAGAGATGTGGAGAGGGCAAAACAGTTACTGAATGAGATG GAGGAAAAGGGTGTGGTTCCTGATATTTTCACATACAATACTTTGATATCATTATATTGCAAAAAAGGTATGCACTATGA GGCTTTATCCATCCAGGACAAAATGGAAAGAGAGGGAATAAATCTTGATATTGTTAGTTACAATTCTCTTATTTATGGAT TTTGCAAAGAAGGTAGGATGAGAGAAGCTACGAGGATGTTTAGCGAAATAAAAGATGCCACTCCCAATCATGTGACATAT ACTACATTGATAGATGGTTACTGTAAAGCAAATGAATTGGATCAAGCTCTGAAAGTACGTGAGCTGATGGAGGCTAAGGG ATTGTACCCTGGAGTTGCTACTTATAATTCAATTCTGCGCAAGCTGTGTCAAGATGGCAGGATAAGGGATGCTAACAAAC TCTTGAATGAGATGAGTGAAAAAAAAGTTCAAGCTGACAATATCACGTGCAACACGCTGATTAATGCTTACTCCAAGATT GGAGATTTGAAATCTGCTTTGAAATTTAAGAACAAGATGTTAGAATCTGGGCTAAAGCCTGATCCCTTTACATATAAGGC ACTGATTCATGGGTTCTGCAAAATGGATGAGCTGGAAAGCGCCAAGGAGCTACTGTTTGGCATGCTTGATGCCGGATTTA CCCCCAGTTATTGCTCGTATTCATGGATAGTAGATGGATACTGCAAGAAAGATAATGTGGATGCAATTTTAGCACTTCCA GATGAGTTTCTGAGTAAAGGTCTTTGTCTTGATGCTTCAGTATACAGGGCACTAATTAGAAGGTTATGCAAGATAGAACA GATTGAATGTGCTGAAAAGTTATTCTATCATATGGAGGGAAATGGTATTTCTGGCGACAGTGTTATTTACACTAGTCTCG CCTATGCTTACTGGAAATCAGGCAAAACAAGTGTTGCCTCAAATGTTTTAGAAGAGATGGCTAAGAGGAGGTTGATAATC ACAGCGAAAATCTATAGCTGCTTTAGTGTTCCTGATGGTCATGGTGAAAACAAAGTGTCACAGATGTTCTGGGATCATGT GGTGGAAAGGGGTCTGATGTCAAGAAATACAATGAGGAAAATACAGCAGATGCTGATATGATGATAATCTTGCTGATAAA GGGCACAACTAGGAGATTCTTCCTACACTTCATGTTGGCAATGTATTGCTTCTGGTTACCAGAGTGTCTTCCCCCATGTT ATGGCTTTTCATTAGTTTGAAGAATCAGAGATTTGGGTAAGACATATAGAAACTTTTTACAATCCTTGTATGCTAACCAT CATAAATCACCTTAATTTGAAACTTATTTATGCATTACTCTGTTGATAGTGGATATGACTATTTTCTGTATGGAACTTGC AACTGTCATTGTAGCTTTAAACCTGTTTACAAATTACCTTGTCTCTGTGGATAGCCTAGTATTTTTGAAGGTTTTTGGTG GAACATGGTTTAGGGCTCACCCATGTAGTTTGTAGTTAAGTCCATTGAAACAGTTCTTCGGACTCCCCGTGACAGTGCAA CACTAGGCAATGAAGAAGAAATGTGAGAATGACTGACTAGGATCTTTTATTCATGTTGTCCCTTTATATTGTTTACTAGT TGCATGGTGAGAATGAATCTCTCACTATGCACCTACAGCACAATATATAGAATTTGCACACAGATTGGTGAGAATAGACT GTAACAATACTAACAAGCTCAAAAAGGGAATTTGTTGAGCTCAGCCTTTACCCTTAACAGATGTAAGAAAATAACAAATT CAGAATAAACAACCATGATATCAGGTTTCTCAGCTACAGAATGGGGCAACCTCAACCATAGGTAA
CDS sequence (LotjaGi3g1v0317600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTTGATTGAGAATCAGAGGCAATTTATTGATGGTGTGTGTGCAATTATTGTCAAGGGTCATTGGGGCAATCTCTT GAAGGTGAACAATGCCCCTGTTCTCTCTTCCACTACCATTCACCAAGTGCTTTTGCAGCTCTCACTCAATGGTTATGGCC CCTCTATTTCCTTCCCATTCTTCAAATGGGTTGAATCCACCCCACATTACACTCACTCCTTGCAATGCTCATGGGCCATG ATTCAAATACTTGCAAAATATAAGCATTTCAAAACTGCACAACAGATGCTCGACAAAATTGCCCACAGAGATTTTCTCTC ATCACCTTCAGTTTTGAGCTCGCTGGTGAGGATTCACGATGACCCGGAAGTTAATTCACAAGTTTTGAGCTGGCTTGTGA TACATTATGCAAAGTCAAGGATGACCCAGGATGCCCTCCAAGTTTTTGAGCAGATGAGGTTGTACCAACTCAAGCCTCAT TTGCCTGCTTGTACTGTGCTTTTGAGTTCCTTGTTGAAGGATGGGACTACCAACGTGGTGTGGAAGATTCACAAGAGACT GGTTCAAGATGGGGTTGTCCTCAATATCTATATTTACAATTGTTTGATTCATGCTTGTTCCAAATCTAGAGATGTGGAGA GGGCAAAACAGTTACTGAATGAGATGGAGGAAAAGGGTGTGGTTCCTGATATTTTCACATACAATACTTTGATATCATTA TATTGCAAAAAAGGTATGCACTATGAGGCTTTATCCATCCAGGACAAAATGGAAAGAGAGGGAATAAATCTTGATATTGT TAGTTACAATTCTCTTATTTATGGATTTTGCAAAGAAGGTAGGATGAGAGAAGCTACGAGGATGTTTAGCGAAATAAAAG ATGCCACTCCCAATCATGTGACATATACTACATTGATAGATGGTTACTGTAAAGCAAATGAATTGGATCAAGCTCTGAAA GTACGTGAGCTGATGGAGGCTAAGGGATTGTACCCTGGAGTTGCTACTTATAATTCAATTCTGCGCAAGCTGTGTCAAGA TGGCAGGATAAGGGATGCTAACAAACTCTTGAATGAGATGAGTGAAAAAAAAGTTCAAGCTGACAATATCACGTGCAACA CGCTGATTAATGCTTACTCCAAGATTGGAGATTTGAAATCTGCTTTGAAATTTAAGAACAAGATGTTAGAATCTGGGCTA AAGCCTGATCCCTTTACATATAAGGCACTGATTCATGGGTTCTGCAAAATGGATGAGCTGGAAAGCGCCAAGGAGCTACT GTTTGGCATGCTTGATGCCGGATTTACCCCCAGTTATTGCTCGTATTCATGGATAGTAGATGGATACTGCAAGAAAGATA ATGTGGATGCAATTTTAGCACTTCCAGATGAGTTTCTGAGTAAAGGTCTTTGTCTTGATGCTTCAGTATACAGGGCACTA ATTAGAAGGTTATGCAAGATAGAACAGATTGAATGTGCTGAAAAGTTATTCTATCATATGGAGGGAAATGGTATTTCTGG CGACAGTGTTATTTACACTAGTCTCGCCTATGCTTACTGGAAATCAGGCAAAACAAGTGTTGCCTCAAATGTTTTAGAAG AGATGGCTAAGAGGAGGTTGATAATCACAGCGAAAATCTATAGCTGCTTTAGTGTTCCTGATGGTCATGGTGAAAACAAA GTGTCACAGATGTTCTGGGATCATGTGGTGGAAAGGGGTCTGATGTCAAGAAATACAATGAGGAAAATACAGCAGATGCT GATATGA
Protein sequence (LotjaGi3g1v0317600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLIENQRQFIDGVCAIIVKGHWGNLLKVNNAPVLSSTTIHQVLLQLSLNGYGPSISFPFFKWVESTPHYTHSLQCSWAM IQILAKYKHFKTAQQMLDKIAHRDFLSSPSVLSSLVRIHDDPEVNSQVLSWLVIHYAKSRMTQDALQVFEQMRLYQLKPH LPACTVLLSSLLKDGTTNVVWKIHKRLVQDGVVLNIYIYNCLIHACSKSRDVERAKQLLNEMEEKGVVPDIFTYNTLISL YCKKGMHYEALSIQDKMEREGINLDIVSYNSLIYGFCKEGRMREATRMFSEIKDATPNHVTYTTLIDGYCKANELDQALK VRELMEAKGLYPGVATYNSILRKLCQDGRIRDANKLLNEMSEKKVQADNITCNTLINAYSKIGDLKSALKFKNKMLESGL KPDPFTYKALIHGFCKMDELESAKELLFGMLDAGFTPSYCSYSWIVDGYCKKDNVDAILALPDEFLSKGLCLDASVYRAL IRRLCKIEQIECAEKLFYHMEGNGISGDSVIYTSLAYAYWKSGKTSVASNVLEEMAKRRLIITAKIYSCFSVPDGHGENK VSQMFWDHVVERGLMSRNTMRKIQQMLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 27 | 186 | 160 | 7.8E-11 | ||
| ProSiteProfiles | 73 | 107 | 35 | 5.108 | ||
| ProSiteProfiles | 125 | 159 | 35 | 8.638 | ||
| PANTHER | 132 | 252 | 121 | 3.5E-99 | – | |
| Pfam | 136 | 153 | 18 | 0.75 | ||
| ProSiteProfiles | 160 | 194 | 35 | 6.774 | ||
| Pfam | 183 | 243 | 61 | 4.7E-14 | ||
| Gene3D | 187 | 258 | 72 | 7.0E-21 | ||
| ProSiteProfiles | 195 | 229 | 35 | 13.351 | ||
| TIGRFAM | 197 | 231 | 35 | 5.7E-11 | ||
| ProSiteProfiles | 230 | 264 | 35 | 12.353 | ||
| TIGRFAM | 232 | 265 | 34 | 6.9E-8 | ||
| PANTHER | 249 | 329 | 81 | 3.5E-99 | – | |
| Gene3D | 259 | 326 | 68 | 4.5E-22 | ||
| Pfam | 261 | 292 | 32 | 2.1E-11 | ||
| ProSiteProfiles | 265 | 295 | 31 | 11.213 | ||
| TIGRFAM | 267 | 294 | 28 | 7.7E-7 | ||
| Pfam | 297 | 346 | 50 | 2.4E-14 | ||
| ProSiteProfiles | 298 | 332 | 35 | 12.869 | ||
| TIGRFAM | 300 | 333 | 34 | 2.2E-9 | ||
| PANTHER | 323 | 500 | 178 | 3.5E-99 | – | |
| Gene3D | 327 | 430 | 104 | 2.6E-29 | ||
| ProSiteProfiles | 333 | 367 | 35 | 10.841 | ||
| TIGRFAM | 336 | 368 | 33 | 9.4E-7 | ||
| ProSiteProfiles | 368 | 402 | 35 | 12.397 | ||
| Pfam | 368 | 416 | 49 | 3.1E-15 | ||
| TIGRFAM | 370 | 403 | 34 | 1.8E-8 | ||
| ProSiteProfiles | 403 | 437 | 35 | 11.805 | ||
| TIGRFAM | 405 | 438 | 34 | 6.2E-6 | ||
| ProSiteProfiles | 438 | 472 | 35 | 7.53 | ||
| Gene3D | 451 | 566 | 116 | 1.2E-15 | ||
| PANTHER | 469 | 549 | 81 | 3.5E-99 | – | |
| ProSiteProfiles | 473 | 507 | 35 | 9.394 | ||
| TIGRFAM | 476 | 508 | 33 | 3.1E-4 | ||
| Pfam | 496 | 540 | 45 | 0.0046 | ||
| ProSiteProfiles | 508 | 542 | 35 | 8.857 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0317600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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